Wall clock time and date at job start Tue Mar 31 2020 11:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 119.99784 * 2 1 4 4 C 1.50698 * 109.47064 * 90.00108 * 3 2 1 5 5 H 1.07999 * 120.00277 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00018 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00093 * 359.72334 * 6 4 3 8 8 Si 1.86805 * 119.99994 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46930 * 179.72490 * 8 6 4 10 10 H 1.48504 * 109.47004 * 299.71881 * 8 6 4 11 11 H 1.48494 * 109.47162 * 59.71968 * 8 6 4 12 12 C 1.34776 * 120.00642 * 180.02562 * 2 1 3 13 13 O 1.21585 * 120.00665 * 180.02562 * 12 2 1 14 14 N 1.34780 * 119.99555 * 359.97438 * 12 2 1 15 15 C 1.39941 * 120.00178 * 174.70911 * 14 12 2 16 16 C 1.38892 * 120.06443 * 326.56865 * 15 14 12 17 17 C 1.38099 * 119.92484 * 179.78917 * 16 15 14 18 18 C 1.38303 * 120.07179 * 0.48317 * 17 16 15 19 19 C 1.38263 * 120.14030 * 359.74894 * 18 17 16 20 20 C 1.50697 * 119.96545 * 179.97438 * 19 18 17 21 21 H 1.09001 * 110.21688 * 160.49439 * 20 19 18 22 22 C 1.54479 * 110.24588 * 282.51521 * 20 19 18 23 23 C 1.54630 * 101.76314 * 144.41601 * 22 20 19 24 24 C 1.51281 * 104.19470 * 335.20567 * 23 22 20 25 25 O 1.21287 * 124.94121 * 196.23426 * 24 23 22 26 26 N 1.34415 * 110.11774 * 16.25140 * 24 23 22 27 27 C 1.38143 * 120.06719 * 0.02562 * 19 18 17 28 28 H 1.09002 * 109.47267 * 90.00663 * 1 2 3 29 29 H 1.09009 * 109.46917 * 209.99668 * 1 2 3 30 30 H 1.08998 * 109.47327 * 329.99653 * 1 2 3 31 31 H 1.09003 * 109.47285 * 330.00257 * 3 2 1 32 32 H 1.08997 * 109.47395 * 210.00133 * 3 2 1 33 33 H 0.97001 * 119.99855 * 0.27284 * 7 6 4 34 34 H 0.97005 * 119.99997 * 354.71547 * 14 12 2 35 35 H 1.07999 * 120.04156 * 359.97438 * 16 15 14 36 36 H 1.08003 * 119.96455 * 180.22599 * 17 16 15 37 37 H 1.07992 * 119.93083 * 179.72031 * 18 17 16 38 38 H 1.08997 * 110.97046 * 262.53754 * 22 20 19 39 39 H 1.09001 * 110.96859 * 26.30131 * 22 20 19 40 40 H 1.09002 * 110.48534 * 216.52688 * 23 22 20 41 41 H 1.09004 * 110.59865 * 93.93824 * 23 22 20 42 42 H 0.97000 * 124.34995 * 180.39057 * 26 24 23 43 43 H 1.08002 * 120.03226 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1259 2.8780 1.6728 7 7 3.5575 3.6157 0.6731 8 14 3.4378 3.4169 3.4340 9 1 4.1854 4.7000 3.4340 10 1 2.1403 3.6001 4.1328 11 1 4.2355 2.3791 4.1352 12 6 2.1390 -1.1671 -0.0005 13 8 3.3548 -1.1671 -0.0001 14 7 1.4651 -2.3344 -0.0005 15 6 2.1603 -3.5437 -0.1128 16 6 3.3197 -3.6116 -0.8745 17 6 4.0059 -4.8055 -0.9798 18 6 3.5343 -5.9350 -0.3360 19 6 2.3778 -5.8717 0.4191 20 6 1.8671 -7.1050 1.1185 21 1 1.1815 -6.8274 1.9192 22 6 1.1632 -8.0391 0.1094 23 6 1.5472 -9.4354 0.6514 24 6 2.8317 -9.1969 1.4142 25 8 3.6074 -10.0640 1.7567 26 7 2.9880 -7.8842 1.6573 27 6 1.6893 -4.6794 0.5322 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6083 2.0285 -0.5138 32 1 3.1498 1.1385 -0.5138 33 1 3.3959 3.3357 -0.2414 34 1 0.4982 -2.3362 0.0772 35 1 3.6859 -2.7312 -1.3815 36 1 4.9095 -4.8581 -1.5690 37 1 4.0702 -6.8684 -0.4235 38 1 0.0830 -7.8952 0.1325 39 1 1.5535 -7.8906 -0.8974 40 1 1.7154 -10.1308 -0.1710 41 1 0.7725 -9.8145 1.3179 42 1 3.7443 -7.5011 2.1286 43 1 0.7862 -4.6305 1.1225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365508378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:45 Heat of formation + Delta-G solvation = -30.608012 kcal Electronic energy + Delta-G solvation = -25707.418834 eV Core-core repulsion = 21945.631507 eV Total energy + Delta-G solvation = -3761.787327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.96167 -40.21571 -38.64681 -36.73785 -35.18943 -34.46208 -32.81614 -31.66621 -31.57104 -29.59830 -27.46933 -27.03425 -25.77077 -23.46652 -22.94931 -22.36508 -21.28086 -20.78511 -19.48994 -18.25163 -17.50912 -17.05590 -16.92035 -16.44001 -16.20829 -15.41677 -15.13771 -14.79338 -14.43531 -14.14157 -13.94332 -13.77949 -13.68721 -13.38351 -13.32829 -13.16998 -12.97744 -12.63978 -12.41520 -12.30730 -11.97217 -11.63552 -11.51341 -11.35929 -11.17245 -10.96500 -10.63003 -10.29346 -10.14060 -10.12493 -9.58874 -9.44002 -9.19921 -8.83808 -8.43195 -8.07720 -7.67126 -6.43141 -4.15640 1.25431 1.32978 2.29435 2.94025 3.11241 3.39594 3.44608 3.49137 3.61954 3.86127 4.03464 4.12295 4.28071 4.33927 4.50752 4.64113 4.71802 4.83279 5.05732 5.13252 5.27170 5.30373 5.31686 5.33487 5.42238 5.50109 5.57225 5.67483 5.68738 5.84273 5.96593 6.25663 6.29642 6.45520 6.55845 6.57192 6.62363 6.73402 6.95810 7.10670 7.21958 7.43342 7.94292 7.96828 8.36160 8.37163 8.73356 9.05048 9.53715 10.94155 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.002534 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.989481 B =11046.218200 C =11391.438406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.608 5.608 3 C 0.250 3.750 4 C -0.608 4.608 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.908 5.908 8 Si 1.071 2.929 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.698 3.302 13 O -0.566 6.566 14 N -0.696 5.696 15 C 0.186 3.814 16 C -0.116 4.116 17 C -0.097 4.097 18 C -0.132 4.132 19 C -0.087 4.087 20 C 0.176 3.824 21 H 0.091 0.909 22 C -0.124 4.124 23 C -0.157 4.157 24 C 0.518 3.482 25 O -0.538 6.538 26 N -0.722 5.722 27 C -0.143 4.143 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.025 0.975 32 H 0.036 0.964 33 H 0.267 0.733 34 H 0.402 0.598 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.413 0.587 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.377 -21.412 -3.434 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.343 5.343 3 C 0.130 3.870 4 C -0.647 4.647 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.544 5.544 8 Si 0.899 3.101 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.214 1.214 12 C 0.400 3.600 13 O -0.442 6.442 14 N -0.346 5.346 15 C 0.090 3.910 16 C -0.137 4.137 17 C -0.115 4.115 18 C -0.151 4.151 19 C -0.089 4.089 20 C 0.071 3.929 21 H 0.109 0.891 22 C -0.162 4.162 23 C -0.197 4.197 24 C 0.305 3.695 25 O -0.415 6.415 26 N -0.377 5.377 27 C -0.165 4.165 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.239 0.761 35 H 0.156 0.844 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.252 0.748 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.514 -20.562 -2.403 22.384 hybrid contribution -1.016 -0.817 -0.560 1.419 sum -9.530 -21.379 -2.963 23.593 Atomic orbital electron populations 1.21605 0.81368 1.02530 1.00503 1.47296 1.05789 1.06028 1.75173 1.19312 0.91797 0.77687 0.98202 1.22247 1.40973 1.09550 0.91928 0.93106 1.25811 0.93220 0.93298 1.06068 1.70814 1.43783 1.39714 1.00090 0.83508 0.76447 0.76340 0.73792 1.20602 1.21461 1.21392 1.15886 0.85551 0.80059 0.78553 1.90916 1.11292 1.85500 1.56484 1.43000 1.10059 1.03767 1.77743 1.17491 0.93837 0.84723 0.94976 1.21341 0.95382 0.98711 0.98230 1.21020 0.99372 0.92069 0.99072 1.20804 0.96618 0.98582 0.99084 1.19499 0.96363 0.93546 0.99472 1.20511 0.87724 0.89259 0.95409 0.89125 1.22723 1.01781 0.92321 0.99344 1.22382 0.96718 0.99044 1.01602 1.20900 0.87431 0.82329 0.78860 1.90770 1.49090 1.47199 1.54465 1.46371 1.25104 1.07688 1.58549 1.20575 1.02306 0.91807 1.01800 0.93485 0.93005 0.90224 0.95763 0.94640 0.92230 0.76112 0.84404 0.85786 0.86407 0.88794 0.89367 0.87931 0.87691 0.74805 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.25 59.84 0.61 1.85 16 2 N -0.61 -12.51 2.86 -188.74 -0.54 -13.05 16 3 C 0.25 6.35 4.47 -5.19 -0.02 6.32 16 4 C -0.61 -17.18 9.39 -34.44 -0.32 -17.50 16 5 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 6 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 7 N -0.91 -27.37 13.65 55.43 0.76 -26.61 16 8 Si 1.07 25.40 29.90 -169.99 -5.08 20.31 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.70 14.32 8.02 -86.92 -0.70 13.63 16 13 O -0.57 -14.07 13.62 5.29 0.07 -14.00 16 14 N -0.70 -10.48 5.22 -14.22 -0.07 -10.55 16 15 C 0.19 2.63 6.28 -83.69 -0.53 2.11 16 16 C -0.12 -1.75 8.65 -39.39 -0.34 -2.09 16 17 C -0.10 -1.18 10.04 -39.61 -0.40 -1.58 16 18 C -0.13 -1.37 9.24 -39.55 -0.37 -1.74 16 19 C -0.09 -0.82 4.93 -104.65 -0.52 -1.34 16 20 C 0.18 1.22 3.71 -68.17 -0.25 0.97 16 21 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 22 C -0.12 -0.63 6.66 -25.10 -0.17 -0.79 16 23 C -0.16 -0.93 6.86 -26.74 -0.18 -1.11 16 24 C 0.52 5.11 8.43 -10.86 -0.09 5.01 16 25 O -0.54 -7.72 18.03 5.55 0.10 -7.62 16 26 N -0.72 -6.05 5.11 -53.89 -0.28 -6.32 16 27 C -0.14 -1.53 9.59 -39.39 -0.38 -1.91 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.59 6.29 -51.92 -0.33 0.26 16 30 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 31 H 0.02 0.61 7.94 -51.93 -0.41 0.20 16 32 H 0.04 1.01 7.28 -51.93 -0.38 0.63 16 33 H 0.27 7.97 7.22 -40.82 -0.29 7.67 16 34 H 0.40 4.62 6.51 -40.82 -0.27 4.35 16 35 H 0.14 2.43 6.43 -52.49 -0.34 2.09 16 36 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.12 1.10 7.70 -52.49 -0.40 0.70 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.48 7.83 -51.93 -0.41 0.07 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.41 3.50 8.96 -40.82 -0.37 3.14 16 43 H 0.12 1.03 8.05 -52.49 -0.42 0.61 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -36.72 360.43 -9.13 -45.85 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.77 Total: 4.24 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -3.74 Total: 2.32 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.13 Total: -56.53 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.17 Total: -21.62 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.72 -9.13 -45.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365508378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.240 kcal (2) G-P(sol) polarization free energy of solvation -36.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds