Wall clock time and date at job start Tue Mar 31 2020 11:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.45823 * 117.88753 * 2 1 4 4 C 1.52925 * 110.45300 * 161.06931 * 3 2 1 5 5 H 1.08997 * 109.60331 * 290.66398 * 4 3 2 6 6 N 1.46502 * 109.60192 * 170.33493 * 4 3 2 7 7 C 1.34775 * 119.99568 * 85.32515 * 6 4 3 8 8 O 1.21586 * 120.00167 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99979 * 179.97438 * 7 6 4 10 10 C 1.39958 * 120.00100 * 184.42327 * 9 7 6 11 11 C 1.39285 * 119.94916 * 144.76422 * 10 9 7 12 12 C 1.38486 * 120.43118 * 179.97438 * 11 10 9 13 13 C 1.37682 * 120.32190 * 359.97438 * 12 11 10 14 14 C 1.40740 * 119.88333 * 0.02562 * 13 12 11 15 15 C 1.41406 * 120.21382 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00485 * 148.84209 * 15 14 13 17 17 C 1.39931 * 119.99788 * 328.84487 * 15 14 13 18 18 N 1.30827 * 120.00540 * 167.79380 * 17 15 14 19 19 Si 1.86808 * 119.99966 * 347.79171 * 17 15 14 20 20 H 1.48501 * 109.46976 * 92.58431 * 19 17 15 21 21 H 1.48491 * 109.47377 * 212.58475 * 19 17 15 22 22 H 1.48503 * 109.46827 * 332.58746 * 19 17 15 23 23 C 1.38237 * 119.94483 * 324.48180 * 10 9 7 24 24 C 1.53344 * 108.80803 * 50.50189 * 4 3 2 25 25 C 1.53072 * 108.42845 * 292.55074 * 24 4 3 26 26 C 1.33356 * 117.95014 * 179.83253 * 2 1 3 27 27 O 1.21279 * 118.24214 * 2.24564 * 26 2 1 28 28 H 1.08997 * 109.46972 * 180.17095 * 1 2 3 29 29 H 1.09004 * 109.46923 * 300.16321 * 1 2 3 30 30 H 1.09002 * 109.47312 * 60.16383 * 1 2 3 31 31 H 1.09005 * 109.45582 * 40.68224 * 3 2 1 32 32 H 1.08995 * 109.17881 * 281.28813 * 3 2 1 33 33 H 0.96994 * 120.00516 * 265.33106 * 6 4 3 34 34 H 0.97001 * 120.00269 * 4.69803 * 9 7 6 35 35 H 1.08007 * 119.78629 * 359.95341 * 11 10 9 36 36 H 1.08004 * 119.83843 * 179.97438 * 12 11 10 37 37 H 1.07998 * 120.06034 * 180.02562 * 13 12 11 38 38 H 0.96995 * 120.00503 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.15927 * 0.02562 * 23 10 9 40 40 H 1.09008 * 109.67568 * 52.28103 * 24 4 3 41 41 H 1.09000 * 109.67609 * 172.81429 * 24 4 3 42 42 H 1.08995 * 109.40350 * 169.02756 * 25 24 4 43 43 H 1.09002 * 109.39812 * 288.77635 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1470 1.2889 0.0000 4 6 3.5949 1.1273 0.4648 5 1 3.6127 0.8783 1.5259 6 7 4.3255 2.3772 0.2408 7 6 4.2824 3.3576 1.1646 8 8 3.6377 3.2046 2.1840 9 7 4.9549 4.5074 0.9588 10 6 4.9865 5.4879 1.9571 11 6 6.1324 6.2584 2.1389 12 6 6.1744 7.2317 3.1232 13 6 5.0824 7.4486 3.9332 14 6 3.9176 6.6778 3.7612 15 6 2.7918 6.8951 4.5888 16 1 1.7973 6.7249 4.2035 17 6 2.9663 7.3307 5.9071 18 7 1.9399 7.7595 6.5957 19 14 4.6649 7.2999 6.6839 20 1 5.3251 8.6148 6.4827 21 1 4.5394 7.0264 8.1380 22 1 5.4806 6.2341 6.0482 23 6 3.8782 5.6940 2.7571 24 6 4.2493 -0.0023 -0.3397 25 6 3.5839 -1.3239 0.0523 26 6 2.0900 -1.1780 0.0034 27 8 1.4159 -2.1855 -0.0355 28 1 -0.3633 -1.0276 0.0031 29 1 -0.3633 0.5164 0.8886 30 1 -0.3634 0.5113 -0.8915 31 1 1.6279 1.9744 0.6700 32 1 2.1364 1.6996 -1.0095 33 1 4.8400 2.4993 -0.5723 34 1 5.4137 4.6570 0.1174 35 1 6.9941 6.0956 1.5083 36 1 7.0681 7.8234 3.2560 37 1 5.1197 8.2090 4.6992 38 1 2.0608 8.0611 7.5096 39 1 2.9877 5.0999 2.6142 40 1 4.1087 0.1773 -1.4057 41 1 5.3143 -0.0459 -0.1118 42 1 3.8943 -2.1053 -0.6413 43 1 3.8880 -1.5966 1.0628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414447490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:43 Heat of formation + Delta-G solvation = -60.359143 kcal Electronic energy + Delta-G solvation = -26079.517020 eV Core-core repulsion = 22316.439587 eV Total energy + Delta-G solvation = -3763.077432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.89774 -41.20853 -39.43708 -37.90081 -36.14610 -35.80413 -35.00938 -33.90618 -32.14215 -30.67584 -29.36480 -28.03192 -27.09979 -25.46881 -23.96474 -22.87428 -22.63088 -21.80689 -20.08533 -19.62427 -19.12824 -18.02222 -17.72962 -17.57950 -17.32877 -16.82365 -16.44033 -16.35383 -15.92304 -15.50810 -15.35047 -14.99415 -14.95228 -14.59751 -14.37595 -14.26900 -13.89813 -13.69029 -13.40226 -13.31343 -13.02519 -12.89550 -12.84923 -12.61722 -12.48412 -12.41535 -11.89035 -11.75684 -11.68358 -11.41529 -10.89381 -10.86494 -10.77296 -10.28079 -9.84400 -9.48481 -8.85612 -8.78755 -6.51568 0.74546 0.84571 1.25140 1.42116 1.47977 1.50798 1.52647 1.98606 2.12411 2.17428 2.66101 3.19102 3.52305 3.54024 3.62229 3.63177 3.94780 4.20809 4.34944 4.36668 4.39762 4.50949 4.53339 4.57798 4.64398 4.67053 4.82387 4.86647 4.91476 5.01511 5.05516 5.06316 5.09782 5.23318 5.36401 5.39591 5.62105 5.75146 5.83402 5.95886 6.12816 6.28475 6.33659 6.42566 6.77387 6.83458 7.02184 7.10802 7.59439 8.24156 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.003055 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.416567 B = 9164.120910 C =10087.500280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.103 3.897 4 C 0.152 3.848 5 H 0.071 0.929 6 N -0.711 5.711 7 C 0.694 3.306 8 O -0.614 6.614 9 N -0.666 5.666 10 C 0.185 3.815 11 C -0.233 4.233 12 C -0.066 4.066 13 C -0.262 4.262 14 C 0.080 3.920 15 C -0.486 4.486 16 H 0.044 0.956 17 C 0.040 3.960 18 N -0.863 5.863 19 Si 0.975 3.025 20 H -0.249 1.249 21 H -0.284 1.284 22 H -0.254 1.254 23 C -0.219 4.219 24 C -0.115 4.115 25 C -0.124 4.124 26 C 0.505 3.495 27 O -0.601 6.601 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.421 0.579 34 H 0.424 0.576 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.292 0.708 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.127 0.873 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.427 -12.138 -17.935 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.335 5.335 3 C -0.021 4.021 4 C 0.045 3.955 5 H 0.089 0.911 6 N -0.369 5.369 7 C 0.395 3.605 8 O -0.493 6.493 9 N -0.315 5.315 10 C 0.091 3.909 11 C -0.254 4.254 12 C -0.085 4.085 13 C -0.282 4.282 14 C 0.077 3.923 15 C -0.517 4.517 16 H 0.062 0.938 17 C -0.172 4.172 18 N -0.491 5.491 19 Si 0.799 3.201 20 H -0.174 1.174 21 H -0.211 1.211 22 H -0.177 1.177 23 C -0.241 4.241 24 C -0.152 4.152 25 C -0.164 4.164 26 C 0.295 3.705 27 O -0.484 6.484 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.260 0.740 34 H 0.262 0.738 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.145 0.855 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.360 -12.730 -16.878 23.120 hybrid contribution -0.339 0.456 0.280 0.633 sum 9.021 -12.274 -16.598 22.528 Atomic orbital electron populations 1.21852 0.79318 1.04017 1.02609 1.47249 1.08098 1.06155 1.72010 1.21882 0.93587 0.83762 1.02865 1.20955 0.89703 0.83749 1.01095 0.91095 1.44645 1.54656 1.14733 1.22821 1.16230 0.79921 0.80825 0.83540 1.91020 1.47010 1.81163 1.30078 1.42259 1.55544 1.14929 1.18782 1.17339 0.93472 0.89725 0.90395 1.20645 0.97137 1.02762 1.04851 1.20867 0.97087 0.96718 0.93807 1.21188 0.96821 1.04451 1.05745 1.17758 0.92488 0.89881 0.92171 1.19447 0.93694 1.40990 0.97532 0.93817 1.26884 1.02733 0.90273 0.97326 1.69697 1.34682 1.32781 1.11899 0.85385 0.77897 0.80952 0.75913 1.17363 1.21090 1.17748 1.21079 0.98650 1.01062 1.03264 1.21927 1.01830 0.90203 1.01284 1.21638 0.87883 1.00448 1.06406 1.20971 0.92676 0.82131 0.74682 1.90682 1.67669 1.37007 1.53016 0.90227 0.92106 0.90136 0.92327 0.88888 0.74022 0.73755 0.83451 0.84146 0.88381 0.89778 0.88923 0.87968 0.87024 0.85484 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.32 10.47 127.77 1.34 2.66 16 2 N -0.60 -12.66 3.21 -851.44 -2.73 -15.40 16 3 C 0.10 1.94 5.99 86.48 0.52 2.46 16 4 C 0.15 2.55 2.52 45.08 0.11 2.67 16 5 H 0.07 1.69 7.57 -2.39 -0.02 1.67 16 6 N -0.71 -11.66 5.09 -457.38 -2.33 -13.99 16 7 C 0.69 20.31 8.37 179.06 1.50 21.81 16 8 O -0.61 -25.98 13.47 -3.99 -0.05 -26.03 16 9 N -0.67 -18.06 5.34 -317.33 -1.69 -19.76 16 10 C 0.19 7.08 6.28 38.09 0.24 7.32 16 11 C -0.23 -7.85 9.97 22.58 0.23 -7.62 16 12 C -0.07 -2.49 10.02 22.20 0.22 -2.26 16 13 C -0.26 -12.33 6.99 22.75 0.16 -12.17 16 14 C 0.08 4.30 5.13 -21.31 -0.11 4.19 16 15 C -0.49 -29.44 9.60 23.46 0.23 -29.22 16 16 H 0.04 2.90 8.06 -2.91 -0.02 2.87 16 17 C 0.04 2.29 5.47 85.25 0.47 2.75 16 18 N -0.86 -50.38 13.93 21.82 0.30 -50.08 16 19 Si 0.97 45.09 24.40 68.60 1.67 46.76 16 20 H -0.25 -10.45 6.67 99.48 0.66 -9.79 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.25 -12.00 6.66 99.48 0.66 -11.34 16 23 C -0.22 -10.86 8.43 22.85 0.19 -10.66 16 24 C -0.11 -0.96 5.52 30.73 0.17 -0.79 16 25 C -0.12 -1.57 6.03 29.71 0.18 -1.39 16 26 C 0.50 11.15 7.47 87.71 0.66 11.81 16 27 O -0.60 -18.17 15.95 -3.03 -0.05 -18.22 16 28 H 0.08 1.84 6.59 -2.39 -0.02 1.83 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.48 8.11 -2.38 -0.02 1.46 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.42 3.04 8.62 -92.71 -0.80 2.24 16 34 H 0.42 6.91 8.84 -92.71 -0.82 6.09 16 35 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.10 4.59 4.39 -2.91 -0.01 4.58 16 38 H 0.29 15.28 8.30 -92.71 -0.77 14.51 16 39 H 0.09 5.05 6.25 -2.91 -0.02 5.03 16 40 H 0.10 0.45 8.13 -2.38 -0.02 0.43 16 41 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -83.46 349.92 0.57 -82.90 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -0.65 Total: 22.26 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 6.09 Total: -8.44 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -6.45 Total: -99.22 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -0.10 Total: -44.25 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.67 Total: 46.76 kcal Total: -83.46 0.57 -82.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414447490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.537 kcal (2) G-P(sol) polarization free energy of solvation -83.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds