Wall clock time and date at job start Tue Mar 31 2020 11:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 110.99806 * 2 1 4 4 C 1.53006 * 109.47314 * 293.95393 * 3 2 1 5 5 C 1.52999 * 109.47355 * 180.02562 * 4 3 2 6 6 S 1.80993 * 109.47316 * 180.02562 * 5 4 3 7 7 C 1.76194 * 100.00132 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00350 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99953 * 180.02562 * 7 6 5 10 10 N 1.31629 * 120.00103 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00188 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47324 * 89.99934 * 11 9 7 13 13 H 1.48494 * 109.47120 * 210.00144 * 11 9 7 14 14 H 1.48501 * 109.46992 * 330.00142 * 11 9 7 15 15 C 1.46892 * 111.00015 * 123.95156 * 2 1 3 16 16 H 1.09000 * 109.47653 * 296.05146 * 15 2 1 17 17 C 1.52998 * 109.47024 * 56.05091 * 15 2 1 18 18 O 1.42900 * 109.47570 * 64.99671 * 17 15 2 19 19 C 1.42899 * 114.00232 * 179.97438 * 18 17 15 20 20 C 1.53777 * 113.61737 * 249.13602 * 19 18 17 21 21 C 1.53947 * 87.02130 * 220.05029 * 20 19 18 22 22 C 1.53781 * 87.11366 * 25.36292 * 21 20 19 23 23 C 1.50706 * 109.47226 * 176.04856 * 15 2 1 24 24 O 1.20825 * 119.99859 * 359.97438 * 23 15 2 25 25 O 1.34224 * 120.00295 * 180.02562 * 23 15 2 26 26 H 1.08999 * 109.47273 * 296.04690 * 1 2 3 27 27 H 1.09004 * 109.47592 * 56.04475 * 1 2 3 28 28 H 1.09004 * 109.47407 * 176.04691 * 1 2 3 29 29 H 1.09004 * 109.47618 * 53.95223 * 3 2 1 30 30 H 1.08997 * 109.47303 * 173.95590 * 3 2 1 31 31 H 1.08995 * 109.46730 * 300.00124 * 4 3 2 32 32 H 1.08997 * 109.46775 * 59.99873 * 4 3 2 33 33 H 1.08999 * 109.46856 * 300.00094 * 5 4 3 34 34 H 1.08998 * 109.47094 * 59.99668 * 5 4 3 35 35 H 0.96993 * 120.00255 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.47333 * 184.99667 * 17 15 2 37 37 H 1.09004 * 109.46935 * 304.99360 * 17 15 2 38 38 H 1.09003 * 112.84752 * 20.33566 * 19 18 17 39 39 H 1.09004 * 113.61475 * 334.57247 * 20 19 18 40 40 H 1.09007 * 113.61408 * 105.46711 * 20 19 18 41 41 H 1.09003 * 113.53397 * 270.81165 * 21 20 19 42 42 H 1.09000 * 113.66743 * 139.93274 * 21 20 19 43 43 H 1.08997 * 113.61681 * 220.08976 * 22 21 20 44 44 H 1.08999 * 113.69013 * 89.19723 * 22 21 20 45 45 H 0.96700 * 117.00196 * 179.97438 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1802 3.4857 -1.3186 6 16 1.7489 4.2975 -2.8777 7 6 2.4830 5.8773 -2.6134 8 1 3.0027 6.0835 -1.6894 9 6 2.3925 6.8571 -3.5924 10 7 2.9405 8.0375 -3.3948 11 14 1.4919 6.5012 -5.1897 12 1 0.0600 6.8665 -5.0428 13 1 2.0961 7.2987 -6.2870 14 1 1.6036 5.0553 -5.5093 15 6 1.9954 -0.7659 1.1375 16 1 1.7043 -0.2799 2.0688 17 6 1.4261 -2.1856 1.1037 18 8 1.9030 -2.8625 -0.0610 19 6 1.4282 -4.2042 -0.1888 20 6 2.5228 -5.2664 0.0068 21 6 1.8685 -6.0386 -1.1532 22 6 1.3278 -4.6859 -1.6459 23 6 3.4988 -0.8253 1.0505 24 8 4.0727 -0.2855 0.1346 25 8 4.2001 -1.4789 1.9900 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0708 29 1 1.5610 1.9274 0.8309 30 1 3.0796 1.3445 0.1082 31 1 2.0657 1.5016 -2.1491 32 1 0.5471 2.0845 -1.4265 33 1 1.7462 4.0418 -0.4876 34 1 3.2644 3.4583 -1.2105 35 1 2.8770 8.7223 -4.0787 36 1 1.7454 -2.7265 1.9945 37 1 0.3373 -2.1399 1.0771 38 1 0.5278 -4.3921 0.3962 39 1 3.5264 -4.9061 -0.2196 40 1 2.4637 -5.7830 0.9649 41 1 1.0891 -6.7293 -0.8314 42 1 2.5862 -6.4961 -1.8342 43 1 0.3053 -4.7345 -2.0202 44 1 2.0029 -4.1656 -2.3252 45 1 5.1620 -1.4900 1.8914 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598482819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:27 Heat of formation + Delta-G solvation = -133.419386 kcal Electronic energy + Delta-G solvation = -24677.774217 eV Core-core repulsion = 21014.679855 eV Total energy + Delta-G solvation = -3663.094362 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62082 -40.08004 -38.84365 -37.12063 -36.68736 -34.70449 -34.43637 -31.00075 -28.43254 -27.93460 -26.54764 -26.12345 -25.24197 -24.55633 -22.21331 -21.32631 -20.52898 -19.62945 -19.14112 -18.27536 -17.70026 -17.20982 -17.11739 -16.98582 -16.34167 -16.15916 -15.96635 -15.61374 -15.18727 -14.94037 -14.92207 -14.83727 -13.94322 -13.70113 -13.48494 -13.46136 -13.42547 -13.34771 -13.03029 -13.00051 -12.79257 -12.67921 -12.47998 -12.31718 -12.09547 -11.95142 -11.79635 -11.56409 -11.49622 -11.25095 -11.17451 -11.04144 -10.58461 -10.28683 -9.33022 -9.00590 -8.53098 -6.24535 1.10930 1.24392 1.30875 1.47744 1.71400 1.93692 2.24465 2.66327 2.73548 2.79959 2.84628 3.67651 3.72686 3.83985 3.93041 3.97224 4.00373 4.10992 4.13770 4.23970 4.25574 4.37765 4.43739 4.51052 4.54947 4.58324 4.66876 4.71214 4.82142 4.85049 4.88456 5.05899 5.06899 5.09623 5.18029 5.26323 5.27209 5.43614 5.67587 5.68595 5.89624 6.02112 6.08416 6.40670 6.90658 7.03119 8.60195 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.002567 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.895636 B =10905.640997 C =11557.129559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.533 5.533 3 C 0.055 3.945 4 C -0.077 4.077 5 C -0.067 4.067 6 S -0.217 6.217 7 C -0.523 4.523 8 H 0.049 0.951 9 C 0.037 3.963 10 N -0.922 5.922 11 Si 0.927 3.073 12 H -0.258 1.258 13 H -0.262 1.262 14 H -0.231 1.231 15 C 0.093 3.907 16 H 0.116 0.884 17 C 0.071 3.929 18 O -0.386 6.386 19 C 0.058 3.942 20 C -0.157 4.157 21 C -0.134 4.134 22 C -0.144 4.144 23 C 0.487 3.513 24 O -0.531 6.531 25 O -0.510 6.510 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.277 0.723 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 -31.006 13.261 34.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.259 5.259 3 C -0.074 4.074 4 C -0.116 4.116 5 C -0.216 4.216 6 S 0.011 5.989 7 C -0.671 4.671 8 H 0.067 0.933 9 C -0.168 4.168 10 N -0.560 5.560 11 Si 0.748 3.252 12 H -0.182 1.182 13 H -0.186 1.186 14 H -0.155 1.155 15 C -0.016 4.016 16 H 0.133 0.867 17 C -0.006 4.006 18 O -0.305 6.305 19 C 0.000 4.000 20 C -0.195 4.195 21 C -0.172 4.172 22 C -0.181 4.181 23 C 0.329 3.671 24 O -0.419 6.419 25 O -0.323 6.323 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -6.965 -31.205 11.540 33.992 hybrid contribution 1.300 1.654 1.137 2.392 sum -5.665 -29.551 12.677 32.650 Atomic orbital electron populations 1.22608 0.84602 1.03550 1.01945 1.61574 1.09490 1.13281 1.41587 1.22274 1.01465 0.87382 0.96300 1.21118 1.01200 0.91081 0.98196 1.23042 1.02363 0.98770 0.97474 1.83813 1.75056 1.13459 1.26572 1.22339 1.40540 0.97818 1.06362 0.93296 1.25805 0.95238 0.93711 1.02027 1.70036 1.44503 1.04878 1.36627 0.85688 0.79477 0.81427 0.78600 1.18236 1.18620 1.15485 1.21448 0.87236 0.97113 0.95825 0.86657 1.22699 0.99559 0.88712 0.89588 1.88110 1.71893 1.26558 1.43937 1.23957 0.97444 0.80712 0.97865 1.23468 0.98860 0.97308 0.99878 1.22699 1.00816 0.95781 0.97870 1.23190 1.02127 0.96615 0.96186 1.23345 0.91593 0.73750 0.78364 1.90714 1.72457 1.44026 1.34732 1.84418 1.27597 1.69894 1.50402 0.93590 0.91026 0.89329 0.93805 0.90342 0.92172 0.90464 0.91330 0.92584 0.91348 0.89771 0.89330 0.87324 0.91273 0.89941 0.88171 0.90953 0.90195 0.91462 0.71275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.92 127.69 1.14 1.48 16 2 N -0.53 -12.51 4.38 -901.47 -3.95 -16.45 16 3 C 0.05 1.55 4.56 86.31 0.39 1.94 16 4 C -0.08 -2.60 5.15 30.60 0.16 -2.44 16 5 C -0.07 -2.83 5.67 71.98 0.41 -2.42 16 6 S -0.22 -11.08 19.41 -56.49 -1.10 -12.18 16 7 C -0.52 -32.19 10.04 67.96 0.68 -31.51 16 8 H 0.05 3.27 8.03 -2.91 -0.02 3.25 16 9 C 0.04 2.23 5.50 84.86 0.47 2.70 16 10 N -0.92 -58.30 13.97 21.65 0.30 -57.99 16 11 Si 0.93 45.59 27.74 68.60 1.90 47.49 16 12 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 14 H -0.23 -11.09 6.74 99.48 0.67 -10.42 16 15 C 0.09 1.71 2.39 44.17 0.11 1.81 16 16 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 17 C 0.07 0.97 5.03 71.98 0.36 1.33 16 18 O -0.39 -7.60 9.78 -148.98 -1.46 -9.06 16 19 C 0.06 0.80 4.29 31.12 0.13 0.93 16 20 C -0.16 -2.00 7.93 31.18 0.25 -1.76 16 21 C -0.13 -1.47 8.09 31.18 0.25 -1.22 16 22 C -0.14 -2.12 7.92 31.12 0.25 -1.87 16 23 C 0.49 11.23 6.79 71.24 0.48 11.71 16 24 O -0.53 -17.19 14.64 21.97 0.32 -16.87 16 25 O -0.51 -8.08 13.35 -51.35 -0.69 -8.77 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 1.44 6.30 -2.39 -0.02 1.42 16 28 H 0.09 1.22 6.13 -2.39 -0.01 1.20 16 29 H 0.04 1.10 8.12 -2.39 -0.02 1.08 16 30 H 0.08 2.58 5.21 -2.39 -0.01 2.57 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.08 2.40 6.47 -2.39 -0.02 2.39 16 33 H 0.07 2.80 8.14 -2.40 -0.02 2.79 16 34 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 35 H 0.28 16.08 8.31 -92.71 -0.77 15.31 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.82 6.07 -2.38 -0.01 0.81 16 38 H 0.11 0.94 7.88 -2.39 -0.02 0.93 16 39 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.43 3.86 9.10 -74.06 -0.67 3.19 16 Total: -1.00 -78.94 375.81 0.69 -78.25 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.27 Total: 14.87 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 5.08 Total: -19.29 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -3.64 Total: -74.45 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.82 Total: -34.69 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Atomic # 16 Polarization: -11.08 SS G_CDS: -1.10 Total: -12.18 kcal Total: -78.94 0.69 -78.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598482819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.169 kcal (2) G-P(sol) polarization free energy of solvation -78.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds