Wall clock time and date at job start Tue Mar 31 2020 11:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99899 * 2 1 4 4 C 1.50704 * 109.47127 * 89.99550 * 3 2 1 5 5 H 1.08003 * 119.99695 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00110 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99703 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99755 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.46803 * 90.00020 * 8 6 4 10 10 H 1.48501 * 109.47036 * 209.99563 * 8 6 4 11 11 H 1.48494 * 109.47376 * 329.99804 * 8 6 4 12 12 C 1.34768 * 120.00338 * 179.97438 * 2 1 3 13 13 O 1.21510 * 120.00515 * 185.20350 * 12 2 1 14 14 C 1.48232 * 119.99776 * 5.19972 * 12 2 1 15 15 C 1.39624 * 119.65583 * 231.30954 * 14 12 2 16 16 C 1.38545 * 119.24738 * 179.77120 * 15 14 12 17 17 C 1.38578 * 118.55182 * 0.50102 * 16 15 14 18 18 C 1.39595 * 119.24724 * 359.74782 * 17 16 15 19 19 C 1.48225 * 119.65165 * 179.97438 * 18 17 16 20 20 O 1.21507 * 120.00381 * 1.09907 * 19 18 17 21 21 N 1.34776 * 119.99847 * 181.09385 * 19 18 17 22 22 C 1.47028 * 125.64815 * 4.34183 * 21 19 18 23 23 C 1.54312 * 107.27515 * 180.96409 * 22 21 19 24 24 C 1.55158 * 102.86522 * 22.52761 * 23 22 21 25 25 C 1.47426 * 125.65013 * 184.64646 * 21 19 18 26 26 N 1.32342 * 119.65309 * 51.59251 * 14 12 2 27 27 H 1.09008 * 109.46975 * 62.34409 * 1 2 3 28 28 H 1.09002 * 109.47089 * 182.34099 * 1 2 3 29 29 H 1.09002 * 109.47354 * 302.34647 * 1 2 3 30 30 H 1.08998 * 109.47593 * 210.00083 * 3 2 1 31 31 H 1.09000 * 109.46961 * 329.99913 * 3 2 1 32 32 H 0.97008 * 119.99650 * 179.97438 * 7 6 4 33 33 H 1.08002 * 120.37528 * 0.02562 * 15 14 12 34 34 H 1.07995 * 120.72321 * 180.22198 * 16 15 14 35 35 H 1.08006 * 120.38192 * 179.72634 * 17 16 15 36 36 H 1.08998 * 109.88263 * 300.50913 * 22 21 19 37 37 H 1.08998 * 109.88049 * 61.67683 * 22 21 19 38 38 H 1.09004 * 110.92520 * 264.10985 * 23 22 21 39 39 H 1.09005 * 110.58999 * 140.78737 * 23 22 21 40 40 H 1.08999 * 110.99963 * 206.23182 * 24 23 22 41 41 H 1.08998 * 111.00633 * 82.37341 * 24 23 22 42 42 H 1.09007 * 110.36179 * 274.67428 * 25 21 19 43 43 H 1.08997 * 110.36525 * 36.88844 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0979 1.0958 2.2417 6 6 3.1268 2.8776 1.6728 7 7 3.3454 3.2574 2.9127 8 14 3.7338 3.9288 0.2529 9 1 2.6823 4.9078 -0.1230 10 1 4.9619 4.6551 0.6645 11 1 4.0396 3.0593 -0.9113 12 6 2.1389 -1.1671 0.0005 13 8 3.3503 -1.1692 0.0960 14 6 1.4024 -2.4482 -0.1152 15 6 1.6403 -3.4678 0.8085 16 6 0.9436 -4.6600 0.6952 17 6 0.0379 -4.8017 -0.3440 18 6 -0.1478 -3.7440 -1.2359 19 6 -1.1140 -3.8860 -2.3509 20 8 -1.7540 -4.9115 -2.4734 21 7 -1.2826 -2.8775 -3.2290 22 6 -0.5138 -1.6245 -3.2527 23 6 -1.0701 -0.7674 -4.4091 24 6 -2.4985 -1.3399 -4.6074 25 6 -2.2726 -2.8455 -4.3210 26 7 0.5302 -2.6157 -1.0965 27 1 -0.3633 0.4770 -0.9103 28 1 -0.3633 -1.0268 0.0420 29 1 -0.3634 0.5498 0.8682 30 1 3.1499 1.1385 -0.5138 31 1 1.6084 2.0284 -0.5138 32 1 3.8229 4.0831 3.0900 33 1 2.3562 -3.3272 1.6048 34 1 1.1063 -5.4631 1.3987 35 1 -0.5179 -5.7201 -0.4628 36 1 -0.6351 -1.0972 -2.3065 37 1 0.5404 -1.8396 -3.4272 38 1 -0.4736 -0.8977 -5.3121 39 1 -1.1122 0.2832 -4.1218 40 1 -2.8434 -1.1842 -5.6296 41 1 -3.1961 -0.9064 -3.8909 42 1 -1.8777 -3.3449 -5.2058 43 1 -3.2028 -3.3167 -4.0036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464505987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:31 Heat of formation + Delta-G solvation = -8.531812 kcal Electronic energy + Delta-G solvation = -26937.864380 eV Core-core repulsion = 23177.034349 eV Total energy + Delta-G solvation = -3760.830031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04938 -39.72068 -38.47154 -37.43657 -35.10487 -33.15254 -32.63645 -31.93649 -31.25031 -29.17391 -28.54755 -26.22034 -25.39000 -24.54695 -23.11907 -22.27236 -21.38534 -20.28832 -18.95496 -17.75986 -17.23613 -16.98745 -16.65133 -16.26056 -15.88683 -15.69387 -15.46234 -14.78775 -14.49179 -14.13555 -13.80426 -13.60171 -13.56475 -13.32450 -13.18954 -12.98222 -12.64435 -12.41995 -12.33283 -12.17643 -11.96213 -11.65884 -11.52960 -11.43552 -10.99548 -10.94581 -10.60999 -10.58238 -10.15861 -10.09474 -9.81478 -9.60176 -9.40422 -9.18418 -8.77159 -8.63185 -7.82811 -6.12520 -4.11886 0.44607 0.87731 2.48799 2.68703 3.07863 3.24083 3.31820 3.36086 3.47249 3.66405 4.01183 4.33393 4.36182 4.43490 4.59064 4.67588 4.70396 4.80165 4.85931 5.11471 5.13628 5.19435 5.25781 5.34642 5.44641 5.52886 5.55610 5.64866 5.73614 5.78950 5.83505 5.88880 5.90230 5.98251 6.11818 6.23011 6.32075 6.58061 6.87130 7.17463 7.23794 7.42655 7.54764 7.92892 8.05345 8.39481 8.71674 8.90620 9.46880 11.00779 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.004180 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.469688 B = 6696.726685 C = 8189.076308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.576 5.576 3 C 0.217 3.783 4 C -0.530 4.530 5 H 0.075 0.925 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.263 1.263 12 C 0.563 3.437 13 O -0.522 6.522 14 C 0.101 3.899 15 C -0.101 4.101 16 C -0.082 4.082 17 C -0.102 4.102 18 C 0.074 3.926 19 C 0.590 3.410 20 O -0.538 6.538 21 N -0.601 5.601 22 C 0.109 3.891 23 C -0.138 4.138 24 C -0.133 4.133 25 C 0.105 3.895 26 N -0.427 5.427 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 -12.334 -12.407 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.306 5.306 3 C 0.097 3.903 4 C -0.569 4.569 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.347 3.653 13 O -0.398 6.398 14 C -0.040 4.040 15 C -0.121 4.121 16 C -0.108 4.108 17 C -0.123 4.123 18 C -0.066 4.066 19 C 0.377 3.623 20 O -0.415 6.415 21 N -0.333 5.333 22 C -0.013 4.013 23 C -0.176 4.176 24 C -0.171 4.171 25 C -0.017 4.017 26 N -0.142 5.142 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.448 -12.059 -12.874 21.029 hybrid contribution 0.505 0.036 0.093 0.515 sum -10.943 -12.023 -12.781 20.680 Atomic orbital electron populations 1.21775 0.80483 1.01861 1.01769 1.47686 1.06585 1.06536 1.69777 1.19736 0.92403 0.79511 0.98667 1.21285 1.37204 1.07292 0.91100 0.90683 1.24843 0.95164 0.97302 0.95586 1.69892 1.41330 1.23521 1.18678 0.86875 0.78971 0.80846 0.83239 1.20034 1.20887 1.18784 1.17750 0.86755 0.82408 0.78410 1.90810 1.12967 1.86151 1.49825 1.21498 0.94114 0.96153 0.92229 1.22372 0.98326 0.92552 0.98882 1.21617 0.94365 0.97505 0.97317 1.22196 0.97148 0.99523 0.93458 1.20989 0.97687 0.91173 0.96788 1.17479 0.81808 0.82309 0.80674 1.90775 1.48295 1.27997 1.74473 1.48294 1.36574 1.18246 1.30211 1.22276 0.95616 0.83648 0.99784 1.22756 0.95948 1.00214 0.98693 1.22796 0.97506 0.94226 1.02614 1.22282 0.92546 0.97214 0.89672 1.67884 1.04184 1.22337 1.19802 0.92545 0.91667 0.91667 0.93969 0.95189 0.92499 0.83203 0.83324 0.83248 0.89349 0.90868 0.90671 0.89642 0.89773 0.90397 0.91281 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 9.47 59.85 0.57 1.91 16 2 N -0.58 -11.63 2.86 -183.92 -0.53 -12.16 16 3 C 0.22 5.12 4.23 -5.19 -0.02 5.10 16 4 C -0.53 -14.84 9.94 -34.44 -0.34 -15.19 16 5 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 8 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.26 -6.11 6.54 56.52 0.37 -5.75 16 12 C 0.56 11.44 7.32 -12.16 -0.09 11.35 16 13 O -0.52 -12.62 16.68 5.36 0.09 -12.53 16 14 C 0.10 1.63 5.32 -83.02 -0.44 1.18 16 15 C -0.10 -1.35 9.78 -38.95 -0.38 -1.73 16 16 C -0.08 -0.85 10.16 -39.34 -0.40 -1.25 16 17 C -0.10 -1.17 9.63 -38.95 -0.38 -1.54 16 18 C 0.07 0.99 6.72 -83.03 -0.56 0.43 16 19 C 0.59 8.12 7.84 -12.16 -0.10 8.03 16 20 O -0.54 -8.42 16.61 5.36 0.09 -8.33 16 21 N -0.60 -7.11 3.33 -171.49 -0.57 -7.68 16 22 C 0.11 1.21 5.42 -3.07 -0.02 1.19 16 23 C -0.14 -1.13 6.95 -24.90 -0.17 -1.30 16 24 C -0.13 -0.94 7.08 -24.58 -0.17 -1.12 16 25 C 0.10 0.97 6.89 -2.53 -0.02 0.95 16 26 N -0.43 -6.19 5.02 -6.37 -0.03 -6.22 16 27 H 0.06 0.76 7.40 -51.92 -0.38 0.38 16 28 H 0.06 0.95 5.26 -51.93 -0.27 0.67 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.04 1.07 6.56 -51.93 -0.34 0.73 16 31 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.15 1.48 7.64 -52.48 -0.40 1.08 16 36 H 0.09 1.06 5.42 -51.93 -0.28 0.78 16 37 H 0.07 0.91 7.80 -51.93 -0.40 0.50 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -34.48 355.88 -7.96 -42.44 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.87 Total: -0.82 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -2.62 Total: 10.02 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.35 Total: -52.40 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.18 Total: -20.86 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.48 -7.96 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464505987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.910 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds