Wall clock time and date at job start Tue Mar 31 2020 11:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00097 * 2 1 4 4 C 1.53006 * 109.47177 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46768 * 65.00195 * 4 3 2 6 6 C 1.46496 * 120.00116 * 269.99752 * 5 4 3 7 7 C 1.52996 * 109.47189 * 270.00452 * 6 5 4 8 8 C 1.47201 * 109.47345 * 180.02562 * 7 6 5 9 9 N 5.92362 * 136.88566 * 195.72096 * 2 1 3 10 10 C 1.34775 * 119.99782 * 90.00333 * 5 4 3 11 11 O 1.21590 * 120.00404 * 359.97438 * 10 5 4 12 12 N 1.34781 * 120.00129 * 179.97438 * 10 5 4 13 13 C 1.39952 * 120.00032 * 174.30438 * 12 10 5 14 14 C 1.39283 * 119.94762 * 145.34775 * 13 12 10 15 15 C 1.38486 * 120.43399 * 179.97438 * 14 13 12 16 16 C 1.37689 * 120.31817 * 0.29198 * 15 14 13 17 17 C 1.40736 * 119.87952 * 359.43609 * 16 15 14 18 18 C 1.41418 * 120.20971 * 180.31383 * 17 16 15 19 19 H 1.07996 * 119.99948 * 214.57395 * 18 17 16 20 20 C 1.39932 * 119.99651 * 34.56653 * 18 17 16 21 21 N 1.30829 * 120.00222 * 5.44706 * 20 18 17 22 22 Si 1.86801 * 119.99927 * 185.44240 * 20 18 17 23 23 H 1.48500 * 109.47173 * 60.00204 * 22 20 18 24 24 H 1.48498 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47076 * 300.00303 * 22 20 18 26 26 C 1.38237 * 119.94668 * 325.31721 * 13 12 10 27 27 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46837 * 299.99586 * 1 2 3 29 29 H 1.08996 * 109.46879 * 59.99570 * 1 2 3 30 30 H 1.09005 * 109.47122 * 60.00446 * 3 2 1 31 31 H 1.09000 * 109.47569 * 300.00711 * 3 2 1 32 32 H 1.08997 * 109.46804 * 305.00145 * 4 3 2 33 33 H 1.08999 * 109.47045 * 185.00422 * 4 3 2 34 34 H 1.08996 * 109.47181 * 30.00581 * 6 5 4 35 35 H 1.09001 * 109.47021 * 150.00362 * 6 5 4 36 36 H 1.09004 * 109.47069 * 299.99811 * 7 6 5 37 37 H 1.08993 * 109.47417 * 59.99804 * 7 6 5 38 38 H 0.96998 * 119.99501 * 354.30374 * 12 10 5 39 39 H 1.08004 * 119.78310 * 359.97438 * 14 13 12 40 40 H 1.08003 * 119.84208 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.05234 * 179.70842 * 16 15 14 42 42 H 0.96998 * 120.00326 * 179.97438 * 21 20 18 43 43 H 1.07991 * 120.16169 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3404 7 6 5.5230 -1.3044 -0.9352 8 6 5.6534 -2.7678 -1.0257 9 7 5.7532 -3.8971 -1.0970 10 6 4.2634 1.3329 -2.3199 11 8 4.1555 2.5417 -2.2459 12 7 4.6697 0.7620 -3.4713 13 6 4.8527 1.5472 -4.6152 14 6 5.8683 1.2369 -5.5164 15 6 6.0580 2.0067 -6.6519 16 6 5.2474 3.0919 -6.8993 17 6 4.2134 3.4140 -6.0006 18 6 3.3725 4.5230 -6.2513 19 1 2.9958 5.1120 -5.4282 20 6 3.0288 4.8573 -7.5659 21 7 3.3963 4.0838 -8.5550 22 14 2.0450 6.4079 -7.9086 23 1 2.8006 7.5907 -7.4236 24 1 1.8124 6.5337 -9.3699 25 1 0.7396 6.3316 -7.2047 26 6 4.0246 2.6291 -4.8493 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5684 0.8427 33 1 3.9785 2.1764 0.0903 34 1 3.3858 -1.3632 -0.6715 35 1 3.9139 -1.2122 -2.3645 36 1 6.2435 -0.8337 -1.6042 37 1 5.7154 -0.9847 0.0889 38 1 4.8354 -0.1931 -3.5069 39 1 6.5122 0.3904 -5.3284 40 1 6.8483 1.7573 -7.3445 41 1 5.4022 3.6920 -7.7838 42 1 3.1577 4.3153 -9.4663 43 1 3.2362 2.8699 -4.1517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466577616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:32 Heat of formation + Delta-G solvation = -38.616551 kcal Electronic energy + Delta-G solvation = -26123.247497 eV Core-core repulsion = 22361.112894 eV Total energy + Delta-G solvation = -3762.134603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67302 -39.44879 -38.61781 -37.98726 -36.62825 -36.16050 -34.76054 -32.72823 -31.67551 -30.85677 -29.28276 -27.22946 -27.09917 -25.28964 -24.36269 -22.86789 -22.46589 -20.62979 -19.67969 -19.00625 -18.55010 -17.58395 -17.30428 -17.07052 -16.84097 -16.47425 -16.30240 -16.02301 -15.77515 -15.59146 -15.23022 -14.81537 -14.65868 -14.55974 -13.99609 -13.74899 -13.72530 -13.50082 -13.22911 -13.08057 -12.91844 -12.84550 -12.79001 -12.77144 -12.69620 -12.16415 -12.10612 -12.02938 -11.80307 -11.47502 -11.15646 -10.99105 -10.71479 -10.58293 -9.76109 -9.25897 -8.65838 -8.46787 -6.35696 0.97417 1.06480 1.37971 1.49342 1.50352 1.54207 1.83628 1.85716 2.22980 2.25599 2.81693 2.85607 2.90249 3.27899 3.74972 3.95083 4.00656 4.22859 4.25510 4.41431 4.48657 4.51679 4.56546 4.61405 4.66082 4.68961 4.77333 4.87937 4.97062 5.04403 5.09698 5.15269 5.18157 5.20296 5.37252 5.56635 5.76128 5.87613 6.04164 6.12555 6.18399 6.23429 6.43202 6.62406 6.74723 6.97862 7.00718 7.06587 7.62601 8.45423 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.003576 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.265065 B = 7828.649489 C = 9405.534300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.043 3.957 4 C 0.134 3.866 5 N -0.609 5.609 6 C 0.115 3.885 7 C -0.040 4.040 8 C 0.242 3.758 9 N -0.492 5.492 10 C 0.699 3.301 11 O -0.610 6.610 12 N -0.671 5.671 13 C 0.172 3.828 14 C -0.237 4.237 15 C -0.095 4.095 16 C -0.184 4.184 17 C 0.090 3.910 18 C -0.509 4.509 19 H 0.061 0.939 20 C 0.034 3.966 21 N -0.840 5.840 22 Si 0.981 3.019 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.265 1.265 26 C -0.221 4.221 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.021 0.979 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.146 0.854 38 H 0.414 0.586 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.285 0.715 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 -8.759 16.656 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.035 4.035 4 C 0.012 3.988 5 N -0.345 5.345 6 C -0.009 4.009 7 C -0.081 4.081 8 C -0.076 4.076 9 N -0.170 5.170 10 C 0.401 3.599 11 O -0.489 6.489 12 N -0.320 5.320 13 C 0.078 3.922 14 C -0.258 4.258 15 C -0.114 4.114 16 C -0.205 4.205 17 C 0.087 3.913 18 C -0.540 4.540 19 H 0.080 0.920 20 C -0.178 4.178 21 N -0.467 5.467 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.188 1.188 25 H -0.190 1.190 26 C -0.243 4.243 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.147 0.853 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.137 0.863 37 H 0.164 0.836 38 H 0.253 0.747 39 H 0.152 0.848 40 H 0.141 0.859 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.639 -9.802 16.417 19.131 hybrid contribution -0.870 1.045 -0.603 1.488 sum -1.509 -8.756 15.814 18.139 Atomic orbital electron populations 1.22839 0.80351 1.03534 1.00104 1.87777 1.20564 1.27880 1.95494 1.23044 0.95161 0.84889 1.00406 1.21635 0.91269 1.00911 0.85025 1.46982 1.69938 1.06235 1.11307 1.21541 0.96061 0.79203 1.04127 1.19909 0.99521 0.80395 1.08285 1.29242 0.91810 0.95065 0.91468 1.81300 1.10054 1.14765 1.10848 1.16131 0.78044 0.84972 0.80760 1.90966 1.60268 1.14300 1.83370 1.42512 1.70593 1.11309 1.07625 1.17267 0.94936 0.93174 0.86783 1.20498 1.01458 1.05700 0.98194 1.20847 0.98763 0.94954 0.96863 1.21290 0.97094 1.00453 1.01620 1.17801 0.90793 0.91828 0.90834 1.19658 1.28611 1.12452 0.93252 0.92029 1.26615 0.96077 1.00109 0.95024 1.69826 1.39433 1.36497 1.00974 0.85275 0.78686 0.77736 0.78065 1.18602 1.18840 1.18980 1.21024 1.02492 0.99786 1.01038 0.88362 0.92753 0.95392 0.90261 0.96052 0.85332 0.88934 0.86700 0.90369 0.86252 0.83582 0.74712 0.84819 0.85924 0.88316 0.90482 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -7.35 9.53 -148.98 -1.42 -8.77 16 3 C 0.04 0.81 6.28 71.98 0.45 1.27 16 4 C 0.13 2.21 5.81 86.38 0.50 2.72 16 5 N -0.61 -12.31 2.44 -839.85 -2.05 -14.36 16 6 C 0.12 1.50 4.90 86.38 0.42 1.93 16 7 C -0.04 -0.34 6.03 28.79 0.17 -0.17 16 8 C 0.24 3.63 15.43 89.44 1.38 5.01 16 9 N -0.49 -11.13 18.54 20.01 0.37 -10.76 16 10 C 0.70 22.41 8.00 179.05 1.43 23.84 16 11 O -0.61 -26.19 13.71 -4.00 -0.05 -26.24 16 12 N -0.67 -21.42 5.16 -317.32 -1.64 -23.06 16 13 C 0.17 7.42 6.24 38.10 0.24 7.66 16 14 C -0.24 -9.51 9.97 22.58 0.23 -9.29 16 15 C -0.10 -4.26 10.02 22.20 0.22 -4.03 16 16 C -0.18 -9.85 8.62 22.75 0.20 -9.65 16 17 C 0.09 5.13 5.50 -21.31 -0.12 5.01 16 18 C -0.51 -29.55 9.04 23.46 0.21 -29.34 16 19 H 0.06 3.58 7.85 -2.91 -0.02 3.55 16 20 C 0.03 1.82 5.31 85.25 0.45 2.27 16 21 N -0.84 -45.65 10.98 21.82 0.24 -45.41 16 22 Si 0.98 40.74 29.56 68.60 2.03 42.77 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 26 C -0.22 -11.68 8.39 22.85 0.19 -11.49 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.13 1.05 8.07 -2.39 -0.02 1.03 16 33 H 0.09 1.80 7.42 -2.39 -0.02 1.79 16 34 H 0.11 1.31 7.11 -2.39 -0.02 1.30 16 35 H 0.08 1.11 6.45 -2.39 -0.02 1.10 16 36 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.41 9.64 6.64 -92.71 -0.62 9.03 16 39 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.10 5.53 6.49 -2.91 -0.02 5.51 16 42 H 0.28 14.06 8.30 -92.71 -0.77 13.29 16 43 H 0.08 4.73 6.52 -2.92 -0.02 4.72 16 Total: -1.00 -77.55 369.74 5.14 -72.42 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.42 Total: 26.01 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 7.23 Total: -12.59 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -3.07 Total: -93.59 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.47 Total: -35.01 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -77.55 5.14 -72.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.801 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds