Wall clock time and date at job start Tue Mar 31 2020 11:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00036 * 2 1 4 4 C 1.52998 * 109.47433 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.45697 * 295.20129 * 4 3 2 6 6 O 1.20828 * 120.00266 * 25.01705 * 5 4 3 7 7 O 1.34231 * 120.00140 * 205.02719 * 5 4 3 8 8 C 1.53043 * 109.45974 * 55.16942 * 4 3 2 9 9 C 1.53119 * 109.27813 * 60.83682 * 8 4 3 10 10 C 1.53120 * 109.15924 * 57.65545 * 9 8 4 11 11 C 1.53041 * 109.27891 * 302.34549 * 10 9 8 12 12 N 1.46845 * 109.46838 * 175.22136 * 4 3 2 13 13 C 1.46901 * 110.99714 * 65.82434 * 12 4 3 14 14 C 1.52997 * 109.47136 * 170.20582 * 13 12 4 15 15 C 1.52996 * 109.47292 * 182.27132 * 14 13 12 16 16 S 1.81000 * 109.47451 * 179.97438 * 15 14 13 17 17 C 1.76196 * 100.00312 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00210 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99530 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00016 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46922 * 90.00179 * 21 19 17 23 23 H 1.48504 * 109.46730 * 210.00198 * 21 19 17 24 24 H 1.48499 * 109.47042 * 329.99829 * 21 19 17 25 25 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47439 * 299.99654 * 1 2 3 27 27 H 1.09004 * 109.47306 * 59.99654 * 1 2 3 28 28 H 1.09000 * 109.46695 * 60.00450 * 3 2 1 29 29 H 1.08996 * 109.47412 * 300.00610 * 3 2 1 30 30 H 0.96702 * 117.00066 * 179.97438 * 7 5 4 31 31 H 1.09006 * 109.50175 * 300.89768 * 8 4 3 32 32 H 1.09003 * 109.53692 * 180.79653 * 8 4 3 33 33 H 1.09005 * 109.52113 * 297.75047 * 9 8 4 34 34 H 1.08996 * 109.57215 * 177.59118 * 9 8 4 35 35 H 1.08999 * 109.50341 * 182.40837 * 10 9 8 36 36 H 1.08993 * 109.53641 * 62.30642 * 10 9 8 37 37 H 1.09000 * 109.45934 * 299.16737 * 11 10 9 38 38 H 1.08995 * 109.45288 * 179.19277 * 11 10 9 39 39 H 1.09000 * 109.46903 * 50.20453 * 13 12 4 40 40 H 1.09005 * 109.47166 * 290.20357 * 13 12 4 41 41 H 1.09007 * 109.46924 * 302.26461 * 14 13 12 42 42 H 1.09000 * 109.47512 * 62.26724 * 14 13 12 43 43 H 1.08999 * 109.47219 * 299.99600 * 15 14 13 44 44 H 1.08999 * 109.47520 * 59.99804 * 15 14 13 45 45 H 0.97005 * 119.99513 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9875 0.5422 1.2866 6 8 3.2353 -0.1780 1.8993 7 8 5.2259 0.7702 1.7516 8 6 3.9791 0.3227 -1.1835 9 6 3.5352 0.9893 -2.4885 10 6 4.1310 2.3980 -2.5612 11 6 3.6829 3.1999 -1.3371 12 7 4.1322 2.5215 -0.1147 13 6 3.8407 3.3325 1.0749 14 6 4.6717 4.6164 1.0330 15 6 4.4106 5.4345 2.2993 16 16 5.3943 6.9531 2.2501 17 6 4.9126 7.6795 3.7813 18 1 4.2034 7.1735 4.4196 19 6 5.4445 8.9021 4.1673 20 7 6.3085 9.5190 3.3891 21 14 4.9344 9.6718 5.7911 22 1 5.8517 9.2144 6.8655 23 1 5.0007 11.1512 5.6799 24 1 3.5451 9.2618 6.1184 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 5.4703 0.3363 2.5806 31 1 3.5235 -0.6645 -1.1059 32 1 5.0646 0.2241 -1.1761 33 1 2.4472 1.0522 -2.5137 34 1 3.8859 0.4013 -3.3366 35 1 3.7838 2.8936 -3.4678 36 1 5.2189 2.3333 -2.5755 37 1 2.5956 3.2764 -1.3313 38 1 4.1171 4.1987 -1.3787 39 1 4.0923 2.7659 1.9715 40 1 2.7807 3.5862 1.0909 41 1 5.7302 4.3624 0.9764 42 1 4.3913 5.2024 0.1577 43 1 3.3522 5.6886 2.3560 44 1 4.6911 4.8487 3.1746 45 1 6.6800 10.3736 3.6587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599187300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:49 Heat of formation + Delta-G solvation = -162.597599 kcal Electronic energy + Delta-G solvation = -25683.797467 eV Core-core repulsion = 22019.437843 eV Total energy + Delta-G solvation = -3664.359624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.25267 -40.03371 -38.40874 -37.04825 -36.04611 -34.60563 -33.35623 -32.45510 -28.75534 -27.92992 -27.26263 -26.31252 -25.56483 -24.63002 -22.14552 -21.97431 -20.00712 -19.59374 -19.10704 -18.24295 -17.55772 -16.89706 -16.88496 -16.82508 -16.63828 -16.07780 -16.00952 -15.77571 -15.16703 -14.96768 -14.72998 -14.48285 -14.32530 -14.03774 -13.74576 -13.50300 -13.37197 -13.20592 -13.10754 -12.92717 -12.58815 -12.51228 -12.37827 -12.35310 -12.24090 -12.03881 -11.83688 -11.59782 -11.45271 -11.22690 -11.16784 -11.12147 -10.60441 -10.31916 -9.46385 -8.65500 -8.37541 -6.13094 1.09314 1.31024 1.38736 1.47821 1.72546 2.00915 2.27361 2.49676 2.75361 2.96666 3.31872 3.48689 3.74217 3.81887 3.95640 4.00014 4.09231 4.15575 4.20803 4.24695 4.33579 4.38075 4.40457 4.48289 4.51020 4.56020 4.69073 4.72422 4.78606 4.80825 4.85455 4.97143 5.06736 5.14504 5.20820 5.25870 5.30048 5.39568 5.48337 5.54221 5.80631 5.92679 6.11576 6.17886 6.99974 7.04897 8.71757 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.002934 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.668175 B = 9539.744908 C = 9977.818245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.387 6.387 3 C 0.044 3.956 4 C 0.129 3.871 5 C 0.490 3.510 6 O -0.530 6.530 7 O -0.500 6.500 8 C -0.096 4.096 9 C -0.112 4.112 10 C -0.114 4.114 11 C 0.037 3.963 12 N -0.508 5.508 13 C 0.061 3.939 14 C -0.075 4.075 15 C -0.090 4.090 16 S -0.187 6.187 17 C -0.541 4.541 18 H 0.070 0.930 19 C 0.017 3.983 20 N -0.906 5.906 21 Si 0.992 3.008 22 H -0.268 1.268 23 H -0.273 1.273 24 H -0.264 1.264 25 H 0.098 0.902 26 H 0.036 0.964 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.421 0.579 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 -19.702 -12.248 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.305 6.305 3 C -0.034 4.034 4 C 0.038 3.962 5 C 0.332 3.668 6 O -0.418 6.418 7 O -0.312 6.312 8 C -0.134 4.134 9 C -0.149 4.149 10 C -0.152 4.152 11 C -0.089 4.089 12 N -0.234 5.234 13 C -0.068 4.068 14 C -0.114 4.114 15 C -0.239 4.239 16 S 0.042 5.958 17 C -0.688 4.688 18 H 0.088 0.912 19 C -0.188 4.188 20 N -0.542 5.542 21 Si 0.814 3.186 22 H -0.193 1.193 23 H -0.198 1.198 24 H -0.189 1.189 25 H 0.117 0.883 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.281 0.719 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.568 -19.403 -13.286 24.703 hybrid contribution -1.841 0.286 2.895 3.442 sum -9.409 -19.116 -10.392 23.706 Atomic orbital electron populations 1.22909 0.79800 1.03852 1.00458 1.87934 1.20974 1.26220 1.95377 1.23070 0.92483 0.86572 1.01319 1.20974 0.91624 0.91678 0.91972 1.23327 0.79389 0.77953 0.86119 1.90738 1.55606 1.37048 1.58415 1.84663 1.32243 1.69463 1.44814 1.21544 1.02175 0.97675 0.91997 1.21575 1.00872 0.96240 0.96260 1.21634 1.01915 0.95038 0.96614 1.22476 0.98761 0.98829 0.88845 1.62275 1.57403 1.00500 1.03230 1.22151 0.97706 0.94105 0.92842 1.21092 1.01001 0.93659 0.95619 1.23155 1.01453 0.98176 1.01152 1.84577 1.60322 1.20736 1.30201 1.23043 1.31074 1.08839 1.05882 0.91156 1.26034 0.94440 0.96448 1.01907 1.70149 1.29080 1.16377 1.38625 0.85045 0.78947 0.77407 0.77194 1.19334 1.19800 1.18851 0.88333 0.94571 0.92461 0.94363 0.89510 0.71875 0.90481 0.90218 0.91490 0.89272 0.89172 0.90941 0.93448 0.89478 0.91411 0.94147 0.91073 0.90863 0.92159 0.92376 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.39 -8.68 8.57 -130.43 -1.12 -9.80 16 3 C 0.04 0.93 3.42 71.98 0.25 1.18 16 4 C 0.13 2.81 0.48 2.80 0.00 2.81 16 5 C 0.49 12.51 5.69 71.23 0.41 12.91 16 6 O -0.53 -16.27 16.06 28.24 0.45 -15.82 16 7 O -0.50 -11.13 12.13 -51.42 -0.62 -11.75 16 8 C -0.10 -1.72 4.69 30.65 0.14 -1.58 16 9 C -0.11 -1.48 5.70 30.67 0.17 -1.31 16 10 C -0.11 -1.60 6.09 30.65 0.19 -1.41 16 11 C 0.04 0.69 4.99 86.33 0.43 1.12 16 12 N -0.51 -11.37 4.24 -851.05 -3.61 -14.98 16 13 C 0.06 1.61 4.10 86.30 0.35 1.96 16 14 C -0.07 -2.36 5.08 30.59 0.16 -2.21 16 15 C -0.09 -3.60 5.67 71.98 0.41 -3.20 16 16 S -0.19 -9.91 21.44 -56.49 -1.21 -11.12 16 17 C -0.54 -31.33 9.50 67.95 0.65 -30.69 16 18 H 0.07 3.95 7.80 -2.91 -0.02 3.92 16 19 C 0.02 0.96 5.49 84.86 0.47 1.42 16 20 N -0.91 -54.58 13.22 21.65 0.29 -54.29 16 21 Si 0.99 44.01 29.55 68.60 2.03 46.03 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.04 0.91 7.01 -2.39 -0.02 0.89 16 29 H 0.09 1.49 4.80 -2.39 -0.01 1.47 16 30 H 0.42 5.97 9.10 -74.06 -0.67 5.29 16 31 H 0.08 1.47 7.53 -2.38 -0.02 1.45 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.07 0.85 6.67 -2.38 -0.02 0.84 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 0.79 6.09 -2.39 -0.01 0.78 16 38 H 0.09 1.73 6.25 -2.39 -0.01 1.72 16 39 H 0.07 1.90 5.93 -2.39 -0.01 1.89 16 40 H 0.04 1.02 7.06 -2.38 -0.02 1.00 16 41 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.07 2.23 6.53 -2.39 -0.02 2.21 16 43 H 0.06 2.37 8.14 -2.40 -0.02 2.35 16 44 H 0.06 2.34 8.14 -2.40 -0.02 2.32 16 45 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -72.86 362.97 1.39 -71.47 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.32 Total: 17.58 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 4.87 Total: -17.32 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -3.32 Total: -69.27 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.29 Total: -37.37 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -9.91 SS G_CDS: -1.21 Total: -11.12 kcal Total: -72.86 1.39 -71.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599187300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.131 kcal (2) G-P(sol) polarization free energy of solvation -72.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds