Wall clock time and date at job start Tue Mar 31 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00605 * 2 1 4 4 C 1.50697 * 109.47533 * 180.02562 * 3 2 1 5 5 C 1.35444 * 126.78118 * 89.99806 * 4 3 2 6 6 C 1.41378 * 103.98886 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.80200 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47240 * 94.68133 * 7 6 5 9 9 C 1.46897 * 111.00212 * 69.01045 * 8 7 6 10 10 C 1.50705 * 109.46763 * 60.42693 * 9 8 7 11 11 H 1.08002 * 120.00199 * 355.35782 * 10 9 8 12 12 C 1.37878 * 119.99801 * 175.35765 * 10 9 8 13 13 N 1.31515 * 120.00219 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99861 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46843 * 90.00235 * 14 12 10 16 16 H 1.48504 * 109.47221 * 209.99901 * 14 12 10 17 17 H 1.48497 * 109.47162 * 330.00442 * 14 12 10 18 18 C 1.46899 * 111.00399 * 192.96983 * 8 7 6 19 19 C 1.50699 * 109.47622 * 169.99637 * 18 8 7 20 20 C 1.38668 * 120.41626 * 89.99606 * 19 18 8 21 21 C 1.38634 * 118.42090 * 179.97438 * 20 19 18 22 22 C 1.38224 * 119.15575 * 0.25146 * 21 20 19 23 23 N 1.31850 * 120.76724 * 359.50479 * 22 21 20 24 24 C 1.31887 * 121.72607 * 0.48557 * 23 22 21 25 25 N 1.30172 * 106.39456 * 0.26032 * 6 5 4 26 26 O 1.20928 * 111.60539 * 359.53811 * 25 6 5 27 27 H 1.09006 * 109.47204 * 59.99782 * 1 2 3 28 28 H 1.08989 * 109.47463 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46810 * 300.00414 * 1 2 3 30 30 H 1.08996 * 109.47068 * 59.99256 * 3 2 1 31 31 H 1.09004 * 109.46577 * 300.00245 * 3 2 1 32 32 H 1.08006 * 128.00277 * 359.94386 * 5 4 3 33 33 H 1.09000 * 109.47666 * 334.67763 * 7 6 5 34 34 H 1.09000 * 109.47190 * 214.67606 * 7 6 5 35 35 H 1.08997 * 109.47371 * 180.42469 * 9 8 7 36 36 H 1.08995 * 109.47588 * 300.43195 * 9 8 7 37 37 H 0.97003 * 120.00062 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.46851 * 49.99430 * 18 8 7 39 39 H 1.09006 * 109.46942 * 290.00251 * 18 8 7 40 40 H 1.08001 * 120.79069 * 359.96474 * 20 19 18 41 41 H 1.07997 * 120.41964 * 179.97438 * 21 20 19 42 42 H 1.08008 * 119.61528 * 179.74459 * 22 21 20 43 43 H 1.08002 * 119.61900 * 179.75413 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3206 1.1225 -1.0858 6 6 5.6202 1.0200 -0.5386 7 6 6.9155 0.9172 -1.3019 8 7 7.5023 2.2554 -1.4532 9 6 7.9702 2.7743 -0.1611 10 6 9.0248 1.8540 0.3975 11 1 9.2647 0.9337 -0.1144 12 6 9.6834 2.1868 1.5622 13 7 9.3910 3.3071 2.1859 14 14 10.9901 1.0457 2.2551 15 1 12.3153 1.4123 1.6939 16 1 11.0261 1.1745 3.7341 17 1 10.6679 -0.3566 1.8879 18 6 8.5893 2.2450 -2.4412 19 6 9.0001 3.6614 -2.7512 20 6 9.9951 4.2818 -2.0110 21 6 10.3407 5.5854 -2.3320 22 6 9.6829 6.2206 -3.3686 23 7 8.7445 5.5979 -4.0542 24 6 8.3903 4.3581 -3.7770 25 7 5.4757 1.0259 0.7550 26 8 4.3130 1.1234 1.0728 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 4.0375 1.1442 -2.1279 33 1 6.7242 0.4909 -2.2867 34 1 7.6085 0.2762 -0.7569 35 1 8.3931 3.7691 -0.3007 36 1 7.1319 2.8299 0.5333 37 1 9.8546 3.5414 3.0051 38 1 8.2459 1.7582 -3.3541 39 1 9.4422 1.6994 -2.0373 40 1 10.4889 3.7619 -1.2034 41 1 11.1108 6.0996 -1.7764 42 1 9.9434 7.2377 -3.6223 43 1 7.6145 3.8820 -4.3582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462016324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:16 Heat of formation + Delta-G solvation = 44.154333 kcal Electronic energy + Delta-G solvation = -26260.023170 eV Core-core repulsion = 22501.477782 eV Total energy + Delta-G solvation = -3758.545388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.84653 -41.05576 -38.86101 -38.70390 -35.23403 -34.59136 -33.60334 -33.08900 -32.34900 -29.40675 -28.56602 -28.12748 -26.42231 -26.09384 -24.40817 -24.23951 -23.43324 -21.84500 -20.84916 -18.73650 -18.62453 -18.21676 -17.80545 -17.23250 -17.14337 -16.78582 -16.69028 -16.42640 -16.23662 -15.99735 -15.46979 -14.95569 -14.61018 -14.47716 -14.19886 -13.96690 -13.85240 -13.57795 -13.34040 -13.06950 -12.87571 -12.84788 -12.75166 -12.37759 -12.32389 -12.19676 -12.01870 -11.87759 -11.75302 -10.99217 -10.67519 -10.64306 -10.52139 -10.38923 -10.33710 -9.83025 -9.06480 -8.13792 -6.29444 0.27979 0.44959 0.52995 1.30697 1.33940 1.36769 1.41807 2.18998 2.35331 2.92127 3.09995 3.13515 3.36363 3.61062 3.64943 3.70117 3.99629 4.12144 4.12350 4.17521 4.23118 4.26781 4.35259 4.45855 4.54114 4.59528 4.61467 4.69400 4.79135 4.81803 4.88723 4.93913 4.95766 5.04435 5.19232 5.27392 5.36274 5.39658 5.56099 5.77795 5.89434 6.01704 6.14363 6.19831 6.42073 6.88225 7.10244 7.39619 7.50528 8.89518 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010171 B = 0.004231 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.146249 B = 6616.978216 C = 8695.526017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.151 3.849 4 C -0.060 4.060 5 C -0.187 4.187 6 C 0.018 3.982 7 C 0.134 3.866 8 N -0.528 5.528 9 C 0.205 3.795 10 C -0.537 4.537 11 H 0.055 0.945 12 C 0.020 3.980 13 N -0.923 5.923 14 Si 0.942 3.058 15 H -0.269 1.269 16 H -0.288 1.288 17 H -0.273 1.273 18 C 0.104 3.896 19 C -0.123 4.123 20 C -0.070 4.070 21 C -0.182 4.182 22 C 0.087 3.913 23 N -0.507 5.507 24 C 0.107 3.893 25 N -0.381 5.381 26 O 0.089 5.911 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.205 0.795 33 H 0.121 0.879 34 H 0.037 0.963 35 H 0.014 0.986 36 H -0.005 1.005 37 H 0.261 0.739 38 H 0.107 0.893 39 H 0.037 0.963 40 H 0.113 0.887 41 H 0.145 0.855 42 H 0.182 0.818 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.395 -1.732 -11.424 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.074 3.926 4 C -0.123 4.123 5 C -0.208 4.208 6 C -0.141 4.141 7 C 0.005 3.995 8 N -0.252 5.252 9 C 0.078 3.922 10 C -0.577 4.577 11 H 0.073 0.927 12 C -0.180 4.180 13 N -0.563 5.563 14 Si 0.768 3.232 15 H -0.194 1.194 16 H -0.214 1.214 17 H -0.197 1.197 18 C -0.024 4.024 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.201 4.201 22 C -0.069 4.069 23 N -0.216 5.216 24 C -0.050 4.050 25 N -0.084 5.084 26 O 0.020 5.980 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.133 0.867 32 H 0.222 0.778 33 H 0.139 0.861 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.013 0.987 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.056 0.944 40 H 0.131 0.869 41 H 0.163 0.837 42 H 0.199 0.801 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.178 -1.134 -11.111 16.524 hybrid contribution 1.601 -1.175 1.686 2.605 sum -10.577 -2.309 -9.425 14.354 Atomic orbital electron populations 1.23007 0.78103 1.04190 1.01697 1.87927 1.22424 1.27293 1.95821 1.20792 0.81194 0.85829 1.04743 1.24692 0.96398 1.05129 0.86130 1.22734 0.89734 1.06203 1.02148 1.23756 0.98439 1.02490 0.89385 1.20343 0.88948 0.91327 0.98850 1.62477 1.30984 1.21529 1.10246 1.19367 0.92871 0.94568 0.85346 1.21777 1.20851 1.06353 1.08669 0.92719 1.25612 0.98989 0.96218 0.97165 1.70070 1.43111 1.24622 1.18451 0.85801 0.80155 0.79663 0.77558 1.19423 1.21410 1.19749 1.20880 0.93493 0.92098 0.95913 1.20807 0.96621 0.98102 0.96976 1.21730 0.95769 0.95549 0.96636 1.22330 1.02647 0.95358 0.99791 1.23117 0.91585 1.00648 0.91591 1.67710 1.14672 1.10173 1.29062 1.22868 0.97333 0.89934 0.94832 1.74086 0.96953 1.18797 1.18583 1.84824 1.11801 1.66885 1.34536 0.91818 0.88554 0.92705 0.89714 0.86658 0.77837 0.86130 0.94497 0.96814 0.98662 0.93034 0.87453 0.94436 0.86935 0.83691 0.80107 0.80786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.77 10.69 -148.98 -1.59 -10.36 16 3 C 0.15 2.92 6.50 71.24 0.46 3.38 16 4 C -0.06 -1.77 7.12 25.04 0.18 -1.59 16 5 C -0.19 -5.48 11.06 22.40 0.25 -5.23 16 6 C 0.02 0.69 6.15 43.58 0.27 0.95 16 7 C 0.13 4.96 5.37 85.56 0.46 5.42 16 8 N -0.53 -21.45 4.67 -909.96 -4.25 -25.70 16 9 C 0.21 10.67 4.63 85.56 0.40 11.06 16 10 C -0.54 -29.27 7.34 25.60 0.19 -29.08 16 11 H 0.05 2.93 5.92 -2.91 -0.02 2.91 16 12 C 0.02 1.11 5.46 84.65 0.46 1.57 16 13 N -0.92 -55.69 13.29 21.45 0.28 -55.41 16 14 Si 0.94 44.80 29.54 68.60 2.03 46.83 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 18 C 0.10 3.62 4.96 85.56 0.42 4.05 16 19 C -0.12 -4.33 4.89 -19.78 -0.10 -4.42 16 20 C -0.07 -2.68 8.08 22.47 0.18 -2.49 16 21 C -0.18 -5.83 10.11 22.36 0.23 -5.61 16 22 C 0.09 2.54 11.18 84.69 0.95 3.49 16 23 N -0.51 -16.11 10.36 -195.84 -2.03 -18.14 16 24 C 0.11 3.35 10.86 84.67 0.92 4.27 16 25 N -0.38 -17.15 11.18 -49.55 -0.55 -17.71 16 26 O 0.09 3.46 11.20 71.59 0.80 4.26 16 27 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.20 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.12 3.33 7.87 -2.39 -0.02 3.31 16 34 H 0.04 1.59 6.17 -2.39 -0.01 1.57 16 35 H 0.01 0.78 5.94 -2.39 -0.01 0.77 16 36 H 0.00 -0.28 6.69 -2.39 -0.02 -0.30 16 37 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 38 H 0.11 2.83 7.85 -2.39 -0.02 2.81 16 39 H 0.04 1.46 6.58 -2.38 -0.02 1.45 16 40 H 0.11 4.96 7.98 -2.91 -0.02 4.94 16 41 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 42 H 0.18 3.86 8.06 -2.91 -0.02 3.84 16 43 H 0.18 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -74.82 363.20 2.22 -72.60 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.02 Total: 16.31 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 6.51 Total: -12.68 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -6.55 Total: -116.96 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.79 Total: -6.10 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.82 2.22 -72.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462016324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.753 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds