Wall clock time and date at job start Tue Mar 31 2020 11:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 110.99806 * 2 1 4 4 C 1.53006 * 109.47314 * 293.95393 * 3 2 1 5 5 C 1.52999 * 109.47355 * 180.02562 * 4 3 2 6 6 S 1.80993 * 109.47316 * 180.02562 * 5 4 3 7 7 C 1.76194 * 100.00132 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00350 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99953 * 180.02562 * 7 6 5 10 10 N 1.31629 * 120.00103 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00188 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47324 * 89.99934 * 11 9 7 13 13 H 1.48494 * 109.47120 * 210.00144 * 11 9 7 14 14 H 1.48501 * 109.46992 * 330.00142 * 11 9 7 15 15 C 1.46892 * 111.00015 * 123.95156 * 2 1 3 16 16 H 1.09000 * 109.47653 * 296.05146 * 15 2 1 17 17 C 1.52998 * 109.47024 * 56.05091 * 15 2 1 18 18 O 1.42900 * 109.47570 * 64.99671 * 17 15 2 19 19 C 1.42899 * 114.00232 * 179.97438 * 18 17 15 20 20 C 1.53777 * 113.61737 * 249.13602 * 19 18 17 21 21 C 1.53947 * 87.02130 * 220.05029 * 20 19 18 22 22 C 1.53781 * 87.11366 * 25.36292 * 21 20 19 23 23 C 1.50706 * 109.47226 * 176.04856 * 15 2 1 24 24 O 1.20825 * 119.99859 * 359.97438 * 23 15 2 25 25 O 1.34224 * 120.00295 * 180.02562 * 23 15 2 26 26 H 1.08999 * 109.47273 * 296.04690 * 1 2 3 27 27 H 1.09004 * 109.47592 * 56.04475 * 1 2 3 28 28 H 1.09004 * 109.47407 * 176.04691 * 1 2 3 29 29 H 1.09004 * 109.47618 * 53.95223 * 3 2 1 30 30 H 1.08997 * 109.47303 * 173.95590 * 3 2 1 31 31 H 1.08995 * 109.46730 * 300.00124 * 4 3 2 32 32 H 1.08997 * 109.46775 * 59.99873 * 4 3 2 33 33 H 1.08999 * 109.46856 * 300.00094 * 5 4 3 34 34 H 1.08998 * 109.47094 * 59.99668 * 5 4 3 35 35 H 0.96993 * 120.00255 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.47333 * 184.99667 * 17 15 2 37 37 H 1.09004 * 109.46935 * 304.99360 * 17 15 2 38 38 H 1.09003 * 112.84752 * 20.33566 * 19 18 17 39 39 H 1.09004 * 113.61475 * 334.57247 * 20 19 18 40 40 H 1.09007 * 113.61408 * 105.46711 * 20 19 18 41 41 H 1.09003 * 113.53397 * 270.81165 * 21 20 19 42 42 H 1.09000 * 113.66743 * 139.93274 * 21 20 19 43 43 H 1.08997 * 113.61681 * 220.08976 * 22 21 20 44 44 H 1.08999 * 113.69013 * 89.19723 * 22 21 20 45 45 H 0.96700 * 117.00196 * 179.97438 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1802 3.4857 -1.3186 6 16 1.7489 4.2975 -2.8777 7 6 2.4830 5.8773 -2.6134 8 1 3.0027 6.0835 -1.6894 9 6 2.3925 6.8571 -3.5924 10 7 2.9405 8.0375 -3.3948 11 14 1.4919 6.5012 -5.1897 12 1 0.0600 6.8665 -5.0428 13 1 2.0961 7.2987 -6.2870 14 1 1.6036 5.0553 -5.5093 15 6 1.9954 -0.7659 1.1375 16 1 1.7043 -0.2799 2.0688 17 6 1.4261 -2.1856 1.1037 18 8 1.9030 -2.8625 -0.0610 19 6 1.4282 -4.2042 -0.1888 20 6 2.5228 -5.2664 0.0068 21 6 1.8685 -6.0386 -1.1532 22 6 1.3278 -4.6859 -1.6459 23 6 3.4988 -0.8253 1.0505 24 8 4.0727 -0.2855 0.1346 25 8 4.2001 -1.4789 1.9900 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0708 29 1 1.5610 1.9274 0.8309 30 1 3.0796 1.3445 0.1082 31 1 2.0657 1.5016 -2.1491 32 1 0.5471 2.0845 -1.4265 33 1 1.7462 4.0418 -0.4876 34 1 3.2644 3.4583 -1.2105 35 1 2.8770 8.7223 -4.0787 36 1 1.7454 -2.7265 1.9945 37 1 0.3373 -2.1399 1.0771 38 1 0.5278 -4.3921 0.3962 39 1 3.5264 -4.9061 -0.2196 40 1 2.4637 -5.7830 0.9649 41 1 1.0891 -6.7293 -0.8314 42 1 2.5862 -6.4961 -1.8342 43 1 0.3053 -4.7345 -2.0202 44 1 2.0029 -4.1656 -2.3252 45 1 5.1620 -1.4900 1.8914 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598482819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:28 Heat of formation + Delta-G solvation = -108.029294 kcal Electronic energy + Delta-G solvation = -24676.673220 eV Core-core repulsion = 21014.679855 eV Total energy + Delta-G solvation = -3661.993365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75293 -39.46286 -37.97351 -36.33409 -35.84805 -33.18515 -32.37953 -30.10407 -27.42763 -25.97553 -25.71632 -25.24568 -24.43263 -23.62683 -20.94099 -20.46346 -19.96457 -18.32256 -17.53641 -17.43747 -16.84984 -16.37233 -16.13710 -15.56676 -14.96379 -14.95650 -14.81897 -14.68923 -14.26714 -13.87442 -13.68862 -13.01176 -12.89187 -12.79020 -12.73357 -12.48951 -12.31402 -12.14204 -11.96854 -11.67844 -11.57195 -11.38646 -11.24730 -11.05872 -10.99785 -10.94748 -10.72838 -10.47991 -10.08536 -9.97440 -9.71745 -9.65986 -8.94899 -8.48710 -8.44727 -6.86504 -6.22884 -3.94018 2.12283 2.66986 3.06557 3.33453 3.34271 3.51058 3.54617 3.79001 4.25041 4.27756 4.37319 4.42744 4.53931 4.61799 4.78719 4.81288 4.88609 4.97818 5.00514 5.13455 5.15961 5.23309 5.25378 5.35912 5.41368 5.47857 5.54639 5.58163 5.64699 5.73626 5.78933 5.82487 5.91476 5.97164 6.10157 6.30448 6.43832 6.60620 6.69369 6.86046 6.95915 7.00009 7.81897 8.01091 8.50163 9.23276 10.86719 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.002567 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.895636 B =10905.640997 C =11557.129559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.515 5.515 3 C 0.044 3.956 4 C -0.091 4.091 5 C -0.080 4.080 6 S -0.215 6.215 7 C -0.500 4.500 8 H 0.087 0.913 9 C 0.090 3.910 10 N -0.884 5.884 11 Si 0.862 3.138 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.237 1.237 15 C 0.098 3.902 16 H 0.089 0.911 17 C 0.070 3.930 18 O -0.354 6.354 19 C 0.061 3.939 20 C -0.157 4.157 21 C -0.143 4.143 22 C -0.135 4.135 23 C 0.487 3.513 24 O -0.480 6.480 25 O -0.521 6.521 26 H 0.027 0.973 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.270 0.730 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 -28.633 12.480 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.240 5.240 3 C -0.085 4.085 4 C -0.129 4.129 5 C -0.229 4.229 6 S 0.013 5.987 7 C -0.648 4.648 8 H 0.105 0.895 9 C -0.118 4.118 10 N -0.521 5.521 11 Si 0.687 3.313 12 H -0.194 1.194 13 H -0.202 1.202 14 H -0.161 1.161 15 C -0.012 4.012 16 H 0.107 0.893 17 C -0.007 4.007 18 O -0.272 6.272 19 C 0.003 3.997 20 C -0.195 4.195 21 C -0.180 4.180 22 C -0.172 4.172 23 C 0.327 3.673 24 O -0.365 6.365 25 O -0.334 6.334 26 H 0.046 0.954 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -4.899 -28.808 10.724 31.127 hybrid contribution 0.573 0.983 1.236 1.680 sum -4.326 -27.825 11.960 30.594 Atomic orbital electron populations 1.22559 0.86213 1.02371 1.01599 1.61707 1.07988 1.14729 1.39601 1.22560 1.02353 0.85791 0.97761 1.21254 1.00858 0.93816 0.97003 1.22999 1.02913 0.96896 1.00132 1.84126 1.75534 1.15986 1.23070 1.22142 1.40201 0.94992 1.07440 0.89479 1.24803 0.94547 0.94049 0.98355 1.69940 1.43359 1.03764 1.35009 0.86660 0.80380 0.81177 0.83088 1.19442 1.20168 1.16071 1.21219 0.88447 0.95902 0.95678 0.89328 1.22558 0.98500 0.90117 0.89516 1.88135 1.71059 1.25246 1.42782 1.23750 0.96444 0.81675 0.97847 1.23507 0.99969 0.97171 0.98815 1.22690 1.00574 0.96305 0.98480 1.23178 1.02181 0.95660 0.96226 1.22869 0.90628 0.74856 0.78992 1.90725 1.71374 1.41751 1.32658 1.84454 1.26234 1.70975 1.51688 0.95427 0.89722 0.91141 0.95182 0.88430 0.90462 0.91795 0.91800 0.91341 0.92049 0.91731 0.91479 0.89762 0.89297 0.91478 0.90129 0.90779 0.91040 0.88893 0.73020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.92 60.06 0.54 0.74 16 2 N -0.51 -6.47 4.38 -236.29 -1.03 -7.50 16 3 C 0.04 0.64 4.56 -3.82 -0.02 0.62 16 4 C -0.09 -1.55 5.15 -26.73 -0.14 -1.69 16 5 C -0.08 -1.67 5.67 37.16 0.21 -1.46 16 6 S -0.21 -5.48 19.41 -107.50 -2.09 -7.57 16 7 C -0.50 -15.00 10.04 30.94 0.31 -14.69 16 8 H 0.09 2.77 8.03 -52.49 -0.42 2.35 16 9 C 0.09 2.72 5.50 -17.43 -0.10 2.62 16 10 N -0.88 -27.44 13.97 55.49 0.78 -26.66 16 11 Si 0.86 22.15 27.74 -169.99 -4.72 17.44 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.24 -6.00 6.74 56.52 0.38 -5.61 16 15 C 0.10 1.01 2.39 -68.87 -0.16 0.84 16 16 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 17 C 0.07 0.59 5.03 37.16 0.19 0.78 16 18 O -0.35 -3.78 9.78 -35.23 -0.34 -4.13 16 19 C 0.06 0.49 4.29 -25.92 -0.11 0.37 16 20 C -0.16 -1.13 7.93 -25.83 -0.20 -1.33 16 21 C -0.14 -0.90 8.09 -25.83 -0.21 -1.11 16 22 C -0.13 -1.06 7.92 -25.92 -0.21 -1.27 16 23 C 0.49 5.83 6.79 36.01 0.24 6.07 16 24 O -0.48 -7.64 14.64 -18.75 -0.27 -7.92 16 25 O -0.52 -4.53 13.35 -39.24 -0.52 -5.05 16 26 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 0.94 6.30 -51.93 -0.33 0.61 16 28 H 0.07 0.60 6.13 -51.93 -0.32 0.28 16 29 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 30 H 0.10 1.59 5.21 -51.93 -0.27 1.32 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.06 1.04 6.47 -51.93 -0.34 0.70 16 33 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 34 H 0.07 1.47 8.14 -51.92 -0.42 1.04 16 35 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.45 6.07 -51.93 -0.31 0.14 16 38 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.41 2.07 9.10 45.56 0.41 2.49 16 LS Contribution 375.81 15.07 5.66 5.66 Total: -1.00 -35.54 375.81 -8.83 -44.37 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.63 Total: 0.86 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 0.34 Total: -9.50 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: -0.26 Total: -34.17 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -1.14 Total: -17.09 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.72 Total: 17.44 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -2.09 Total: -7.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.54 -8.83 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598482819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.655 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds