Wall clock time and date at job start Tue Mar 31 2020 11:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00097 * 2 1 4 4 C 1.53006 * 109.47177 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46768 * 65.00195 * 4 3 2 6 6 C 1.46496 * 120.00116 * 269.99752 * 5 4 3 7 7 C 1.52996 * 109.47189 * 270.00452 * 6 5 4 8 8 C 1.47201 * 109.47345 * 180.02562 * 7 6 5 9 9 N 5.92362 * 136.88566 * 195.72096 * 2 1 3 10 10 C 1.34775 * 119.99782 * 90.00333 * 5 4 3 11 11 O 1.21590 * 120.00404 * 359.97438 * 10 5 4 12 12 N 1.34781 * 120.00129 * 179.97438 * 10 5 4 13 13 C 1.39952 * 120.00032 * 174.30438 * 12 10 5 14 14 C 1.39283 * 119.94762 * 145.34775 * 13 12 10 15 15 C 1.38486 * 120.43399 * 179.97438 * 14 13 12 16 16 C 1.37689 * 120.31817 * 0.29198 * 15 14 13 17 17 C 1.40736 * 119.87952 * 359.43609 * 16 15 14 18 18 C 1.41418 * 120.20971 * 180.31383 * 17 16 15 19 19 H 1.07996 * 119.99948 * 214.57395 * 18 17 16 20 20 C 1.39932 * 119.99651 * 34.56653 * 18 17 16 21 21 N 1.30829 * 120.00222 * 5.44706 * 20 18 17 22 22 Si 1.86801 * 119.99927 * 185.44240 * 20 18 17 23 23 H 1.48500 * 109.47173 * 60.00204 * 22 20 18 24 24 H 1.48498 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47076 * 300.00303 * 22 20 18 26 26 C 1.38237 * 119.94668 * 325.31721 * 13 12 10 27 27 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46837 * 299.99586 * 1 2 3 29 29 H 1.08996 * 109.46879 * 59.99570 * 1 2 3 30 30 H 1.09005 * 109.47122 * 60.00446 * 3 2 1 31 31 H 1.09000 * 109.47569 * 300.00711 * 3 2 1 32 32 H 1.08997 * 109.46804 * 305.00145 * 4 3 2 33 33 H 1.08999 * 109.47045 * 185.00422 * 4 3 2 34 34 H 1.08996 * 109.47181 * 30.00581 * 6 5 4 35 35 H 1.09001 * 109.47021 * 150.00362 * 6 5 4 36 36 H 1.09004 * 109.47069 * 299.99811 * 7 6 5 37 37 H 1.08993 * 109.47417 * 59.99804 * 7 6 5 38 38 H 0.96998 * 119.99501 * 354.30374 * 12 10 5 39 39 H 1.08004 * 119.78310 * 359.97438 * 14 13 12 40 40 H 1.08003 * 119.84208 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.05234 * 179.70842 * 16 15 14 42 42 H 0.96998 * 120.00326 * 179.97438 * 21 20 18 43 43 H 1.07991 * 120.16169 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3404 7 6 5.5230 -1.3044 -0.9352 8 6 5.6534 -2.7678 -1.0257 9 7 5.7532 -3.8971 -1.0970 10 6 4.2634 1.3329 -2.3199 11 8 4.1555 2.5417 -2.2459 12 7 4.6697 0.7620 -3.4713 13 6 4.8527 1.5472 -4.6152 14 6 5.8683 1.2369 -5.5164 15 6 6.0580 2.0067 -6.6519 16 6 5.2474 3.0919 -6.8993 17 6 4.2134 3.4140 -6.0006 18 6 3.3725 4.5230 -6.2513 19 1 2.9958 5.1120 -5.4282 20 6 3.0288 4.8573 -7.5659 21 7 3.3963 4.0838 -8.5550 22 14 2.0450 6.4079 -7.9086 23 1 2.8006 7.5907 -7.4236 24 1 1.8124 6.5337 -9.3699 25 1 0.7396 6.3316 -7.2047 26 6 4.0246 2.6291 -4.8493 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5684 0.8427 33 1 3.9785 2.1764 0.0903 34 1 3.3858 -1.3632 -0.6715 35 1 3.9139 -1.2122 -2.3645 36 1 6.2435 -0.8337 -1.6042 37 1 5.7154 -0.9847 0.0889 38 1 4.8354 -0.1931 -3.5069 39 1 6.5122 0.3904 -5.3284 40 1 6.8483 1.7573 -7.3445 41 1 5.4022 3.6920 -7.7838 42 1 3.1577 4.3153 -9.4663 43 1 3.2362 2.8699 -4.1517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466577616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:32 Heat of formation + Delta-G solvation = -18.083774 kcal Electronic energy + Delta-G solvation = -26122.357129 eV Core-core repulsion = 22361.112894 eV Total energy + Delta-G solvation = -3761.244235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41043 -38.18218 -37.44079 -37.03648 -35.57573 -34.51797 -33.02280 -31.92735 -29.77359 -29.75332 -27.80437 -26.41324 -25.24303 -24.43997 -23.32128 -21.18901 -20.78894 -19.26835 -18.32580 -18.00080 -17.33552 -16.46642 -16.33102 -15.83725 -15.50627 -15.33056 -14.97490 -14.71670 -14.61535 -14.33194 -14.20810 -13.68086 -13.17023 -12.98433 -12.92231 -12.84296 -12.43931 -12.29685 -12.12429 -12.00135 -11.96806 -11.63981 -11.42291 -11.22996 -11.15562 -11.08163 -10.92349 -10.45529 -10.19474 -9.83496 -9.66596 -9.43564 -9.20584 -8.97087 -8.75346 -7.34470 -6.87295 -6.58296 -4.32600 2.40225 2.54866 2.65589 2.82770 2.95223 3.12386 3.16352 3.22888 3.57106 3.65976 3.77471 4.02541 4.20075 4.61877 4.66611 4.74896 4.97074 5.00947 5.07481 5.11923 5.24194 5.28029 5.32385 5.48154 5.54824 5.67428 5.70365 5.74096 6.22543 6.37213 6.37926 6.73897 6.77377 6.98702 7.04942 7.11808 7.23619 7.30679 7.33551 7.68074 7.78085 7.98431 8.15098 8.24775 8.36532 8.70316 8.89279 9.00921 9.02525 10.35606 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.003576 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.265065 B = 7828.649489 C = 9405.534300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.040 3.960 4 C 0.138 3.862 5 N -0.625 5.625 6 C 0.118 3.882 7 C -0.051 4.051 8 C 0.211 3.789 9 N -0.434 5.434 10 C 0.701 3.299 11 O -0.561 6.561 12 N -0.680 5.680 13 C 0.162 3.838 14 C -0.251 4.251 15 C -0.097 4.097 16 C -0.158 4.158 17 C 0.121 3.879 18 C -0.465 4.465 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.812 5.812 22 Si 0.911 3.089 23 H -0.265 1.265 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.199 4.199 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.393 0.607 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.278 0.722 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 -7.253 15.122 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.038 4.038 4 C 0.015 3.985 5 N -0.362 5.362 6 C -0.008 4.008 7 C -0.093 4.093 8 C -0.108 4.108 9 N -0.111 5.111 10 C 0.403 3.597 11 O -0.436 6.436 12 N -0.327 5.327 13 C 0.069 3.931 14 C -0.273 4.273 15 C -0.116 4.116 16 C -0.178 4.178 17 C 0.119 3.881 18 C -0.496 4.496 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.439 5.439 22 Si 0.736 3.264 23 H -0.190 1.190 24 H -0.205 1.205 25 H -0.192 1.192 26 C -0.220 4.220 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.229 0.771 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.135 0.865 42 H 0.089 0.911 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.300 -8.214 14.833 17.005 hybrid contribution -0.685 0.714 -0.270 1.026 sum -1.985 -7.500 14.563 16.500 Atomic orbital electron populations 1.22706 0.81189 1.02471 1.00020 1.87811 1.19609 1.28092 1.95484 1.23101 0.94627 0.84880 1.01148 1.21384 0.91846 1.00422 0.84893 1.47030 1.71622 1.05278 1.12309 1.21372 0.94289 0.81445 1.03688 1.19864 1.00985 0.82307 1.06147 1.28952 0.93537 0.94967 0.93320 1.81252 1.08199 1.12903 1.08725 1.15935 0.78458 0.85291 0.80001 1.90985 1.58438 1.11726 1.82432 1.42749 1.70498 1.10725 1.08773 1.17242 0.96157 0.94194 0.85464 1.20063 1.02106 1.05416 0.99672 1.20484 0.99000 0.96189 0.95899 1.21362 0.95867 0.98726 1.01874 1.17491 0.90011 0.91052 0.89587 1.19481 1.26625 1.11034 0.92479 0.90609 1.25827 0.95378 0.97104 0.95874 1.69767 1.38531 1.35047 1.00528 0.86325 0.80444 0.82012 0.77588 1.18992 1.20499 1.19197 1.21090 1.01525 0.97898 1.01503 0.89886 0.94287 0.93976 0.92490 0.92218 0.89733 0.87848 0.88055 0.90031 0.87059 0.86765 0.77148 0.89269 0.88974 0.86479 0.91141 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.01 9.53 -35.23 -0.34 -4.34 16 3 C 0.04 0.41 6.28 37.16 0.23 0.64 16 4 C 0.14 1.30 5.81 -4.04 -0.02 1.28 16 5 N -0.62 -7.00 2.44 -179.43 -0.44 -7.44 16 6 C 0.12 0.97 4.90 -4.05 -0.02 0.95 16 7 C -0.05 -0.33 6.03 -29.52 -0.18 -0.51 16 8 C 0.21 1.91 15.43 -20.76 -0.32 1.59 16 9 N -0.43 -5.33 18.54 42.15 0.78 -4.55 16 10 C 0.70 11.51 8.00 -86.92 -0.69 10.82 16 11 O -0.56 -11.72 13.71 5.29 0.07 -11.65 16 12 N -0.68 -11.39 5.16 -14.27 -0.07 -11.47 16 13 C 0.16 3.52 6.24 -83.76 -0.52 3.00 16 14 C -0.25 -5.33 9.97 -39.10 -0.39 -5.72 16 15 C -0.10 -2.21 10.02 -39.69 -0.40 -2.61 16 16 C -0.16 -4.11 8.62 -38.84 -0.33 -4.44 16 17 C 0.12 3.29 5.50 -106.85 -0.59 2.71 16 18 C -0.47 -12.72 9.04 -37.74 -0.34 -13.06 16 19 H 0.08 2.04 7.85 -52.49 -0.41 1.62 16 20 C 0.07 1.89 5.31 -17.34 -0.09 1.79 16 21 N -0.81 -21.35 10.98 55.55 0.61 -20.74 16 22 Si 0.91 19.29 29.56 -169.99 -5.03 14.27 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.20 -5.02 8.39 -38.69 -0.32 -5.35 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.10 1.07 7.42 -51.93 -0.39 0.68 16 34 H 0.10 0.78 7.11 -51.93 -0.37 0.41 16 35 H 0.08 0.71 6.45 -51.93 -0.34 0.37 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.39 5.17 6.64 -40.82 -0.27 4.90 16 39 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 41 H 0.12 3.14 6.49 -52.49 -0.34 2.80 16 42 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 43 H 0.11 2.79 6.52 -52.49 -0.34 2.45 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -32.95 369.74 -7.53 -40.49 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.81 Total: 7.38 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.88 Total: -7.52 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.88 Total: -44.20 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.26 Total: -15.99 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.95 -7.53 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.402 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds