Wall clock time and date at job start Tue Mar 31 2020 11:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00036 * 2 1 4 4 C 1.52998 * 109.47433 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.45697 * 295.20129 * 4 3 2 6 6 O 1.20828 * 120.00266 * 25.01705 * 5 4 3 7 7 O 1.34231 * 120.00140 * 205.02719 * 5 4 3 8 8 C 1.53043 * 109.45974 * 55.16942 * 4 3 2 9 9 C 1.53119 * 109.27813 * 60.83682 * 8 4 3 10 10 C 1.53120 * 109.15924 * 57.65545 * 9 8 4 11 11 C 1.53041 * 109.27891 * 302.34549 * 10 9 8 12 12 N 1.46845 * 109.46838 * 175.22136 * 4 3 2 13 13 C 1.46901 * 110.99714 * 65.82434 * 12 4 3 14 14 C 1.52997 * 109.47136 * 170.20582 * 13 12 4 15 15 C 1.52996 * 109.47292 * 182.27132 * 14 13 12 16 16 S 1.81000 * 109.47451 * 179.97438 * 15 14 13 17 17 C 1.76196 * 100.00312 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00210 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99530 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00016 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46922 * 90.00179 * 21 19 17 23 23 H 1.48504 * 109.46730 * 210.00198 * 21 19 17 24 24 H 1.48499 * 109.47042 * 329.99829 * 21 19 17 25 25 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47439 * 299.99654 * 1 2 3 27 27 H 1.09004 * 109.47306 * 59.99654 * 1 2 3 28 28 H 1.09000 * 109.46695 * 60.00450 * 3 2 1 29 29 H 1.08996 * 109.47412 * 300.00610 * 3 2 1 30 30 H 0.96702 * 117.00066 * 179.97438 * 7 5 4 31 31 H 1.09006 * 109.50175 * 300.89768 * 8 4 3 32 32 H 1.09003 * 109.53692 * 180.79653 * 8 4 3 33 33 H 1.09005 * 109.52113 * 297.75047 * 9 8 4 34 34 H 1.08996 * 109.57215 * 177.59118 * 9 8 4 35 35 H 1.08999 * 109.50341 * 182.40837 * 10 9 8 36 36 H 1.08993 * 109.53641 * 62.30642 * 10 9 8 37 37 H 1.09000 * 109.45934 * 299.16737 * 11 10 9 38 38 H 1.08995 * 109.45288 * 179.19277 * 11 10 9 39 39 H 1.09000 * 109.46903 * 50.20453 * 13 12 4 40 40 H 1.09005 * 109.47166 * 290.20357 * 13 12 4 41 41 H 1.09007 * 109.46924 * 302.26461 * 14 13 12 42 42 H 1.09000 * 109.47512 * 62.26724 * 14 13 12 43 43 H 1.08999 * 109.47219 * 299.99600 * 15 14 13 44 44 H 1.08999 * 109.47520 * 59.99804 * 15 14 13 45 45 H 0.97005 * 119.99513 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9875 0.5422 1.2866 6 8 3.2353 -0.1780 1.8993 7 8 5.2259 0.7702 1.7516 8 6 3.9791 0.3227 -1.1835 9 6 3.5352 0.9893 -2.4885 10 6 4.1310 2.3980 -2.5612 11 6 3.6829 3.1999 -1.3371 12 7 4.1322 2.5215 -0.1147 13 6 3.8407 3.3325 1.0749 14 6 4.6717 4.6164 1.0330 15 6 4.4106 5.4345 2.2993 16 16 5.3943 6.9531 2.2501 17 6 4.9126 7.6795 3.7813 18 1 4.2034 7.1735 4.4196 19 6 5.4445 8.9021 4.1673 20 7 6.3085 9.5190 3.3891 21 14 4.9344 9.6718 5.7911 22 1 5.8517 9.2144 6.8655 23 1 5.0007 11.1512 5.6799 24 1 3.5451 9.2618 6.1184 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 5.4703 0.3363 2.5806 31 1 3.5235 -0.6645 -1.1059 32 1 5.0646 0.2241 -1.1761 33 1 2.4472 1.0522 -2.5137 34 1 3.8859 0.4013 -3.3366 35 1 3.7838 2.8936 -3.4678 36 1 5.2189 2.3333 -2.5755 37 1 2.5956 3.2764 -1.3313 38 1 4.1171 4.1987 -1.3787 39 1 4.0923 2.7659 1.9715 40 1 2.7807 3.5862 1.0909 41 1 5.7302 4.3624 0.9764 42 1 4.3913 5.2024 0.1577 43 1 3.3522 5.6886 2.3560 44 1 4.6911 4.8487 3.1746 45 1 6.6800 10.3736 3.6587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599187300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:50 Heat of formation + Delta-G solvation = -139.795199 kcal Electronic energy + Delta-G solvation = -25682.808681 eV Core-core repulsion = 22019.437843 eV Total energy + Delta-G solvation = -3663.370838 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.32816 -39.09485 -37.56196 -36.06410 -34.98396 -32.47611 -32.37766 -31.43618 -27.94394 -26.47360 -25.63534 -25.36857 -24.67085 -23.55276 -21.24432 -20.78532 -19.18173 -18.22281 -17.49301 -17.24053 -16.70899 -15.91366 -15.81611 -15.75034 -15.11310 -14.83450 -14.80421 -14.28148 -14.20782 -14.09932 -13.53948 -13.37259 -13.25581 -13.03240 -12.78747 -12.43585 -12.17195 -11.82643 -11.66166 -11.55798 -11.44973 -11.35984 -11.16867 -11.06494 -10.88586 -10.81831 -10.76505 -10.57793 -10.38104 -10.20111 -9.79284 -9.54462 -9.05759 -8.54242 -8.30236 -6.52411 -6.22847 -3.92829 2.08651 2.87173 3.19657 3.21837 3.28390 3.33485 3.52557 3.69143 4.22524 4.30474 4.56285 4.65113 4.77223 4.85322 4.93435 4.98652 5.08360 5.13029 5.14722 5.19765 5.21709 5.29585 5.33609 5.41141 5.43491 5.50577 5.61239 5.65874 5.68473 5.72849 5.84424 5.89432 5.91534 6.07042 6.14307 6.30339 6.43519 6.56285 6.65529 6.77417 6.88168 6.90857 7.60625 7.89571 8.36664 9.23586 10.85307 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.002934 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.668175 B = 9539.744908 C = 9977.818245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.041 3.959 4 C 0.131 3.869 5 C 0.491 3.509 6 O -0.500 6.500 7 O -0.497 6.497 8 C -0.100 4.100 9 C -0.118 4.118 10 C -0.120 4.120 11 C 0.043 3.957 12 N -0.505 5.505 13 C 0.050 3.950 14 C -0.089 4.089 15 C -0.113 4.113 16 S -0.129 6.129 17 C -0.517 4.517 18 H 0.072 0.928 19 C 0.071 3.929 20 N -0.870 5.870 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.405 0.595 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 -19.153 -11.656 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.038 4.038 4 C 0.039 3.961 5 C 0.332 3.668 6 O -0.386 6.386 7 O -0.307 6.307 8 C -0.137 4.137 9 C -0.155 4.155 10 C -0.157 4.157 11 C -0.084 4.084 12 N -0.231 5.231 13 C -0.078 4.078 14 C -0.128 4.128 15 C -0.263 4.263 16 S 0.099 5.901 17 C -0.665 4.665 18 H 0.090 0.910 19 C -0.138 4.138 20 N -0.505 5.505 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.263 0.737 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.563 -18.844 -12.687 23.646 hybrid contribution -2.164 0.198 2.739 3.496 sum -8.727 -18.646 -9.948 22.865 Atomic orbital electron populations 1.22731 0.81197 1.02763 0.99775 1.87962 1.19363 1.25965 1.95268 1.23093 0.92795 0.86596 1.01269 1.20878 0.91256 0.91983 0.91981 1.22964 0.79457 0.78513 0.85903 1.90756 1.54818 1.35582 1.57433 1.84691 1.32861 1.69417 1.43755 1.21543 1.02370 0.98063 0.91770 1.21584 1.00637 0.96473 0.96842 1.21648 1.02196 0.94991 0.96894 1.22351 0.98186 0.98961 0.88923 1.62329 1.56926 1.00446 1.03401 1.22391 0.98090 0.95313 0.92015 1.21246 1.01006 0.92983 0.97562 1.23232 1.02780 1.01149 0.99114 1.84611 1.58133 1.16916 1.30401 1.22694 1.30746 1.08037 1.05024 0.91027 1.25008 0.94713 0.96078 0.97962 1.70024 1.28058 1.15855 1.36579 0.86175 0.79006 0.78207 0.82205 1.20251 1.20757 1.19726 0.89518 0.94127 0.94322 0.92872 0.91227 0.73694 0.90047 0.90003 0.91936 0.91044 0.91108 0.90415 0.94361 0.88771 0.90579 0.94713 0.90227 0.91503 0.92448 0.92145 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.37 -4.35 8.57 -54.63 -0.47 -4.82 16 3 C 0.04 0.46 3.42 37.16 0.13 0.59 16 4 C 0.13 1.50 0.48 -132.76 -0.06 1.44 16 5 C 0.49 6.38 5.69 36.00 0.20 6.58 16 6 O -0.50 -7.69 16.06 -25.32 -0.41 -8.10 16 7 O -0.50 -5.66 12.13 -39.26 -0.48 -6.14 16 8 C -0.10 -0.98 4.69 -26.65 -0.13 -1.10 16 9 C -0.12 -0.94 5.70 -26.61 -0.15 -1.09 16 10 C -0.12 -0.99 6.09 -26.65 -0.16 -1.15 16 11 C 0.04 0.43 4.99 -3.83 -0.02 0.41 16 12 N -0.51 -5.98 4.24 -220.35 -0.93 -6.91 16 13 C 0.05 0.69 4.10 -3.82 -0.02 0.67 16 14 C -0.09 -1.43 5.08 -26.73 -0.14 -1.57 16 15 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 16 S -0.13 -3.35 21.44 -107.50 -2.30 -5.66 16 17 C -0.52 -14.83 9.50 30.94 0.29 -14.54 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 20 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 21 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.65 7.01 -51.93 -0.36 0.29 16 29 H 0.07 0.68 4.80 -51.93 -0.25 0.43 16 30 H 0.41 2.96 9.10 45.56 0.41 3.37 16 31 H 0.08 0.83 7.53 -51.93 -0.39 0.44 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.50 6.67 -51.93 -0.35 0.15 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.37 6.09 -51.93 -0.32 0.05 16 38 H 0.09 1.01 6.25 -51.93 -0.32 0.69 16 39 H 0.08 1.09 5.93 -51.93 -0.31 0.78 16 40 H 0.03 0.46 7.06 -51.93 -0.37 0.09 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.07 1.04 6.53 -51.93 -0.34 0.70 16 43 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 44 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -33.80 362.97 -8.59 -42.39 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.36 Total: 0.93 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 1.18 Total: -8.49 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: -0.20 Total: -32.12 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.35 Total: -19.06 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -2.30 Total: -5.66 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.80 -8.59 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599187300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.402 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds