Wall clock time and date at job start Tue Mar 31 2020 11:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.45754 * 117.95044 * 2 1 4 4 C 1.52739 * 110.58759 * 198.89458 * 3 2 1 5 5 H 1.08994 * 109.53326 * 69.41712 * 4 3 2 6 6 N 1.46506 * 109.66073 * 189.73068 * 4 3 2 7 7 C 1.34772 * 119.99874 * 274.40302 * 6 4 3 8 8 O 1.21579 * 120.00394 * 359.97438 * 7 6 4 9 9 N 1.34781 * 119.99687 * 179.97438 * 7 6 4 10 10 C 1.39954 * 119.99852 * 174.95883 * 9 7 6 11 11 C 1.39285 * 119.94685 * 146.74389 * 10 9 7 12 12 C 1.38489 * 120.43127 * 180.02562 * 11 10 9 13 13 C 1.37683 * 120.32100 * 359.97438 * 12 11 10 14 14 C 1.40740 * 119.88348 * 0.02562 * 13 12 11 15 15 C 1.41406 * 120.20946 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00066 * 151.43426 * 15 14 13 17 17 C 1.39935 * 119.99931 * 331.42834 * 15 14 13 18 18 N 1.30831 * 119.99554 * 166.26161 * 17 15 14 19 19 Si 1.86796 * 120.00228 * 346.26275 * 17 15 14 20 20 H 1.48501 * 109.47000 * 95.31178 * 19 17 15 21 21 H 1.48495 * 109.47106 * 215.31142 * 19 17 15 22 22 H 1.48496 * 109.47090 * 335.31466 * 19 17 15 23 23 C 1.38238 * 119.94714 * 326.47660 * 10 9 7 24 24 C 1.53350 * 108.81973 * 309.60808 * 4 3 2 25 25 C 1.53069 * 108.42183 * 67.37232 * 24 4 3 26 26 C 1.33359 * 117.94365 * 180.26657 * 2 1 3 27 27 O 1.21279 * 118.24492 * 357.74956 * 26 2 1 28 28 H 1.09006 * 109.47614 * 179.73708 * 1 2 3 29 29 H 1.09007 * 109.47261 * 299.73782 * 1 2 3 30 30 H 1.08996 * 109.47090 * 59.73506 * 1 2 3 31 31 H 1.09005 * 109.29835 * 319.38696 * 3 2 1 32 32 H 1.08996 * 109.29837 * 78.75962 * 3 2 1 33 33 H 0.96998 * 119.99608 * 94.39946 * 6 4 3 34 34 H 0.96997 * 120.00284 * 354.96523 * 9 7 6 35 35 H 1.07999 * 119.78297 * 0.02562 * 11 10 9 36 36 H 1.08005 * 119.84064 * 180.02562 * 12 11 10 37 37 H 1.07998 * 120.05660 * 180.02562 * 13 12 11 38 38 H 0.97002 * 119.99866 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.16389 * 359.97438 * 23 10 9 40 40 H 1.08998 * 109.67347 * 307.63909 * 24 4 3 41 41 H 1.08999 * 109.67230 * 187.10877 * 24 4 3 42 42 H 1.08996 * 109.40015 * 190.96954 * 25 24 4 43 43 H 1.09010 * 109.40033 * 71.22815 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5949 1.1279 -0.4630 5 1 3.6126 0.8808 -1.5244 6 7 4.3255 2.3775 -0.2370 7 6 4.2877 3.3569 -1.1620 8 8 3.6478 3.2033 -2.1843 9 7 4.9595 4.5067 -0.9538 10 6 5.0076 5.4806 -1.9577 11 6 5.0425 6.8304 -1.6159 12 6 5.0897 7.8025 -2.6012 13 6 5.1033 7.4447 -3.9306 14 6 5.0684 6.0847 -4.2911 15 6 5.0826 5.7094 -5.6544 16 1 5.5066 4.7609 -5.9490 17 6 4.5471 6.5671 -6.6218 18 7 4.7933 6.3580 -7.8896 19 14 3.4808 8.0104 -6.1030 20 1 4.3176 9.2331 -6.0026 21 1 2.4118 8.2237 -7.1114 22 1 2.8655 7.7219 -4.7827 23 6 5.0261 5.1012 -3.2869 24 6 4.2492 -0.0031 0.3397 25 6 3.5837 -1.3239 -0.0547 26 6 2.0899 -1.1781 -0.0055 27 8 1.4157 -2.1856 0.0318 28 1 -0.3634 -1.0277 -0.0047 29 1 -0.3634 0.5098 0.8924 30 1 -0.3633 0.5179 -0.8876 31 1 1.6271 1.9718 -0.6697 32 1 2.1398 1.6997 1.0090 33 1 4.8363 2.4999 0.5785 34 1 5.4096 4.6591 -0.1082 35 1 5.0327 7.1208 -0.5757 36 1 5.1169 8.8464 -2.3253 37 1 5.1406 8.2063 -4.6954 38 1 4.4224 6.9527 -8.5602 39 1 5.0039 4.0548 -3.5529 40 1 4.1087 0.1747 1.4058 41 1 5.3142 -0.0463 0.1116 42 1 3.8941 -2.1065 0.6376 43 1 3.8879 -1.5950 -1.0657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414447491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:46 Heat of formation + Delta-G solvation = -60.602581 kcal Electronic energy + Delta-G solvation = -26054.539447 eV Core-core repulsion = 22291.451458 eV Total energy + Delta-G solvation = -3763.087989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90386 -41.21110 -39.44118 -37.90976 -36.16051 -35.80265 -35.02159 -33.91052 -32.15013 -30.67723 -29.38235 -28.02676 -27.10648 -25.46549 -23.98445 -22.88706 -22.65730 -21.77635 -20.11157 -19.62534 -19.11397 -18.02041 -17.75013 -17.62223 -17.32712 -16.81021 -16.41352 -16.38301 -15.86128 -15.61967 -15.23551 -15.08689 -14.90221 -14.59021 -14.37059 -14.29808 -13.89739 -13.67796 -13.39817 -13.32649 -13.05518 -12.88429 -12.82042 -12.62894 -12.46950 -12.45007 -11.89974 -11.76028 -11.64071 -11.42339 -10.97448 -10.85721 -10.80151 -10.26774 -9.83414 -9.50807 -8.87942 -8.76121 -6.51791 0.75265 0.84379 1.25080 1.42599 1.48059 1.50826 1.51712 1.99818 2.12700 2.16862 2.65793 3.18723 3.52339 3.55406 3.61558 3.63538 3.94498 4.20975 4.34639 4.35572 4.40291 4.51370 4.54274 4.56877 4.63184 4.67310 4.82481 4.87315 4.90383 5.01046 5.04485 5.05894 5.08839 5.24122 5.35066 5.38769 5.61142 5.74230 5.83015 5.94828 6.13235 6.27349 6.33195 6.41811 6.76838 6.82608 7.02209 7.10348 7.58760 8.21591 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.002973 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.797026 B = 9414.689417 C =10008.230763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.105 3.895 4 C 0.150 3.850 5 H 0.068 0.932 6 N -0.711 5.711 7 C 0.695 3.305 8 O -0.614 6.614 9 N -0.666 5.666 10 C 0.190 3.810 11 C -0.237 4.237 12 C -0.064 4.064 13 C -0.264 4.264 14 C 0.082 3.918 15 C -0.484 4.484 16 H 0.044 0.956 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.975 3.025 20 H -0.250 1.250 21 H -0.284 1.284 22 H -0.251 1.251 23 C -0.222 4.222 24 C -0.116 4.116 25 C -0.125 4.125 26 C 0.505 3.495 27 O -0.601 6.601 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.421 0.579 34 H 0.424 0.576 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.293 0.707 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.127 0.873 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 -6.225 23.078 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.335 5.335 3 C -0.019 4.019 4 C 0.044 3.956 5 H 0.086 0.914 6 N -0.369 5.369 7 C 0.395 3.605 8 O -0.493 6.493 9 N -0.315 5.315 10 C 0.095 3.905 11 C -0.259 4.259 12 C -0.082 4.082 13 C -0.284 4.284 14 C 0.079 3.921 15 C -0.515 4.515 16 H 0.062 0.938 17 C -0.172 4.172 18 N -0.486 5.486 19 Si 0.799 3.201 20 H -0.175 1.175 21 H -0.212 1.212 22 H -0.175 1.175 23 C -0.244 4.244 24 C -0.153 4.153 25 C -0.165 4.165 26 C 0.296 3.704 27 O -0.483 6.483 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.260 0.740 34 H 0.262 0.738 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.922 -6.911 21.933 23.077 hybrid contribution -0.119 0.341 -0.374 0.519 sum -2.040 -6.571 21.560 22.631 Atomic orbital electron populations 1.21862 0.79119 1.04017 1.02736 1.47230 1.08180 1.06094 1.71993 1.21815 0.93249 0.83797 1.03032 1.20918 0.90040 0.83718 1.00973 0.91398 1.44647 1.54861 1.14678 1.22681 1.16214 0.79755 0.80927 0.83566 1.91022 1.47700 1.80857 1.29677 1.42297 1.55192 1.15674 1.18352 1.17313 0.98121 0.88290 0.86738 1.20598 1.15848 0.89544 0.99869 1.20851 0.96297 0.99597 0.91505 1.21102 1.15594 0.94799 0.96894 1.17726 0.89237 0.92418 0.92741 1.19472 1.36579 1.04050 0.91356 0.93784 1.26918 0.95799 1.00431 0.94102 1.69708 1.37971 1.38231 1.02690 0.85370 0.78130 0.77735 0.78866 1.17483 1.21160 1.17452 1.20901 1.13482 0.97873 0.92179 1.21926 1.01704 0.90306 1.01397 1.21634 0.88149 1.00452 1.06265 1.20912 0.92543 0.82250 0.74717 1.90681 1.67609 1.37041 1.52999 0.90370 0.89953 0.91916 0.91988 0.88653 0.74030 0.73761 0.83530 0.84188 0.88548 0.89687 0.89438 0.87767 0.87412 0.85533 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 10.47 127.77 1.34 2.57 16 2 N -0.60 -12.15 3.21 -851.97 -2.74 -14.89 16 3 C 0.11 1.86 5.98 86.43 0.52 2.38 16 4 C 0.15 2.57 2.52 45.02 0.11 2.68 16 5 H 0.07 1.68 7.56 -2.39 -0.02 1.66 16 6 N -0.71 -11.86 5.09 -457.67 -2.33 -14.19 16 7 C 0.69 20.46 8.27 179.05 1.48 21.94 16 8 O -0.61 -26.04 13.69 -3.97 -0.05 -26.09 16 9 N -0.67 -18.19 5.35 -317.33 -1.70 -19.89 16 10 C 0.19 7.30 6.27 38.10 0.24 7.54 16 11 C -0.24 -8.06 9.97 22.58 0.23 -7.84 16 12 C -0.06 -2.41 10.02 22.20 0.22 -2.19 16 13 C -0.26 -12.44 6.94 22.75 0.16 -12.28 16 14 C 0.08 4.40 5.18 -21.31 -0.11 4.29 16 15 C -0.48 -29.28 9.61 23.46 0.23 -29.05 16 16 H 0.04 2.91 8.06 -2.91 -0.02 2.89 16 17 C 0.04 2.30 5.46 85.25 0.47 2.76 16 18 N -0.86 -49.86 13.93 21.82 0.30 -49.55 16 19 Si 0.98 44.90 24.37 68.60 1.67 46.57 16 20 H -0.25 -10.46 6.76 99.48 0.67 -9.79 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.25 -11.80 6.51 99.48 0.65 -11.15 16 23 C -0.22 -11.06 8.39 22.85 0.19 -10.87 16 24 C -0.12 -1.05 5.52 30.73 0.17 -0.88 16 25 C -0.13 -1.67 6.03 29.71 0.18 -1.50 16 26 C 0.51 11.12 7.47 87.71 0.66 11.78 16 27 O -0.60 -18.09 15.95 -3.02 -0.05 -18.13 16 28 H 0.08 1.72 6.59 -2.38 -0.02 1.71 16 29 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.44 8.10 -2.38 -0.02 1.42 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.42 3.17 8.63 -92.71 -0.80 2.37 16 34 H 0.42 6.97 8.83 -92.71 -0.82 6.15 16 35 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 37 H 0.10 4.51 4.22 -2.91 -0.01 4.50 16 38 H 0.29 15.21 8.30 -92.71 -0.77 14.44 16 39 H 0.09 4.77 6.41 -2.91 -0.02 4.75 16 40 H 0.10 0.48 8.13 -2.39 -0.02 0.46 16 41 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -83.18 349.86 0.53 -82.65 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.65 Total: 22.19 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 6.07 Total: -8.67 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -6.46 Total: -98.52 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.10 Total: -44.23 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.67 Total: 46.57 kcal Total: -83.18 0.53 -82.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414447491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.048 kcal (2) G-P(sol) polarization free energy of solvation -83.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds