Wall clock time and date at job start Tue Mar 31 2020 11:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.45754 * 117.95044 * 2 1 4 4 C 1.52739 * 110.58759 * 198.89458 * 3 2 1 5 5 H 1.08994 * 109.53326 * 69.41712 * 4 3 2 6 6 N 1.46506 * 109.66073 * 189.73068 * 4 3 2 7 7 C 1.34772 * 119.99874 * 274.40302 * 6 4 3 8 8 O 1.21579 * 120.00394 * 359.97438 * 7 6 4 9 9 N 1.34781 * 119.99687 * 179.97438 * 7 6 4 10 10 C 1.39954 * 119.99852 * 174.95883 * 9 7 6 11 11 C 1.39285 * 119.94685 * 146.74389 * 10 9 7 12 12 C 1.38489 * 120.43127 * 180.02562 * 11 10 9 13 13 C 1.37683 * 120.32100 * 359.97438 * 12 11 10 14 14 C 1.40740 * 119.88348 * 0.02562 * 13 12 11 15 15 C 1.41406 * 120.20946 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00066 * 151.43426 * 15 14 13 17 17 C 1.39935 * 119.99931 * 331.42834 * 15 14 13 18 18 N 1.30831 * 119.99554 * 166.26161 * 17 15 14 19 19 Si 1.86796 * 120.00228 * 346.26275 * 17 15 14 20 20 H 1.48501 * 109.47000 * 95.31178 * 19 17 15 21 21 H 1.48495 * 109.47106 * 215.31142 * 19 17 15 22 22 H 1.48496 * 109.47090 * 335.31466 * 19 17 15 23 23 C 1.38238 * 119.94714 * 326.47660 * 10 9 7 24 24 C 1.53350 * 108.81973 * 309.60808 * 4 3 2 25 25 C 1.53069 * 108.42183 * 67.37232 * 24 4 3 26 26 C 1.33359 * 117.94365 * 180.26657 * 2 1 3 27 27 O 1.21279 * 118.24492 * 357.74956 * 26 2 1 28 28 H 1.09006 * 109.47614 * 179.73708 * 1 2 3 29 29 H 1.09007 * 109.47261 * 299.73782 * 1 2 3 30 30 H 1.08996 * 109.47090 * 59.73506 * 1 2 3 31 31 H 1.09005 * 109.29835 * 319.38696 * 3 2 1 32 32 H 1.08996 * 109.29837 * 78.75962 * 3 2 1 33 33 H 0.96998 * 119.99608 * 94.39946 * 6 4 3 34 34 H 0.96997 * 120.00284 * 354.96523 * 9 7 6 35 35 H 1.07999 * 119.78297 * 0.02562 * 11 10 9 36 36 H 1.08005 * 119.84064 * 180.02562 * 12 11 10 37 37 H 1.07998 * 120.05660 * 180.02562 * 13 12 11 38 38 H 0.97002 * 119.99866 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.16389 * 359.97438 * 23 10 9 40 40 H 1.08998 * 109.67347 * 307.63909 * 24 4 3 41 41 H 1.08999 * 109.67230 * 187.10877 * 24 4 3 42 42 H 1.08996 * 109.40015 * 190.96954 * 25 24 4 43 43 H 1.09010 * 109.40033 * 71.22815 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5949 1.1279 -0.4630 5 1 3.6126 0.8808 -1.5244 6 7 4.3255 2.3775 -0.2370 7 6 4.2877 3.3569 -1.1620 8 8 3.6478 3.2033 -2.1843 9 7 4.9595 4.5067 -0.9538 10 6 5.0076 5.4806 -1.9577 11 6 5.0425 6.8304 -1.6159 12 6 5.0897 7.8025 -2.6012 13 6 5.1033 7.4447 -3.9306 14 6 5.0684 6.0847 -4.2911 15 6 5.0826 5.7094 -5.6544 16 1 5.5066 4.7609 -5.9490 17 6 4.5471 6.5671 -6.6218 18 7 4.7933 6.3580 -7.8896 19 14 3.4808 8.0104 -6.1030 20 1 4.3176 9.2331 -6.0026 21 1 2.4118 8.2237 -7.1114 22 1 2.8655 7.7219 -4.7827 23 6 5.0261 5.1012 -3.2869 24 6 4.2492 -0.0031 0.3397 25 6 3.5837 -1.3239 -0.0547 26 6 2.0899 -1.1781 -0.0055 27 8 1.4157 -2.1856 0.0318 28 1 -0.3634 -1.0277 -0.0047 29 1 -0.3634 0.5098 0.8924 30 1 -0.3633 0.5179 -0.8876 31 1 1.6271 1.9718 -0.6697 32 1 2.1398 1.6997 1.0090 33 1 4.8363 2.4999 0.5785 34 1 5.4096 4.6591 -0.1082 35 1 5.0327 7.1208 -0.5757 36 1 5.1169 8.8464 -2.3253 37 1 5.1406 8.2063 -4.6954 38 1 4.4224 6.9527 -8.5602 39 1 5.0039 4.0548 -3.5529 40 1 4.1087 0.1747 1.4058 41 1 5.3142 -0.0463 0.1116 42 1 3.8941 -2.1065 0.6376 43 1 3.8879 -1.5950 -1.0657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414447491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:47 Heat of formation + Delta-G solvation = -34.697281 kcal Electronic energy + Delta-G solvation = -26053.416109 eV Core-core repulsion = 22291.451458 eV Total energy + Delta-G solvation = -3761.964651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93694 -39.99505 -37.90096 -36.79542 -34.93511 -34.48169 -33.33779 -32.91597 -30.32428 -29.41850 -28.15851 -27.17932 -25.21692 -24.66150 -22.82653 -21.72106 -20.87459 -20.41641 -19.17566 -18.07271 -17.81352 -16.96146 -16.75662 -16.39371 -16.00114 -15.49367 -15.08377 -14.74387 -14.67182 -14.48453 -14.17042 -14.02927 -13.56005 -13.43081 -12.90817 -12.76616 -12.71820 -12.49928 -12.28060 -12.08324 -11.96524 -11.72531 -11.65132 -11.24985 -11.07352 -10.73474 -10.69680 -10.02479 -9.97510 -9.94288 -9.62640 -9.34239 -9.17390 -9.07093 -8.95798 -7.66805 -7.11953 -6.90222 -4.46523 2.37899 2.43567 2.54256 2.64230 2.93266 3.12943 3.26512 3.36155 3.46196 4.02596 4.17332 4.22829 4.32728 4.43618 4.53778 4.63708 4.89769 4.97715 5.15660 5.26169 5.29708 5.35094 5.44038 5.46071 5.60309 5.67106 5.73615 5.95809 6.07483 6.17850 6.29478 6.38386 6.52373 6.64962 6.81952 6.98797 7.16664 7.22022 7.45470 7.56570 7.63300 7.88794 7.90649 8.06174 8.22183 8.38938 8.67215 8.78008 8.85420 10.12256 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.002973 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.797026 B = 9414.689417 C =10008.230763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.602 5.602 3 C 0.100 3.900 4 C 0.152 3.848 5 H 0.102 0.898 6 N -0.742 5.742 7 C 0.698 3.302 8 O -0.558 6.558 9 N -0.680 5.680 10 C 0.180 3.820 11 C -0.267 4.267 12 C -0.063 4.063 13 C -0.251 4.251 14 C 0.103 3.897 15 C -0.437 4.437 16 H 0.090 0.910 17 C 0.081 3.919 18 N -0.812 5.812 19 Si 0.916 3.084 20 H -0.272 1.272 21 H -0.294 1.294 22 H -0.240 1.240 23 C -0.197 4.197 24 C -0.131 4.131 25 C -0.129 4.129 26 C 0.514 3.486 27 O -0.558 6.558 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.397 0.603 34 H 0.397 0.603 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.285 0.715 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 -8.141 18.145 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.334 5.334 3 C -0.024 4.024 4 C 0.046 3.954 5 H 0.120 0.880 6 N -0.399 5.399 7 C 0.398 3.602 8 O -0.432 6.432 9 N -0.327 5.327 10 C 0.087 3.913 11 C -0.289 4.289 12 C -0.082 4.082 13 C -0.270 4.270 14 C 0.099 3.901 15 C -0.466 4.466 16 H 0.108 0.892 17 C -0.137 4.137 18 N -0.436 5.436 19 Si 0.744 3.256 20 H -0.199 1.199 21 H -0.222 1.222 22 H -0.164 1.164 23 C -0.219 4.219 24 C -0.169 4.169 25 C -0.169 4.169 26 C 0.303 3.697 27 O -0.437 6.437 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.231 0.769 34 H 0.230 0.770 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.469 -8.821 16.907 19.229 hybrid contribution 0.016 1.044 0.870 1.359 sum -2.453 -7.777 17.777 19.558 Atomic orbital electron populations 1.21808 0.79271 1.04651 1.01670 1.47101 1.07751 1.05870 1.72721 1.21855 0.93723 0.84660 1.02211 1.20871 0.89502 0.83071 1.02004 0.88044 1.44997 1.55629 1.16165 1.23097 1.15988 0.80347 0.80305 0.83568 1.91027 1.45388 1.79869 1.26951 1.42578 1.55112 1.16577 1.18398 1.17263 1.00388 0.86437 0.87162 1.19991 1.20617 0.90775 0.97481 1.20328 0.98104 0.96880 0.92876 1.20961 1.15031 0.96055 0.94972 1.17604 0.88359 0.90688 0.93421 1.19506 1.33133 1.04769 0.89186 0.89205 1.26179 0.95123 0.98041 0.94342 1.69667 1.35840 1.36315 1.01780 0.86256 0.79474 0.80073 0.79814 1.19885 1.22234 1.16357 1.20957 1.11513 0.99314 0.90103 1.21970 1.01315 0.93027 1.00625 1.21587 0.90835 0.98973 1.05538 1.20207 0.91063 0.82780 0.75649 1.90701 1.66377 1.35740 1.50906 0.88940 0.92166 0.91809 0.89467 0.91426 0.76946 0.76952 0.88730 0.88498 0.88414 0.90471 0.86694 0.90497 0.89337 0.87519 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.47 59.84 0.63 1.28 16 2 N -0.60 -6.30 3.21 -182.97 -0.59 -6.89 16 3 C 0.10 0.97 5.98 -4.58 -0.03 0.94 16 4 C 0.15 1.44 2.52 -67.88 -0.17 1.27 16 5 H 0.10 1.24 7.56 -51.93 -0.39 0.85 16 6 N -0.74 -7.33 5.09 -58.63 -0.30 -7.62 16 7 C 0.70 10.85 8.27 -86.92 -0.72 10.13 16 8 O -0.56 -11.56 13.69 5.30 0.07 -11.48 16 9 N -0.68 -10.45 5.35 -14.27 -0.08 -10.52 16 10 C 0.18 3.69 6.27 -83.76 -0.53 3.16 16 11 C -0.27 -5.26 9.97 -39.10 -0.39 -5.65 16 12 C -0.06 -1.33 10.02 -39.69 -0.40 -1.73 16 13 C -0.25 -6.05 6.94 -38.84 -0.27 -6.32 16 14 C 0.10 2.68 5.18 -106.85 -0.55 2.12 16 15 C -0.44 -12.21 9.61 -37.74 -0.36 -12.58 16 16 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 17 C 0.08 2.19 5.46 -17.34 -0.09 2.10 16 18 N -0.81 -22.13 13.93 55.55 0.77 -21.36 16 19 Si 0.92 21.40 24.37 -169.99 -4.14 17.26 16 20 H -0.27 -6.08 6.76 56.52 0.38 -5.70 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.24 -5.79 6.51 56.52 0.37 -5.42 16 23 C -0.20 -4.78 8.39 -38.68 -0.32 -5.11 16 24 C -0.13 -0.83 5.52 -26.51 -0.15 -0.98 16 25 C -0.13 -1.00 6.03 -28.10 -0.17 -1.17 16 26 C 0.51 5.84 7.47 -11.87 -0.09 5.75 16 27 O -0.56 -8.32 15.95 5.56 0.09 -8.23 16 28 H 0.09 0.99 6.59 -51.93 -0.34 0.64 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 2.50 8.63 -40.82 -0.35 2.15 16 34 H 0.40 4.35 8.83 -40.82 -0.36 3.99 16 35 H 0.09 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.10 2.35 4.22 -52.49 -0.22 2.13 16 38 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 39 H 0.12 2.92 6.41 -52.49 -0.34 2.58 16 40 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.11 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -34.08 349.86 -8.35 -42.43 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.84 Total: 7.90 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.61 Total: -6.76 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.19 Total: -46.39 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.16 Total: -19.72 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.08 -8.35 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414447491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.734 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds