Wall clock time and date at job start Tue Mar 31 2020 11:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.45823 * 117.88753 * 2 1 4 4 C 1.52925 * 110.45300 * 161.06931 * 3 2 1 5 5 H 1.08997 * 109.60331 * 290.66398 * 4 3 2 6 6 N 1.46502 * 109.60192 * 170.33493 * 4 3 2 7 7 C 1.34775 * 119.99568 * 85.32515 * 6 4 3 8 8 O 1.21586 * 120.00167 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99979 * 179.97438 * 7 6 4 10 10 C 1.39958 * 120.00100 * 184.42327 * 9 7 6 11 11 C 1.39285 * 119.94916 * 144.76422 * 10 9 7 12 12 C 1.38486 * 120.43118 * 179.97438 * 11 10 9 13 13 C 1.37682 * 120.32190 * 359.97438 * 12 11 10 14 14 C 1.40740 * 119.88333 * 0.02562 * 13 12 11 15 15 C 1.41406 * 120.21382 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00485 * 148.84209 * 15 14 13 17 17 C 1.39931 * 119.99788 * 328.84487 * 15 14 13 18 18 N 1.30827 * 120.00540 * 167.79380 * 17 15 14 19 19 Si 1.86808 * 119.99966 * 347.79171 * 17 15 14 20 20 H 1.48501 * 109.46976 * 92.58431 * 19 17 15 21 21 H 1.48491 * 109.47377 * 212.58475 * 19 17 15 22 22 H 1.48503 * 109.46827 * 332.58746 * 19 17 15 23 23 C 1.38237 * 119.94483 * 324.48180 * 10 9 7 24 24 C 1.53344 * 108.80803 * 50.50189 * 4 3 2 25 25 C 1.53072 * 108.42845 * 292.55074 * 24 4 3 26 26 C 1.33356 * 117.95014 * 179.83253 * 2 1 3 27 27 O 1.21279 * 118.24214 * 2.24564 * 26 2 1 28 28 H 1.08997 * 109.46972 * 180.17095 * 1 2 3 29 29 H 1.09004 * 109.46923 * 300.16321 * 1 2 3 30 30 H 1.09002 * 109.47312 * 60.16383 * 1 2 3 31 31 H 1.09005 * 109.45582 * 40.68224 * 3 2 1 32 32 H 1.08995 * 109.17881 * 281.28813 * 3 2 1 33 33 H 0.96994 * 120.00516 * 265.33106 * 6 4 3 34 34 H 0.97001 * 120.00269 * 4.69803 * 9 7 6 35 35 H 1.08007 * 119.78629 * 359.95341 * 11 10 9 36 36 H 1.08004 * 119.83843 * 179.97438 * 12 11 10 37 37 H 1.07998 * 120.06034 * 180.02562 * 13 12 11 38 38 H 0.96995 * 120.00503 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.15927 * 0.02562 * 23 10 9 40 40 H 1.09008 * 109.67568 * 52.28103 * 24 4 3 41 41 H 1.09000 * 109.67609 * 172.81429 * 24 4 3 42 42 H 1.08995 * 109.40350 * 169.02756 * 25 24 4 43 43 H 1.09002 * 109.39812 * 288.77635 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1470 1.2889 0.0000 4 6 3.5949 1.1273 0.4648 5 1 3.6127 0.8783 1.5259 6 7 4.3255 2.3772 0.2408 7 6 4.2824 3.3576 1.1646 8 8 3.6377 3.2046 2.1840 9 7 4.9549 4.5074 0.9588 10 6 4.9865 5.4879 1.9571 11 6 6.1324 6.2584 2.1389 12 6 6.1744 7.2317 3.1232 13 6 5.0824 7.4486 3.9332 14 6 3.9176 6.6778 3.7612 15 6 2.7918 6.8951 4.5888 16 1 1.7973 6.7249 4.2035 17 6 2.9663 7.3307 5.9071 18 7 1.9399 7.7595 6.5957 19 14 4.6649 7.2999 6.6839 20 1 5.3251 8.6148 6.4827 21 1 4.5394 7.0264 8.1380 22 1 5.4806 6.2341 6.0482 23 6 3.8782 5.6940 2.7571 24 6 4.2493 -0.0023 -0.3397 25 6 3.5839 -1.3239 0.0523 26 6 2.0900 -1.1780 0.0034 27 8 1.4159 -2.1855 -0.0355 28 1 -0.3633 -1.0276 0.0031 29 1 -0.3633 0.5164 0.8886 30 1 -0.3634 0.5113 -0.8915 31 1 1.6279 1.9744 0.6700 32 1 2.1364 1.6996 -1.0095 33 1 4.8400 2.4993 -0.5723 34 1 5.4137 4.6570 0.1174 35 1 6.9941 6.0956 1.5083 36 1 7.0681 7.8234 3.2560 37 1 5.1197 8.2090 4.6992 38 1 2.0608 8.0611 7.5096 39 1 2.9877 5.0999 2.6142 40 1 4.1087 0.1773 -1.4057 41 1 5.3143 -0.0459 -0.1118 42 1 3.8943 -2.1053 -0.6413 43 1 3.8880 -1.5966 1.0628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414447490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:44 Heat of formation + Delta-G solvation = -34.468627 kcal Electronic energy + Delta-G solvation = -26078.394323 eV Core-core repulsion = 22316.439587 eV Total energy + Delta-G solvation = -3761.954735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.92476 -39.99361 -37.89978 -36.78508 -34.92322 -34.47489 -33.32748 -32.91364 -30.31631 -29.41688 -28.13498 -27.16277 -25.20805 -24.65674 -22.81789 -21.70315 -20.84977 -20.45593 -19.14815 -18.09267 -17.81024 -16.94520 -16.74233 -16.38329 -15.95406 -15.44348 -15.21406 -14.70831 -14.62055 -14.47975 -14.23894 -13.99881 -13.53941 -13.43367 -12.88084 -12.75916 -12.70738 -12.54482 -12.20810 -12.10250 -11.96982 -11.74106 -11.61464 -11.25320 -11.10235 -10.71107 -10.69756 -10.03021 -9.95912 -9.92297 -9.64410 -9.29050 -9.15958 -9.07015 -8.94295 -7.64888 -7.15126 -6.87320 -4.45710 2.38733 2.40332 2.58429 2.65320 2.91464 3.13792 3.26701 3.35928 3.45060 4.03699 4.17367 4.22573 4.32548 4.42964 4.54869 4.63618 4.89412 4.98858 5.17861 5.28046 5.31539 5.35164 5.43782 5.44476 5.61226 5.69879 5.73137 5.95970 6.08978 6.17022 6.29390 6.39626 6.53520 6.65939 6.82949 6.98650 7.18265 7.23312 7.45718 7.56402 7.63188 7.89780 7.91905 8.06392 8.22130 8.40676 8.67724 8.78409 8.86307 10.15452 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.003055 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.416567 B = 9164.120910 C =10087.500280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.601 5.601 3 C 0.099 3.901 4 C 0.153 3.847 5 H 0.101 0.899 6 N -0.742 5.742 7 C 0.697 3.303 8 O -0.558 6.558 9 N -0.680 5.680 10 C 0.175 3.825 11 C -0.263 4.263 12 C -0.065 4.065 13 C -0.250 4.250 14 C 0.102 3.898 15 C -0.440 4.440 16 H 0.090 0.910 17 C 0.082 3.918 18 N -0.815 5.815 19 Si 0.916 3.084 20 H -0.272 1.272 21 H -0.294 1.294 22 H -0.243 1.243 23 C -0.193 4.193 24 C -0.131 4.131 25 C -0.129 4.129 26 C 0.514 3.486 27 O -0.559 6.559 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.396 0.604 34 H 0.397 0.603 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.284 0.716 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.498 -11.723 -14.999 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.334 5.334 3 C -0.025 4.025 4 C 0.046 3.954 5 H 0.119 0.881 6 N -0.399 5.399 7 C 0.398 3.602 8 O -0.432 6.432 9 N -0.327 5.327 10 C 0.083 3.917 11 C -0.285 4.285 12 C -0.084 4.084 13 C -0.269 4.269 14 C 0.098 3.902 15 C -0.469 4.469 16 H 0.108 0.892 17 C -0.136 4.136 18 N -0.440 5.440 19 Si 0.743 3.257 20 H -0.198 1.198 21 H -0.222 1.222 22 H -0.166 1.166 23 C -0.215 4.215 24 C -0.169 4.169 25 C -0.169 4.169 26 C 0.303 3.697 27 O -0.438 6.438 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.230 0.770 34 H 0.231 0.769 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.394 -12.317 -13.839 19.041 hybrid contribution 1.143 0.449 -0.353 1.278 sum 5.537 -11.869 -14.193 19.312 Atomic orbital electron populations 1.21818 0.79222 1.04636 1.01773 1.47120 1.07799 1.05857 1.72630 1.21919 0.93660 0.84645 1.02292 1.20907 0.89549 0.83040 1.01903 0.88110 1.45001 1.55441 1.16169 1.23302 1.16001 0.80699 0.80100 0.83440 1.91021 1.44843 1.80146 1.27238 1.42540 1.55390 1.16043 1.18690 1.17287 0.94606 0.89236 0.90585 1.20037 0.96716 1.05527 1.06215 1.20346 0.96809 0.96385 0.94868 1.21054 0.96528 1.04579 1.04761 1.17647 0.92084 0.88763 0.91692 1.19479 0.94651 1.37067 0.95671 0.89196 1.26142 0.99106 0.90822 0.97526 1.69651 1.32872 1.30359 1.11098 0.86271 0.82326 0.80513 0.76549 1.19803 1.22200 1.16614 1.21131 0.97696 1.00897 1.01770 1.21971 1.01224 0.93066 1.00678 1.21583 0.90909 0.98945 1.05467 1.20191 0.91029 0.82798 0.75716 1.90701 1.66376 1.35741 1.50949 0.88967 0.91725 0.92116 0.89317 0.91356 0.76959 0.76940 0.88707 0.88472 0.88190 0.90521 0.86197 0.90465 0.89425 0.87542 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.47 59.84 0.63 1.30 16 2 N -0.60 -6.39 3.21 -182.80 -0.59 -6.98 16 3 C 0.10 0.98 5.99 -4.45 -0.03 0.95 16 4 C 0.15 1.44 2.52 -67.79 -0.17 1.27 16 5 H 0.10 1.22 7.57 -51.93 -0.39 0.82 16 6 N -0.74 -7.28 5.09 -58.54 -0.30 -7.58 16 7 C 0.70 10.80 8.37 -86.92 -0.73 10.07 16 8 O -0.56 -11.51 13.47 5.29 0.07 -11.44 16 9 N -0.68 -10.40 5.34 -14.27 -0.08 -10.47 16 10 C 0.18 3.58 6.28 -83.76 -0.53 3.05 16 11 C -0.26 -5.16 9.97 -39.10 -0.39 -5.55 16 12 C -0.07 -1.37 10.02 -39.69 -0.40 -1.77 16 13 C -0.25 -6.02 6.99 -38.84 -0.27 -6.29 16 14 C 0.10 2.64 5.13 -106.85 -0.55 2.09 16 15 C -0.44 -12.28 9.60 -37.74 -0.36 -12.65 16 16 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 17 C 0.08 2.21 5.47 -17.35 -0.09 2.11 16 18 N -0.82 -22.31 13.93 55.55 0.77 -21.54 16 19 Si 0.92 21.48 24.40 -169.99 -4.15 17.33 16 20 H -0.27 -6.08 6.67 56.52 0.38 -5.70 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.24 -5.88 6.66 56.52 0.38 -5.51 16 23 C -0.19 -4.68 8.43 -38.68 -0.33 -5.00 16 24 C -0.13 -0.82 5.52 -26.52 -0.15 -0.97 16 25 C -0.13 -0.98 6.03 -28.10 -0.17 -1.15 16 26 C 0.51 5.86 7.47 -11.87 -0.09 5.77 16 27 O -0.56 -8.36 15.95 5.56 0.09 -8.27 16 28 H 0.09 1.01 6.59 -51.93 -0.34 0.66 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.07 8.11 -51.93 -0.42 0.64 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 2.48 8.62 -40.82 -0.35 2.12 16 34 H 0.40 4.33 8.84 -40.82 -0.36 3.97 16 35 H 0.09 1.55 8.06 -52.48 -0.42 1.13 16 36 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.10 2.40 4.39 -52.49 -0.23 2.17 16 38 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 39 H 0.12 3.03 6.25 -52.49 -0.33 2.71 16 40 H 0.08 0.39 8.13 -51.92 -0.42 -0.03 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 349.92 15.07 5.27 5.27 Total: -1.00 -34.06 349.92 -8.36 -42.42 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.84 Total: 8.00 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -3.62 Total: -6.75 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.19 Total: -46.57 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.16 Total: -19.71 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.15 Total: 17.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.06 -8.36 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414447490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.952 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds