Wall clock time and date at job start Tue Mar 31 2020 11:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99899 * 2 1 4 4 C 1.50704 * 109.47127 * 89.99550 * 3 2 1 5 5 H 1.08003 * 119.99695 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00110 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99703 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99755 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.46803 * 90.00020 * 8 6 4 10 10 H 1.48501 * 109.47036 * 209.99563 * 8 6 4 11 11 H 1.48494 * 109.47376 * 329.99804 * 8 6 4 12 12 C 1.34768 * 120.00338 * 179.97438 * 2 1 3 13 13 O 1.21510 * 120.00515 * 185.20350 * 12 2 1 14 14 C 1.48232 * 119.99776 * 5.19972 * 12 2 1 15 15 C 1.39624 * 119.65583 * 231.30954 * 14 12 2 16 16 C 1.38545 * 119.24738 * 179.77120 * 15 14 12 17 17 C 1.38578 * 118.55182 * 0.50102 * 16 15 14 18 18 C 1.39595 * 119.24724 * 359.74782 * 17 16 15 19 19 C 1.48225 * 119.65165 * 179.97438 * 18 17 16 20 20 O 1.21507 * 120.00381 * 1.09907 * 19 18 17 21 21 N 1.34776 * 119.99847 * 181.09385 * 19 18 17 22 22 C 1.47028 * 125.64815 * 4.34183 * 21 19 18 23 23 C 1.54312 * 107.27515 * 180.96409 * 22 21 19 24 24 C 1.55158 * 102.86522 * 22.52761 * 23 22 21 25 25 C 1.47426 * 125.65013 * 184.64646 * 21 19 18 26 26 N 1.32342 * 119.65309 * 51.59251 * 14 12 2 27 27 H 1.09008 * 109.46975 * 62.34409 * 1 2 3 28 28 H 1.09002 * 109.47089 * 182.34099 * 1 2 3 29 29 H 1.09002 * 109.47354 * 302.34647 * 1 2 3 30 30 H 1.08998 * 109.47593 * 210.00083 * 3 2 1 31 31 H 1.09000 * 109.46961 * 329.99913 * 3 2 1 32 32 H 0.97008 * 119.99650 * 179.97438 * 7 6 4 33 33 H 1.08002 * 120.37528 * 0.02562 * 15 14 12 34 34 H 1.07995 * 120.72321 * 180.22198 * 16 15 14 35 35 H 1.08006 * 120.38192 * 179.72634 * 17 16 15 36 36 H 1.08998 * 109.88263 * 300.50913 * 22 21 19 37 37 H 1.08998 * 109.88049 * 61.67683 * 22 21 19 38 38 H 1.09004 * 110.92520 * 264.10985 * 23 22 21 39 39 H 1.09005 * 110.58999 * 140.78737 * 23 22 21 40 40 H 1.08999 * 110.99963 * 206.23182 * 24 23 22 41 41 H 1.08998 * 111.00633 * 82.37341 * 24 23 22 42 42 H 1.09007 * 110.36179 * 274.67428 * 25 21 19 43 43 H 1.08997 * 110.36525 * 36.88844 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0979 1.0958 2.2417 6 6 3.1268 2.8776 1.6728 7 7 3.3454 3.2574 2.9127 8 14 3.7338 3.9288 0.2529 9 1 2.6823 4.9078 -0.1230 10 1 4.9619 4.6551 0.6645 11 1 4.0396 3.0593 -0.9113 12 6 2.1389 -1.1671 0.0005 13 8 3.3503 -1.1692 0.0960 14 6 1.4024 -2.4482 -0.1152 15 6 1.6403 -3.4678 0.8085 16 6 0.9436 -4.6600 0.6952 17 6 0.0379 -4.8017 -0.3440 18 6 -0.1478 -3.7440 -1.2359 19 6 -1.1140 -3.8860 -2.3509 20 8 -1.7540 -4.9115 -2.4734 21 7 -1.2826 -2.8775 -3.2290 22 6 -0.5138 -1.6245 -3.2527 23 6 -1.0701 -0.7674 -4.4091 24 6 -2.4985 -1.3399 -4.6074 25 6 -2.2726 -2.8455 -4.3210 26 7 0.5302 -2.6157 -1.0965 27 1 -0.3633 0.4770 -0.9103 28 1 -0.3633 -1.0268 0.0420 29 1 -0.3634 0.5498 0.8682 30 1 3.1499 1.1385 -0.5138 31 1 1.6084 2.0284 -0.5138 32 1 3.8229 4.0831 3.0900 33 1 2.3562 -3.3272 1.6048 34 1 1.1063 -5.4631 1.3987 35 1 -0.5179 -5.7201 -0.4628 36 1 -0.6351 -1.0972 -2.3065 37 1 0.5404 -1.8396 -3.4272 38 1 -0.4736 -0.8977 -5.3121 39 1 -1.1122 0.2832 -4.1218 40 1 -2.8434 -1.1842 -5.6296 41 1 -3.1961 -0.9064 -3.8909 42 1 -1.8777 -3.3449 -5.2058 43 1 -3.2028 -3.3167 -4.0036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464505987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:30 Heat of formation + Delta-G solvation = -31.665834 kcal Electronic energy + Delta-G solvation = -26938.867546 eV Core-core repulsion = 23177.034349 eV Total energy + Delta-G solvation = -3761.833197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14871 -40.89226 -39.78904 -38.38420 -36.79939 -34.75332 -34.06110 -33.09531 -32.17662 -30.47410 -29.87935 -27.65465 -26.36859 -26.01041 -24.14486 -23.77849 -22.14616 -21.35833 -20.29855 -19.14546 -18.71576 -18.57239 -17.52735 -17.46516 -17.18606 -16.86457 -16.70594 -16.21780 -15.83701 -15.58790 -15.01950 -14.74875 -14.54756 -14.42801 -14.31030 -14.16175 -13.88919 -13.86471 -13.67528 -13.38280 -13.23891 -13.09870 -12.87613 -12.40728 -12.27413 -12.12044 -12.03279 -11.77805 -11.72624 -11.55399 -11.13103 -11.05023 -10.80363 -10.60414 -10.40833 -9.70619 -9.52583 -8.32254 -6.38050 -0.60233 -0.14992 1.35183 1.36749 1.40053 1.50123 1.64772 1.81579 2.01855 2.33576 2.59230 2.88645 3.02056 3.29646 3.63296 3.72060 3.77995 3.83271 3.88298 4.09353 4.17180 4.27277 4.34958 4.37350 4.51481 4.59970 4.70819 4.71739 4.83657 4.85361 4.90274 4.95466 4.96764 5.01678 5.04507 5.15012 5.25934 5.33217 5.41714 5.43692 5.51046 6.20421 6.25990 6.35668 6.48146 6.62973 6.91553 7.09000 7.27618 8.84700 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.004180 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.469688 B = 6696.726685 C = 8189.076308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.582 5.582 3 C 0.225 3.775 4 C -0.538 4.538 5 H 0.028 0.972 6 C 0.013 3.987 7 N -0.945 5.945 8 Si 0.947 3.053 9 H -0.250 1.250 10 H -0.283 1.283 11 H -0.252 1.252 12 C 0.559 3.441 13 O -0.574 6.574 14 C 0.079 3.921 15 C -0.106 4.106 16 C -0.059 4.059 17 C -0.091 4.091 18 C 0.061 3.939 19 C 0.584 3.416 20 O -0.563 6.563 21 N -0.600 5.600 22 C 0.107 3.893 23 C -0.133 4.133 24 C -0.121 4.121 25 C 0.097 3.903 26 N -0.427 5.427 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.057 0.943 32 H 0.269 0.731 33 H 0.149 0.851 34 H 0.194 0.806 35 H 0.171 0.829 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -12.806 -14.592 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.311 5.311 3 C 0.103 3.897 4 C -0.576 4.576 5 H 0.047 0.953 6 C -0.185 4.185 7 N -0.585 5.585 8 Si 0.769 3.231 9 H -0.174 1.174 10 H -0.209 1.209 11 H -0.176 1.176 12 C 0.345 3.655 13 O -0.453 6.453 14 C -0.061 4.061 15 C -0.127 4.127 16 C -0.084 4.084 17 C -0.112 4.112 18 C -0.080 4.080 19 C 0.372 3.628 20 O -0.442 6.442 21 N -0.332 5.332 22 C -0.015 4.015 23 C -0.171 4.171 24 C -0.159 4.159 25 C -0.024 4.024 26 N -0.142 5.142 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.167 0.833 34 H 0.211 0.789 35 H 0.188 0.812 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.024 -12.524 -15.082 23.536 hybrid contribution 0.919 0.062 0.830 1.239 sum -12.105 -12.462 -14.252 22.471 Atomic orbital electron populations 1.21936 0.77831 1.03021 1.02755 1.47748 1.08247 1.05659 1.69463 1.19445 0.92761 0.81701 0.95746 1.21498 1.37070 1.06880 0.92195 0.95336 1.25838 0.95163 0.98862 0.98644 1.70051 1.42617 1.24455 1.21366 0.85723 0.78803 0.79082 0.79455 1.17393 1.20899 1.17592 1.18378 0.86451 0.83736 0.76889 1.90759 1.15282 1.87186 1.52049 1.20892 0.95837 0.94918 0.94480 1.22496 0.98763 0.93085 0.98377 1.22014 0.92237 0.97001 0.97152 1.22519 0.96608 0.99469 0.92572 1.21192 0.97771 0.91518 0.97497 1.17566 0.81728 0.82469 0.81055 1.90755 1.49329 1.28890 1.75244 1.48458 1.36693 1.17884 1.30116 1.22288 0.94826 0.83709 1.00674 1.22760 0.96540 1.00076 0.97719 1.22788 0.96803 0.92132 1.04185 1.22512 0.91806 0.99049 0.89028 1.67747 1.04003 1.23189 1.19256 0.89685 0.90333 0.92529 0.95635 0.92468 0.92241 0.83307 0.78908 0.81199 0.90309 0.92661 0.89827 0.88682 0.87276 0.90144 0.90578 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.70 9.47 127.77 1.21 3.91 16 2 N -0.58 -23.90 2.86 -854.11 -2.44 -26.34 16 3 C 0.23 10.71 4.23 85.63 0.36 11.08 16 4 C -0.54 -31.15 9.94 25.60 0.25 -30.90 16 5 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 6 C 0.01 0.76 5.47 84.66 0.46 1.22 16 7 N -0.94 -58.95 13.96 21.45 0.30 -58.65 16 8 Si 0.95 43.11 27.47 68.60 1.88 44.99 16 9 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 12 C 0.56 23.44 7.32 86.90 0.64 24.08 16 13 O -0.57 -29.03 16.68 -3.75 -0.06 -29.10 16 14 C 0.08 2.55 5.32 42.06 0.22 2.77 16 15 C -0.11 -2.77 9.78 22.68 0.22 -2.55 16 16 C -0.06 -1.05 10.16 22.42 0.23 -0.83 16 17 C -0.09 -1.84 9.63 22.68 0.22 -1.63 16 18 C 0.06 1.55 6.72 42.05 0.28 1.84 16 19 C 0.58 15.43 7.84 86.90 0.68 16.11 16 20 O -0.56 -16.91 16.61 -3.74 -0.06 -16.98 16 21 N -0.60 -13.43 3.33 -814.76 -2.71 -16.14 16 22 C 0.11 2.24 5.42 86.72 0.47 2.71 16 23 C -0.13 -1.84 6.95 31.78 0.22 -1.62 16 24 C -0.12 -1.36 7.08 31.99 0.23 -1.13 16 25 C 0.10 1.60 6.89 86.86 0.60 2.20 16 26 N -0.43 -12.14 5.02 -174.08 -0.87 -13.02 16 27 H 0.08 2.15 7.40 -2.38 -0.02 2.13 16 28 H 0.08 2.24 5.26 -2.39 -0.01 2.23 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.03 1.31 6.56 -2.39 -0.02 1.29 16 31 H 0.06 2.41 7.50 -2.39 -0.02 2.40 16 32 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 33 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 34 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.17 2.81 7.64 -2.91 -0.02 2.79 16 36 H 0.08 1.79 5.42 -2.39 -0.01 1.78 16 37 H 0.05 1.35 7.80 -2.39 -0.02 1.33 16 38 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 Total: -1.00 -79.16 355.88 3.30 -75.86 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.97 Total: 12.08 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 6.30 Total: 27.28 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -5.73 Total: -114.14 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -0.12 Total: -46.07 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 44.99 kcal Total: -79.16 3.30 -75.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464505987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.195 kcal (2) G-P(sol) polarization free energy of solvation -79.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds