Wall clock time and date at job start Tue Mar 31 2020 11:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99980 * 2 1 4 4 C 1.52996 * 109.47216 * 66.04589 * 3 2 1 5 5 C 1.52997 * 109.47058 * 180.02562 * 4 3 2 6 6 S 1.81005 * 109.47001 * 179.97438 * 5 4 3 7 7 C 1.76200 * 99.99833 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00077 * 0.02562 * 7 6 5 9 9 C 1.38804 * 120.00124 * 180.02562 * 7 6 5 10 10 N 1.31627 * 119.99638 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47153 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47247 * 119.99917 * 11 9 7 14 14 H 1.48505 * 109.47007 * 239.99957 * 11 9 7 15 15 C 1.46896 * 111.00353 * 236.04222 * 2 1 3 16 16 H 1.09004 * 109.46987 * 63.95383 * 15 2 1 17 17 C 1.53006 * 109.47270 * 303.95736 * 15 2 1 18 18 O 1.42900 * 109.46774 * 294.99427 * 17 15 2 19 19 C 1.42897 * 113.99874 * 179.97438 * 18 17 15 20 20 C 1.53787 * 113.61531 * 249.13826 * 19 18 17 21 21 C 1.53959 * 87.01874 * 220.05014 * 20 19 18 22 22 C 1.53779 * 87.11327 * 25.36238 * 21 20 19 23 23 C 1.50697 * 109.47652 * 183.95232 * 15 2 1 24 24 O 1.20833 * 119.99747 * 0.02562 * 23 15 2 25 25 O 1.34230 * 120.00262 * 179.72202 * 23 15 2 26 26 H 1.09000 * 109.46731 * 183.95489 * 1 2 3 27 27 H 1.08994 * 109.47296 * 303.95230 * 1 2 3 28 28 H 1.08991 * 109.46886 * 63.95797 * 1 2 3 29 29 H 1.08994 * 109.46748 * 186.04578 * 3 2 1 30 30 H 1.09001 * 109.46624 * 306.04231 * 3 2 1 31 31 H 1.09007 * 109.47000 * 300.00191 * 4 3 2 32 32 H 1.08996 * 109.47298 * 59.99920 * 4 3 2 33 33 H 1.08998 * 109.47357 * 299.99718 * 5 4 3 34 34 H 1.08998 * 109.47228 * 60.00258 * 5 4 3 35 35 H 0.97006 * 119.99932 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47050 * 54.99483 * 17 15 2 37 37 H 1.08994 * 109.46869 * 174.99835 * 17 15 2 38 38 H 1.08994 * 112.84909 * 20.33644 * 19 18 17 39 39 H 1.08995 * 113.61395 * 334.56728 * 20 19 18 40 40 H 1.08995 * 113.60912 * 105.47351 * 20 19 18 41 41 H 1.09005 * 113.53683 * 270.81200 * 21 20 19 42 42 H 1.08993 * 113.74381 * 139.94461 * 21 20 19 43 43 H 1.08999 * 113.61516 * 220.09033 * 22 21 20 44 44 H 1.08999 * 113.69102 * 89.19713 * 22 21 20 45 45 H 0.96699 * 116.99771 * 180.27188 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1792 3.4860 1.3179 6 16 1.7479 4.2979 2.8772 7 6 2.4808 5.8782 2.6122 8 1 2.9999 6.0846 1.6879 9 6 2.3910 6.8579 3.5914 10 7 1.7578 6.6065 4.7176 11 14 3.1673 8.5334 3.3102 12 1 3.8141 8.5613 1.9737 13 1 2.1181 9.5822 3.3747 14 1 4.1874 8.7886 4.3588 15 6 1.9955 -0.7660 -1.1375 16 1 1.7044 -0.2800 -2.0687 17 6 1.4261 -2.1858 -1.1036 18 8 1.9031 -2.8626 0.0610 19 6 1.4273 -4.2039 0.1896 20 6 0.4387 -4.3982 1.3514 21 6 1.1467 -5.7379 1.6238 22 6 2.3896 -5.1282 0.9542 23 6 3.4988 -0.8255 -1.0505 24 8 4.0727 -0.2855 -0.1345 25 8 4.1998 -1.4834 -1.9872 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5739 0.8524 28 1 -0.3633 0.4511 -0.9233 29 1 3.0796 1.3444 -0.1082 30 1 1.5611 1.9273 -0.8310 31 1 0.5471 2.0845 1.4265 32 1 2.0658 1.5016 2.1491 33 1 3.2635 3.4594 1.2095 34 1 1.7445 4.0417 0.4871 35 1 1.6947 7.2912 5.4018 36 1 0.3374 -2.1400 -1.0770 37 1 1.7454 -2.7266 -1.9944 38 1 1.0787 -4.6216 -0.7549 39 1 0.5589 -3.6699 2.1534 40 1 -0.5969 -4.5081 1.0297 41 1 0.7202 -6.5757 1.0721 42 1 1.2835 -5.9546 2.6832 43 1 2.9266 -5.8266 0.3123 44 1 3.0451 -4.5997 1.6463 45 1 5.1615 -1.4975 -1.8867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598482816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:24 Heat of formation + Delta-G solvation = -133.504105 kcal Electronic energy + Delta-G solvation = -24655.389357 eV Core-core repulsion = 20992.291321 eV Total energy + Delta-G solvation = -3663.098036 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61614 -40.07763 -38.83010 -37.11717 -36.67937 -34.64750 -34.37029 -30.98264 -28.43373 -27.77468 -26.54022 -26.07949 -25.22102 -24.54122 -22.18992 -21.32972 -20.51690 -19.57145 -19.13257 -18.30948 -17.61592 -17.21417 -16.99171 -16.91213 -16.33963 -16.16411 -16.07662 -15.45895 -15.27821 -14.99010 -14.88806 -14.58244 -13.88491 -13.57182 -13.43471 -13.38077 -13.33985 -13.18895 -13.14198 -12.94351 -12.73905 -12.56293 -12.53116 -12.33150 -12.26520 -11.92910 -11.75080 -11.54664 -11.33231 -11.24747 -11.16769 -11.04207 -10.33821 -10.28101 -9.32152 -8.68255 -8.38389 -6.15015 1.24507 1.29990 1.37517 1.48325 1.71794 1.94027 2.26847 2.73446 2.79078 2.95452 3.31810 3.68422 3.72923 3.84611 3.94650 3.97930 4.00073 4.12077 4.16937 4.26387 4.28231 4.39579 4.43335 4.53072 4.55558 4.58693 4.67286 4.73187 4.83262 4.85019 4.89946 5.05501 5.07723 5.09641 5.19790 5.27590 5.28822 5.38426 5.44946 5.68108 5.91037 6.02289 6.17292 6.41385 7.03321 7.03871 8.71559 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019991 B = 0.002480 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.304523 B =11286.224988 C =11931.615440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.535 5.535 3 C 0.057 3.943 4 C -0.075 4.075 5 C -0.085 4.085 6 S -0.196 6.196 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.013 3.987 10 N -0.908 5.908 11 Si 0.997 3.003 12 H -0.263 1.263 13 H -0.268 1.268 14 H -0.271 1.271 15 C 0.093 3.907 16 H 0.117 0.883 17 C 0.071 3.929 18 O -0.386 6.386 19 C 0.058 3.942 20 C -0.159 4.159 21 C -0.135 4.135 22 C -0.142 4.142 23 C 0.488 3.512 24 O -0.531 6.531 25 O -0.509 6.509 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.272 0.728 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 -25.585 -17.573 31.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.261 5.261 3 C -0.072 4.072 4 C -0.113 4.113 5 C -0.234 4.234 6 S 0.032 5.968 7 C -0.685 4.685 8 H 0.089 0.911 9 C -0.191 4.191 10 N -0.544 5.544 11 Si 0.819 3.181 12 H -0.187 1.187 13 H -0.193 1.193 14 H -0.197 1.197 15 C -0.016 4.016 16 H 0.134 0.866 17 C -0.006 4.006 18 O -0.306 6.306 19 C 0.000 4.000 20 C -0.197 4.197 21 C -0.172 4.172 22 C -0.180 4.180 23 C 0.330 3.670 24 O -0.420 6.420 25 O -0.322 6.322 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -3.162 -25.913 -15.740 30.484 hybrid contribution 1.511 1.990 -1.316 2.824 sum -1.651 -23.924 -17.056 29.428 Atomic orbital electron populations 1.22582 0.84736 1.03451 1.01819 1.61565 1.09402 1.13408 1.41689 1.22269 1.01421 0.87286 0.96188 1.21060 1.00768 0.91561 0.97957 1.23120 1.01983 0.98924 0.99404 1.84633 1.74723 1.13982 1.23438 1.23062 1.40996 0.98420 1.06067 0.91063 1.26112 0.95520 1.03517 0.93981 1.70170 1.41217 1.35889 1.07134 0.84927 0.78104 0.76387 0.78686 1.18739 1.19346 1.19658 1.21451 0.87285 0.97103 0.95785 0.86574 1.22707 0.99589 0.88851 0.89440 1.88114 1.71820 1.26514 1.44105 1.23958 0.95749 0.81930 0.98324 1.23473 0.99465 0.97754 0.99023 1.22697 0.96106 0.96865 1.01521 1.23182 0.97378 0.97827 0.99598 1.23327 0.91544 0.73783 0.78347 1.90720 1.72442 1.44142 1.34654 1.84416 1.27644 1.69674 1.50502 0.89359 0.91404 0.93510 0.90236 0.93789 0.91172 0.92862 0.92890 0.91621 0.91913 0.89592 0.89434 0.87233 0.91389 0.90035 0.88066 0.91088 0.89892 0.91522 0.71242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.92 127.69 1.14 1.55 16 2 N -0.53 -13.48 4.38 -901.50 -3.95 -17.42 16 3 C 0.06 1.72 4.56 86.30 0.39 2.12 16 4 C -0.07 -2.76 5.15 30.59 0.16 -2.60 16 5 C -0.08 -3.76 5.67 71.98 0.41 -3.35 16 6 S -0.20 -11.11 21.44 -56.49 -1.21 -12.33 16 7 C -0.54 -32.48 9.50 67.96 0.65 -31.83 16 8 H 0.07 4.17 7.80 -2.91 -0.02 4.14 16 9 C 0.01 0.79 5.49 84.86 0.47 1.26 16 10 N -0.91 -56.48 13.22 21.65 0.29 -56.20 16 11 Si 1.00 45.37 29.55 68.60 2.03 47.39 16 12 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 13 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 C 0.09 1.80 2.39 44.17 0.11 1.90 16 16 H 0.12 1.59 8.14 -2.38 -0.02 1.58 16 17 C 0.07 1.03 5.02 71.98 0.36 1.40 16 18 O -0.39 -8.03 9.78 -148.98 -1.46 -9.48 16 19 C 0.06 0.85 4.30 31.12 0.13 0.99 16 20 C -0.16 -2.36 7.93 31.18 0.25 -2.12 16 21 C -0.13 -1.64 8.09 31.18 0.25 -1.38 16 22 C -0.14 -2.13 7.91 31.12 0.25 -1.89 16 23 C 0.49 11.53 6.79 71.23 0.48 12.02 16 24 O -0.53 -17.64 14.64 21.94 0.32 -17.32 16 25 O -0.51 -8.15 13.35 -51.41 -0.69 -8.84 16 26 H 0.09 1.40 6.13 -2.39 -0.01 1.39 16 27 H 0.07 1.56 6.30 -2.39 -0.02 1.55 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 2.71 5.21 -2.39 -0.01 2.70 16 30 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 31 H 0.07 2.48 6.47 -2.38 -0.02 2.46 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 2.40 8.14 -2.40 -0.02 2.38 16 34 H 0.07 2.77 8.14 -2.40 -0.02 2.75 16 35 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 36 H 0.09 0.93 6.06 -2.39 -0.01 0.91 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 1.02 7.88 -2.39 -0.02 1.00 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.43 3.88 9.10 -74.06 -0.67 3.20 16 Total: -1.00 -79.73 378.49 0.68 -79.04 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.31 Total: 17.10 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 5.04 Total: -21.95 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -3.66 Total: -73.62 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.82 Total: -35.64 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: -11.11 SS G_CDS: -1.21 Total: -12.33 kcal Total: -79.73 0.68 -79.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598482816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.460 kcal (2) G-P(sol) polarization free energy of solvation -79.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds