Wall clock time and date at job start Tue Mar 31 2020 11:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99980 * 2 1 4 4 C 1.52996 * 109.47216 * 66.04589 * 3 2 1 5 5 C 1.52997 * 109.47058 * 180.02562 * 4 3 2 6 6 S 1.81005 * 109.47001 * 179.97438 * 5 4 3 7 7 C 1.76200 * 99.99833 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00077 * 0.02562 * 7 6 5 9 9 C 1.38804 * 120.00124 * 180.02562 * 7 6 5 10 10 N 1.31627 * 119.99638 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47153 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47247 * 119.99917 * 11 9 7 14 14 H 1.48505 * 109.47007 * 239.99957 * 11 9 7 15 15 C 1.46896 * 111.00353 * 236.04222 * 2 1 3 16 16 H 1.09004 * 109.46987 * 63.95383 * 15 2 1 17 17 C 1.53006 * 109.47270 * 303.95736 * 15 2 1 18 18 O 1.42900 * 109.46774 * 294.99427 * 17 15 2 19 19 C 1.42897 * 113.99874 * 179.97438 * 18 17 15 20 20 C 1.53787 * 113.61531 * 249.13826 * 19 18 17 21 21 C 1.53959 * 87.01874 * 220.05014 * 20 19 18 22 22 C 1.53779 * 87.11327 * 25.36238 * 21 20 19 23 23 C 1.50697 * 109.47652 * 183.95232 * 15 2 1 24 24 O 1.20833 * 119.99747 * 0.02562 * 23 15 2 25 25 O 1.34230 * 120.00262 * 179.72202 * 23 15 2 26 26 H 1.09000 * 109.46731 * 183.95489 * 1 2 3 27 27 H 1.08994 * 109.47296 * 303.95230 * 1 2 3 28 28 H 1.08991 * 109.46886 * 63.95797 * 1 2 3 29 29 H 1.08994 * 109.46748 * 186.04578 * 3 2 1 30 30 H 1.09001 * 109.46624 * 306.04231 * 3 2 1 31 31 H 1.09007 * 109.47000 * 300.00191 * 4 3 2 32 32 H 1.08996 * 109.47298 * 59.99920 * 4 3 2 33 33 H 1.08998 * 109.47357 * 299.99718 * 5 4 3 34 34 H 1.08998 * 109.47228 * 60.00258 * 5 4 3 35 35 H 0.97006 * 119.99932 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47050 * 54.99483 * 17 15 2 37 37 H 1.08994 * 109.46869 * 174.99835 * 17 15 2 38 38 H 1.08994 * 112.84909 * 20.33644 * 19 18 17 39 39 H 1.08995 * 113.61395 * 334.56728 * 20 19 18 40 40 H 1.08995 * 113.60912 * 105.47351 * 20 19 18 41 41 H 1.09005 * 113.53683 * 270.81200 * 21 20 19 42 42 H 1.08993 * 113.74381 * 139.94461 * 21 20 19 43 43 H 1.08999 * 113.61516 * 220.09033 * 22 21 20 44 44 H 1.08999 * 113.69102 * 89.19713 * 22 21 20 45 45 H 0.96699 * 116.99771 * 180.27188 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1792 3.4860 1.3179 6 16 1.7479 4.2979 2.8772 7 6 2.4808 5.8782 2.6122 8 1 2.9999 6.0846 1.6879 9 6 2.3910 6.8579 3.5914 10 7 1.7578 6.6065 4.7176 11 14 3.1673 8.5334 3.3102 12 1 3.8141 8.5613 1.9737 13 1 2.1181 9.5822 3.3747 14 1 4.1874 8.7886 4.3588 15 6 1.9955 -0.7660 -1.1375 16 1 1.7044 -0.2800 -2.0687 17 6 1.4261 -2.1858 -1.1036 18 8 1.9031 -2.8626 0.0610 19 6 1.4273 -4.2039 0.1896 20 6 0.4387 -4.3982 1.3514 21 6 1.1467 -5.7379 1.6238 22 6 2.3896 -5.1282 0.9542 23 6 3.4988 -0.8255 -1.0505 24 8 4.0727 -0.2855 -0.1345 25 8 4.1998 -1.4834 -1.9872 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5739 0.8524 28 1 -0.3633 0.4511 -0.9233 29 1 3.0796 1.3444 -0.1082 30 1 1.5611 1.9273 -0.8310 31 1 0.5471 2.0845 1.4265 32 1 2.0658 1.5016 2.1491 33 1 3.2635 3.4594 1.2095 34 1 1.7445 4.0417 0.4871 35 1 1.6947 7.2912 5.4018 36 1 0.3374 -2.1400 -1.0770 37 1 1.7454 -2.7266 -1.9944 38 1 1.0787 -4.6216 -0.7549 39 1 0.5589 -3.6699 2.1534 40 1 -0.5969 -4.5081 1.0297 41 1 0.7202 -6.5757 1.0721 42 1 1.2835 -5.9546 2.6832 43 1 2.9266 -5.8266 0.3123 44 1 3.0451 -4.5997 1.6463 45 1 5.1615 -1.4975 -1.8867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598482816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:25 Heat of formation + Delta-G solvation = -108.369954 kcal Electronic energy + Delta-G solvation = -24654.299458 eV Core-core repulsion = 20992.291321 eV Total energy + Delta-G solvation = -3662.008137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71335 -39.42065 -37.91123 -36.29640 -35.80268 -33.08035 -32.36011 -30.03146 -27.36145 -25.92505 -25.64931 -25.15322 -24.34649 -23.54882 -20.85304 -20.41058 -19.90795 -18.28558 -17.53884 -17.40727 -16.74816 -16.29228 -16.15805 -15.53923 -14.97863 -14.75716 -14.66817 -14.64912 -14.17326 -13.87464 -13.66905 -13.00074 -12.86862 -12.76935 -12.67404 -12.43879 -12.19155 -11.93639 -11.89228 -11.57148 -11.46499 -11.23579 -11.12815 -11.03685 -10.99911 -10.72198 -10.67676 -10.55176 -10.41419 -9.90451 -9.62911 -9.44791 -9.00493 -8.38739 -8.20769 -6.44350 -6.16664 -3.85648 2.15389 2.70953 3.24887 3.26428 3.33901 3.37106 3.55139 3.84392 4.28900 4.30060 4.32442 4.47621 4.58120 4.64989 4.83640 4.87164 4.98765 5.05747 5.18762 5.19355 5.29497 5.30491 5.40767 5.43641 5.50056 5.52898 5.60342 5.68898 5.70044 5.84166 5.87114 5.90382 6.02625 6.03353 6.19858 6.42633 6.48146 6.72216 6.79363 6.93990 7.04437 7.05076 7.67025 7.85060 8.43336 9.29629 10.91649 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019991 B = 0.002480 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.304523 B =11286.224988 C =11931.615440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.514 5.514 3 C 0.044 3.956 4 C -0.087 4.087 5 C -0.111 4.111 6 S -0.133 6.133 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.069 3.931 10 N -0.870 5.870 11 Si 0.918 3.082 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.098 3.902 16 H 0.088 0.912 17 C 0.071 3.929 18 O -0.354 6.354 19 C 0.060 3.940 20 C -0.156 4.156 21 C -0.143 4.143 22 C -0.136 4.136 23 C 0.486 3.514 24 O -0.480 6.480 25 O -0.522 6.522 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.096 0.904 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.266 0.734 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -24.785 -15.020 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.240 5.240 3 C -0.084 4.084 4 C -0.126 4.126 5 C -0.260 4.260 6 S 0.096 5.904 7 C -0.662 4.662 8 H 0.090 0.910 9 C -0.139 4.139 10 N -0.506 5.506 11 Si 0.745 3.255 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.012 4.012 16 H 0.106 0.894 17 C -0.007 4.007 18 O -0.272 6.272 19 C 0.002 3.998 20 C -0.193 4.193 21 C -0.180 4.180 22 C -0.174 4.174 23 C 0.326 3.674 24 O -0.364 6.364 25 O -0.334 6.334 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.045 0.955 29 H 0.114 0.886 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -2.656 -25.077 -13.160 28.444 hybrid contribution 1.337 1.874 -2.062 3.091 sum -1.319 -23.203 -15.222 27.782 Atomic orbital electron populations 1.22558 0.86203 1.02372 1.01599 1.61719 1.07995 1.14803 1.39464 1.22581 1.02181 0.85702 0.97965 1.21196 1.00793 0.93927 0.96661 1.23216 1.02405 0.97470 1.02903 1.84612 1.74137 1.13202 1.18479 1.22742 1.40327 0.97462 1.05650 0.90988 1.25016 0.95306 0.99016 0.94560 1.70040 1.40211 1.34191 1.06153 0.86118 0.78863 0.82202 0.78365 1.19654 1.20625 1.20588 1.21219 0.88382 0.95927 0.95720 0.89422 1.22555 0.98664 0.90205 0.89248 1.88138 1.71065 1.25141 1.42864 1.23756 0.95941 0.82868 0.97244 1.23510 0.98466 0.97710 0.99660 1.22683 0.97081 0.96820 1.01450 1.23180 0.97106 0.97487 0.99584 1.22894 0.90649 0.74879 0.78973 1.90729 1.71362 1.41811 1.32538 1.84456 1.26242 1.70827 1.51889 0.91132 0.89643 0.95516 0.88584 0.95381 0.91895 0.90575 0.92110 0.92536 0.92434 0.91467 0.91792 0.89859 0.88765 0.91490 0.90215 0.90713 0.91257 0.89007 0.73062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.92 60.06 0.54 0.75 16 2 N -0.51 -6.78 4.38 -236.29 -1.03 -7.81 16 3 C 0.04 0.67 4.56 -3.82 -0.02 0.65 16 4 C -0.09 -1.58 5.15 -26.73 -0.14 -1.72 16 5 C -0.11 -2.41 5.67 37.16 0.21 -2.20 16 6 S -0.13 -3.63 21.44 -107.50 -2.30 -5.94 16 7 C -0.51 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 2.08 7.80 -52.49 -0.41 1.67 16 9 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 10 N -0.87 -26.68 13.22 55.49 0.73 -25.95 16 11 Si 0.92 22.13 29.55 -169.99 -5.02 17.11 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.10 1.05 2.39 -68.87 -0.16 0.88 16 16 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 17 C 0.07 0.62 5.02 37.16 0.19 0.81 16 18 O -0.35 -3.92 9.78 -35.23 -0.34 -4.27 16 19 C 0.06 0.50 4.30 -25.91 -0.11 0.39 16 20 C -0.16 -1.24 7.93 -25.82 -0.20 -1.45 16 21 C -0.14 -0.97 8.09 -25.83 -0.21 -1.18 16 22 C -0.14 -1.08 7.91 -25.92 -0.21 -1.28 16 23 C 0.49 6.00 6.79 36.00 0.24 6.25 16 24 O -0.48 -7.84 14.64 -18.76 -0.27 -8.11 16 25 O -0.52 -4.67 13.35 -39.26 -0.52 -5.20 16 26 H 0.07 0.65 6.13 -51.93 -0.32 0.33 16 27 H 0.08 1.02 6.30 -51.93 -0.33 0.69 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.10 1.62 5.21 -51.93 -0.27 1.35 16 30 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.06 1.10 6.47 -51.92 -0.34 0.76 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.35 8.14 -51.92 -0.42 0.92 16 34 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.07 0.49 6.06 -51.93 -0.31 0.17 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.54 7.88 -51.93 -0.41 0.13 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.41 2.16 9.10 45.56 0.41 2.58 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -35.71 378.49 -9.34 -45.05 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.60 Total: 0.51 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 0.33 Total: -11.11 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: -0.30 Total: -33.76 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -1.14 Total: -17.57 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.30 Total: -5.94 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.71 -9.34 -45.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598482816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.317 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds