Wall clock time and date at job start Tue Mar 31 2020 11:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00605 * 2 1 4 4 C 1.50697 * 109.47533 * 180.02562 * 3 2 1 5 5 C 1.35444 * 126.78118 * 89.99806 * 4 3 2 6 6 C 1.41378 * 103.98886 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.80200 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47240 * 94.68133 * 7 6 5 9 9 C 1.46897 * 111.00212 * 69.01045 * 8 7 6 10 10 C 1.50705 * 109.46763 * 60.42693 * 9 8 7 11 11 H 1.08002 * 120.00199 * 355.35782 * 10 9 8 12 12 C 1.37878 * 119.99801 * 175.35765 * 10 9 8 13 13 N 1.31515 * 120.00219 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99861 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46843 * 90.00235 * 14 12 10 16 16 H 1.48504 * 109.47221 * 209.99901 * 14 12 10 17 17 H 1.48497 * 109.47162 * 330.00442 * 14 12 10 18 18 C 1.46899 * 111.00399 * 192.96983 * 8 7 6 19 19 C 1.50699 * 109.47622 * 169.99637 * 18 8 7 20 20 C 1.38668 * 120.41626 * 89.99606 * 19 18 8 21 21 C 1.38634 * 118.42090 * 179.97438 * 20 19 18 22 22 C 1.38224 * 119.15575 * 0.25146 * 21 20 19 23 23 N 1.31850 * 120.76724 * 359.50479 * 22 21 20 24 24 C 1.31887 * 121.72607 * 0.48557 * 23 22 21 25 25 N 1.30172 * 106.39456 * 0.26032 * 6 5 4 26 26 O 1.20928 * 111.60539 * 359.53811 * 25 6 5 27 27 H 1.09006 * 109.47204 * 59.99782 * 1 2 3 28 28 H 1.08989 * 109.47463 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46810 * 300.00414 * 1 2 3 30 30 H 1.08996 * 109.47068 * 59.99256 * 3 2 1 31 31 H 1.09004 * 109.46577 * 300.00245 * 3 2 1 32 32 H 1.08006 * 128.00277 * 359.94386 * 5 4 3 33 33 H 1.09000 * 109.47666 * 334.67763 * 7 6 5 34 34 H 1.09000 * 109.47190 * 214.67606 * 7 6 5 35 35 H 1.08997 * 109.47371 * 180.42469 * 9 8 7 36 36 H 1.08995 * 109.47588 * 300.43195 * 9 8 7 37 37 H 0.97003 * 120.00062 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.46851 * 49.99430 * 18 8 7 39 39 H 1.09006 * 109.46942 * 290.00251 * 18 8 7 40 40 H 1.08001 * 120.79069 * 359.96474 * 20 19 18 41 41 H 1.07997 * 120.41964 * 179.97438 * 21 20 19 42 42 H 1.08008 * 119.61528 * 179.74459 * 22 21 20 43 43 H 1.08002 * 119.61900 * 179.75413 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3206 1.1225 -1.0858 6 6 5.6202 1.0200 -0.5386 7 6 6.9155 0.9172 -1.3019 8 7 7.5023 2.2554 -1.4532 9 6 7.9702 2.7743 -0.1611 10 6 9.0248 1.8540 0.3975 11 1 9.2647 0.9337 -0.1144 12 6 9.6834 2.1868 1.5622 13 7 9.3910 3.3071 2.1859 14 14 10.9901 1.0457 2.2551 15 1 12.3153 1.4123 1.6939 16 1 11.0261 1.1745 3.7341 17 1 10.6679 -0.3566 1.8879 18 6 8.5893 2.2450 -2.4412 19 6 9.0001 3.6614 -2.7512 20 6 9.9951 4.2818 -2.0110 21 6 10.3407 5.5854 -2.3320 22 6 9.6829 6.2206 -3.3686 23 7 8.7445 5.5979 -4.0542 24 6 8.3903 4.3581 -3.7770 25 7 5.4757 1.0259 0.7550 26 8 4.3130 1.1234 1.0728 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 4.0375 1.1442 -2.1279 33 1 6.7242 0.4909 -2.2867 34 1 7.6085 0.2762 -0.7569 35 1 8.3931 3.7691 -0.3007 36 1 7.1319 2.8299 0.5333 37 1 9.8546 3.5414 3.0051 38 1 8.2459 1.7582 -3.3541 39 1 9.4422 1.6994 -2.0373 40 1 10.4889 3.7619 -1.2034 41 1 11.1108 6.0996 -1.7764 42 1 9.9434 7.2377 -3.6223 43 1 7.6145 3.8820 -4.3582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462016324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:17 Heat of formation + Delta-G solvation = 66.757928 kcal Electronic energy + Delta-G solvation = -26259.043004 eV Core-core repulsion = 22501.477782 eV Total energy + Delta-G solvation = -3757.565223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.45339 -39.71937 -38.07802 -37.11004 -33.81971 -32.62305 -32.37786 -31.72304 -30.96112 -27.79650 -27.41845 -26.70925 -25.61944 -24.32438 -23.03264 -22.81480 -21.98878 -20.36570 -19.39154 -17.39565 -17.11934 -16.64083 -16.36421 -16.27047 -15.97602 -15.82242 -15.24335 -15.02539 -14.72884 -14.49373 -13.81424 -13.75507 -13.25867 -13.16051 -12.97206 -12.51980 -12.43445 -12.39311 -12.07889 -11.79834 -11.60187 -11.21125 -11.08786 -10.93516 -10.75249 -10.62735 -10.32066 -10.13895 -9.93824 -9.81627 -9.53333 -9.18337 -9.09130 -9.00218 -8.51625 -8.43128 -7.32291 -6.04323 -4.12615 1.57779 1.73059 1.82616 2.73503 3.24215 3.24697 3.33181 3.35392 3.95979 4.26040 4.38502 4.67277 4.70798 4.86018 4.96624 5.06301 5.13226 5.15983 5.23956 5.28205 5.28532 5.41408 5.45077 5.51573 5.53063 5.64549 5.70318 5.82606 5.87913 6.07792 6.12884 6.21308 6.37639 6.47335 6.52661 6.71635 6.82618 6.92810 7.12825 7.22547 7.51749 7.85824 7.91307 8.11468 8.23657 8.39558 8.83515 8.94794 9.53118 11.01215 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010171 B = 0.004231 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.146249 B = 6616.978216 C = 8695.526017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.150 3.850 4 C -0.064 4.064 5 C -0.191 4.191 6 C 0.037 3.963 7 C 0.132 3.868 8 N -0.533 5.533 9 C 0.182 3.818 10 C -0.545 4.545 11 H 0.055 0.945 12 C 0.071 3.929 13 N -0.885 5.885 14 Si 0.883 3.117 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.101 3.899 19 C -0.109 4.109 20 C -0.047 4.047 21 C -0.178 4.178 22 C 0.083 3.917 23 N -0.497 5.497 24 C 0.104 3.896 25 N -0.324 5.324 26 O 0.108 5.892 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.167 0.833 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.034 0.966 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.145 0.855 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 -1.701 -8.935 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.072 3.928 4 C -0.128 4.128 5 C -0.213 4.213 6 C -0.122 4.122 7 C 0.003 3.997 8 N -0.258 5.258 9 C 0.056 3.944 10 C -0.584 4.584 11 H 0.073 0.927 12 C -0.132 4.132 13 N -0.523 5.523 14 Si 0.711 3.289 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.027 4.027 19 C -0.111 4.111 20 C -0.073 4.073 21 C -0.198 4.198 22 C -0.074 4.074 23 N -0.206 5.206 24 C -0.053 4.053 25 N -0.025 5.025 26 O 0.036 5.964 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.184 0.816 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.163 0.837 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.779 -1.087 -8.604 13.834 hybrid contribution 1.276 -1.200 0.966 2.000 sum -9.503 -2.287 -7.638 12.405 Atomic orbital electron populations 1.22777 0.80371 1.03089 1.00236 1.87984 1.19996 1.26991 1.95503 1.20546 0.84236 0.85505 1.02475 1.23778 0.94472 1.07318 0.87229 1.22362 0.91726 1.06797 1.00389 1.23410 0.96844 1.02358 0.89569 1.20238 0.89648 0.92793 0.96986 1.62582 1.30419 1.20475 1.12295 1.19883 0.95030 0.95709 0.83747 1.21563 1.21263 1.06556 1.09039 0.92715 1.24873 0.96858 0.94931 0.96567 1.69944 1.41617 1.22831 1.17923 0.86740 0.82063 0.81530 0.78569 1.20721 1.21140 1.19978 1.20798 0.94888 0.91679 0.95328 1.20759 0.96278 0.97873 0.96227 1.21818 0.94638 0.94228 0.96652 1.22105 1.02127 0.96219 0.99319 1.22564 0.92745 0.99409 0.92718 1.67611 1.14226 1.10027 1.28716 1.22517 0.97346 0.90032 0.95390 1.74094 0.95360 1.16275 1.16735 1.84904 1.12005 1.66528 1.32966 0.93781 0.89361 0.93708 0.90958 0.90027 0.81553 0.90600 0.91498 0.94357 0.94780 0.92853 0.91583 0.92384 0.83745 0.85438 0.83664 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.49 10.69 -35.23 -0.38 -4.87 16 3 C 0.15 1.62 6.50 36.00 0.23 1.86 16 4 C -0.06 -0.98 7.12 -35.31 -0.25 -1.23 16 5 C -0.19 -2.97 11.06 -39.39 -0.44 -3.40 16 6 C 0.04 0.72 6.15 -82.10 -0.50 0.21 16 7 C 0.13 2.48 5.37 -4.98 -0.03 2.45 16 8 N -0.53 -10.81 4.67 -238.97 -1.12 -11.92 16 9 C 0.18 4.53 4.63 -4.98 -0.02 4.50 16 10 C -0.55 -14.28 7.34 -34.44 -0.25 -14.53 16 11 H 0.05 1.42 5.92 -52.49 -0.31 1.11 16 12 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 13 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 14 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.10 1.80 4.96 -4.98 -0.02 1.78 16 19 C -0.11 -1.95 4.89 -104.49 -0.51 -2.46 16 20 C -0.05 -0.88 8.08 -39.28 -0.32 -1.19 16 21 C -0.18 -2.90 10.11 -39.44 -0.40 -3.30 16 22 C 0.08 1.29 11.18 -17.55 -0.20 1.10 16 23 N -0.50 -8.47 10.36 -13.25 -0.14 -8.61 16 24 C 0.10 1.74 10.86 -17.55 -0.19 1.55 16 25 N -0.32 -7.02 11.18 33.42 0.37 -6.64 16 26 O 0.11 2.04 11.20 17.16 0.19 2.23 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.54 8.14 -51.94 -0.42 0.12 16 29 H 0.04 0.28 8.14 -51.92 -0.42 -0.15 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.17 2.04 8.06 -52.48 -0.42 1.62 16 33 H 0.08 1.15 7.87 -51.93 -0.41 0.74 16 34 H 0.07 1.41 6.17 -51.93 -0.32 1.09 16 35 H 0.04 1.03 5.94 -51.93 -0.31 0.72 16 36 H 0.03 0.97 6.69 -51.93 -0.35 0.62 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 39 H 0.06 1.12 6.58 -51.93 -0.34 0.77 16 40 H 0.14 2.98 7.98 -52.49 -0.42 2.56 16 41 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 43 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -32.41 363.20 -7.56 -39.97 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.80 Total: 2.56 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.88 Total: -9.49 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.14 Total: -52.05 kcal Atomic # 8 Polarization: -2.46 SS G_CDS: -0.18 Total: -2.64 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.41 -7.56 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462016324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.725 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds