Wall clock time and date at job start Tue Mar 31 2020 11:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 119.99784 * 2 1 4 4 C 1.50698 * 109.47064 * 90.00108 * 3 2 1 5 5 H 1.07999 * 120.00277 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00018 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00093 * 359.72334 * 6 4 3 8 8 Si 1.86805 * 119.99994 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46930 * 179.72490 * 8 6 4 10 10 H 1.48504 * 109.47004 * 299.71881 * 8 6 4 11 11 H 1.48494 * 109.47162 * 59.71968 * 8 6 4 12 12 C 1.34776 * 120.00642 * 180.02562 * 2 1 3 13 13 O 1.21585 * 120.00665 * 180.02562 * 12 2 1 14 14 N 1.34780 * 119.99555 * 359.97438 * 12 2 1 15 15 C 1.39941 * 120.00178 * 174.70911 * 14 12 2 16 16 C 1.38892 * 120.06443 * 326.56865 * 15 14 12 17 17 C 1.38099 * 119.92484 * 179.78917 * 16 15 14 18 18 C 1.38303 * 120.07179 * 0.48317 * 17 16 15 19 19 C 1.38263 * 120.14030 * 359.74894 * 18 17 16 20 20 C 1.50697 * 119.96545 * 179.97438 * 19 18 17 21 21 H 1.09001 * 110.21688 * 160.49439 * 20 19 18 22 22 C 1.54479 * 110.24588 * 282.51521 * 20 19 18 23 23 C 1.54630 * 101.76314 * 144.41601 * 22 20 19 24 24 C 1.51281 * 104.19470 * 335.20567 * 23 22 20 25 25 O 1.21287 * 124.94121 * 196.23426 * 24 23 22 26 26 N 1.34415 * 110.11774 * 16.25140 * 24 23 22 27 27 C 1.38143 * 120.06719 * 0.02562 * 19 18 17 28 28 H 1.09002 * 109.47267 * 90.00663 * 1 2 3 29 29 H 1.09009 * 109.46917 * 209.99668 * 1 2 3 30 30 H 1.08998 * 109.47327 * 329.99653 * 1 2 3 31 31 H 1.09003 * 109.47285 * 330.00257 * 3 2 1 32 32 H 1.08997 * 109.47395 * 210.00133 * 3 2 1 33 33 H 0.97001 * 119.99855 * 0.27284 * 7 6 4 34 34 H 0.97005 * 119.99997 * 354.71547 * 14 12 2 35 35 H 1.07999 * 120.04156 * 359.97438 * 16 15 14 36 36 H 1.08003 * 119.96455 * 180.22599 * 17 16 15 37 37 H 1.07992 * 119.93083 * 179.72031 * 18 17 16 38 38 H 1.08997 * 110.97046 * 262.53754 * 22 20 19 39 39 H 1.09001 * 110.96859 * 26.30131 * 22 20 19 40 40 H 1.09002 * 110.48534 * 216.52688 * 23 22 20 41 41 H 1.09004 * 110.59865 * 93.93824 * 23 22 20 42 42 H 0.97000 * 124.34995 * 180.39057 * 26 24 23 43 43 H 1.08002 * 120.03226 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1259 2.8780 1.6728 7 7 3.5575 3.6157 0.6731 8 14 3.4378 3.4169 3.4340 9 1 4.1854 4.7000 3.4340 10 1 2.1403 3.6001 4.1328 11 1 4.2355 2.3791 4.1352 12 6 2.1390 -1.1671 -0.0005 13 8 3.3548 -1.1671 -0.0001 14 7 1.4651 -2.3344 -0.0005 15 6 2.1603 -3.5437 -0.1128 16 6 3.3197 -3.6116 -0.8745 17 6 4.0059 -4.8055 -0.9798 18 6 3.5343 -5.9350 -0.3360 19 6 2.3778 -5.8717 0.4191 20 6 1.8671 -7.1050 1.1185 21 1 1.1815 -6.8274 1.9192 22 6 1.1632 -8.0391 0.1094 23 6 1.5472 -9.4354 0.6514 24 6 2.8317 -9.1969 1.4142 25 8 3.6074 -10.0640 1.7567 26 7 2.9880 -7.8842 1.6573 27 6 1.6893 -4.6794 0.5322 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6083 2.0285 -0.5138 32 1 3.1498 1.1385 -0.5138 33 1 3.3959 3.3357 -0.2414 34 1 0.4982 -2.3362 0.0772 35 1 3.6859 -2.7312 -1.3815 36 1 4.9095 -4.8581 -1.5690 37 1 4.0702 -6.8684 -0.4235 38 1 0.0830 -7.8952 0.1325 39 1 1.5535 -7.8906 -0.8974 40 1 1.7154 -10.1308 -0.1710 41 1 0.7725 -9.8145 1.3179 42 1 3.7443 -7.5011 2.1286 43 1 0.7862 -4.6305 1.1225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365508378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:44 Heat of formation + Delta-G solvation = -56.879085 kcal Electronic energy + Delta-G solvation = -25708.558033 eV Core-core repulsion = 21945.631507 eV Total energy + Delta-G solvation = -3762.926526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.89613 -41.34586 -39.75100 -37.64732 -36.82482 -35.84584 -34.79823 -32.47364 -32.16954 -30.78888 -29.16054 -27.75425 -27.31587 -25.27171 -23.80591 -23.43274 -22.25729 -21.44736 -20.79134 -19.60100 -18.92287 -18.58854 -17.80002 -17.44354 -17.31875 -16.72251 -16.22038 -15.96967 -15.66086 -15.59904 -15.04257 -15.03152 -14.66032 -14.58898 -14.46839 -14.04197 -13.87855 -13.73525 -13.64681 -13.43142 -13.33458 -13.11086 -12.84832 -12.53321 -12.43137 -12.11426 -11.96587 -11.87417 -11.47502 -11.25496 -11.12008 -10.91964 -10.62332 -10.23024 -9.75150 -9.59834 -9.02671 -8.68244 -6.45748 0.29720 0.36537 1.48805 1.56529 1.57965 1.62105 1.77642 2.06761 2.41342 2.52696 2.82851 2.95031 3.10039 3.45550 3.54043 3.79453 3.95435 4.16687 4.19977 4.22405 4.23783 4.36788 4.46386 4.52692 4.55493 4.66980 4.73299 4.79579 4.89659 4.90252 4.97483 5.11871 5.20929 5.30011 5.36356 5.47565 5.54200 5.57223 5.80136 5.85239 5.93600 6.02870 6.07103 6.16583 6.44669 6.94424 7.22951 7.30504 7.52393 8.65328 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.002534 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.989481 B =11046.218200 C =11391.438406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.617 5.617 3 C 0.262 3.738 4 C -0.616 4.616 5 H 0.044 0.956 6 C -0.031 4.031 7 N -0.931 5.931 8 Si 1.118 2.882 9 H -0.280 1.280 10 H -0.260 1.260 11 H -0.283 1.283 12 C 0.693 3.307 13 O -0.622 6.622 14 N -0.673 5.673 15 C 0.157 3.843 16 C -0.145 4.145 17 C -0.104 4.104 18 C -0.124 4.124 19 C -0.074 4.074 20 C 0.176 3.824 21 H 0.117 0.883 22 C -0.115 4.115 23 C -0.148 4.148 24 C 0.509 3.491 25 O -0.593 6.593 26 N -0.721 5.721 27 C -0.126 4.126 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.026 0.974 32 H -0.006 1.006 33 H 0.256 0.744 34 H 0.421 0.579 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.409 0.591 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.501 -23.575 -2.029 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.352 5.352 3 C 0.140 3.860 4 C -0.655 4.655 5 H 0.063 0.937 6 C -0.230 4.230 7 N -0.568 5.568 8 Si 0.939 3.061 9 H -0.205 1.205 10 H -0.184 1.184 11 H -0.209 1.209 12 C 0.394 3.606 13 O -0.502 6.502 14 N -0.325 5.325 15 C 0.062 3.938 16 C -0.166 4.166 17 C -0.123 4.123 18 C -0.143 4.143 19 C -0.076 4.076 20 C 0.072 3.928 21 H 0.135 0.865 22 C -0.152 4.152 23 C -0.188 4.188 24 C 0.298 3.702 25 O -0.474 6.474 26 N -0.374 5.374 27 C -0.147 4.147 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.012 0.988 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.144 0.856 42 H 0.248 0.752 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.744 -22.758 -1.027 25.631 hybrid contribution -0.032 -0.261 -1.058 1.090 sum -11.776 -23.019 -2.085 25.941 Atomic orbital electron populations 1.21929 0.77558 1.04152 1.02793 1.47186 1.08064 1.04525 1.75391 1.18818 0.90729 0.80061 0.96427 1.22536 1.40613 1.09418 0.92933 0.93721 1.27327 0.92630 0.93674 1.09322 1.70929 1.45337 1.40531 1.00017 0.82931 0.77709 0.75983 0.69517 1.20481 1.18419 1.20854 1.16098 0.85049 0.81252 0.78156 1.90878 1.13989 1.86514 1.58778 1.42581 1.10757 1.02353 1.76761 1.17747 0.94240 0.85237 0.96565 1.21189 0.97070 0.98416 0.99968 1.21122 0.99623 0.91853 0.99658 1.20983 0.96959 0.98156 0.98207 1.19789 0.95315 0.94297 0.98159 1.20748 0.87420 0.88155 0.96485 0.86540 1.22780 1.03437 0.90672 0.98336 1.22416 0.94816 0.99919 1.01639 1.21623 0.88161 0.82041 0.78392 1.90741 1.51230 1.48700 1.56778 1.46501 1.25367 1.07669 1.57835 1.20849 1.03024 0.90368 1.00468 0.90818 0.89039 0.90956 0.95645 0.98821 0.93476 0.73823 0.88381 0.85125 0.85116 0.85606 0.89644 0.87212 0.85574 0.75233 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.13 10.25 127.77 1.31 3.43 16 2 N -0.62 -25.65 2.86 -869.31 -2.48 -28.13 16 3 C 0.26 13.86 4.47 85.63 0.38 14.24 16 4 C -0.62 -35.56 9.39 25.60 0.24 -35.32 16 5 H 0.04 2.58 7.81 -2.91 -0.02 2.55 16 6 C -0.03 -1.82 5.46 84.65 0.46 -1.35 16 7 N -0.93 -57.69 13.65 21.45 0.29 -57.39 16 8 Si 1.12 50.99 29.90 68.60 2.05 53.04 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 C 0.69 29.06 8.02 179.05 1.44 30.49 16 13 O -0.62 -32.78 13.62 -3.98 -0.05 -32.84 16 14 N -0.67 -19.51 5.22 -317.18 -1.66 -21.16 16 15 C 0.16 4.29 6.28 38.15 0.24 4.53 16 16 C -0.15 -4.57 8.65 22.39 0.19 -4.38 16 17 C -0.10 -2.57 10.04 22.25 0.22 -2.35 16 18 C -0.12 -2.36 9.24 22.29 0.21 -2.15 16 19 C -0.07 -1.14 4.93 -19.88 -0.10 -1.24 16 20 C 0.18 1.66 3.71 44.70 0.17 1.82 16 21 H 0.12 0.65 8.03 -2.39 -0.02 0.63 16 22 C -0.11 -0.59 6.66 31.65 0.21 -0.38 16 23 C -0.15 -1.18 6.86 30.59 0.21 -0.97 16 24 C 0.51 8.97 8.43 87.90 0.74 9.71 16 25 O -0.59 -16.74 18.03 -3.05 -0.06 -16.79 16 26 N -0.72 -10.15 5.11 -442.99 -2.26 -12.41 16 27 C -0.13 -2.25 9.59 22.39 0.21 -2.03 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.09 1.74 6.29 -2.38 -0.01 1.73 16 30 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 31 H 0.03 1.33 7.94 -2.39 -0.02 1.31 16 32 H -0.01 -0.38 7.28 -2.39 -0.02 -0.40 16 33 H 0.26 15.98 7.22 -92.71 -0.67 15.31 16 34 H 0.42 8.40 6.51 -92.70 -0.60 7.79 16 35 H 0.10 3.84 6.43 -2.91 -0.02 3.82 16 36 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.13 2.17 7.70 -2.91 -0.02 2.15 16 38 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.08 0.55 7.83 -2.39 -0.02 0.53 16 40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.41 6.21 8.96 -92.71 -0.83 5.38 16 43 H 0.16 1.72 8.05 -2.91 -0.02 1.70 16 Total: -1.00 -86.70 360.43 1.69 -85.01 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.28 Total: 16.62 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.14 Total: 14.07 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -6.11 Total: -119.11 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.11 Total: -49.63 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Total: -86.70 1.69 -85.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365508378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.126 kcal (2) G-P(sol) polarization free energy of solvation -86.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds