Wall clock time and date at job start Tue Mar 31 2020 11:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35498 * 117.00314 * 2 1 4 4 C 1.39163 * 119.52838 * 179.97438 * 3 2 1 5 5 C 1.37960 * 119.26327 * 180.02562 * 4 3 2 6 6 C 1.40280 * 118.35829 * 359.97438 * 5 4 3 7 7 C 1.47613 * 120.49548 * 179.97438 * 6 5 4 8 8 O 1.21584 * 120.00558 * 353.36407 * 7 6 5 9 9 N 1.34783 * 119.99609 * 173.35679 * 7 6 5 10 10 C 1.47889 * 134.33902 * 174.59516 * 9 7 6 11 11 C 1.52370 * 85.72976 * 156.54830 * 10 9 7 12 12 C 1.48156 * 134.44870 * 354.48561 * 9 7 6 13 13 C 1.53647 * 116.39887 * 141.28929 * 11 10 9 14 14 C 1.54609 * 102.73549 * 162.91027 * 13 11 10 15 15 N 1.47132 * 107.36268 * 339.24646 * 14 13 11 16 16 C 1.36940 * 125.58438 * 179.07065 * 15 14 13 17 17 H 1.08002 * 119.99620 * 186.06268 * 16 15 14 18 18 C 1.38813 * 120.00145 * 6.05955 * 16 15 14 19 19 N 1.31618 * 119.99627 * 353.12459 * 18 16 15 20 20 Si 1.86800 * 119.99851 * 173.11921 * 18 16 15 21 21 H 1.48499 * 109.46820 * 94.99126 * 20 18 16 22 22 H 1.48501 * 109.46949 * 214.98415 * 20 18 16 23 23 H 1.48502 * 109.47261 * 334.98826 * 20 18 16 24 24 C 1.47723 * 108.82915 * 359.07553 * 15 14 13 25 25 C 1.39522 * 119.00161 * 0.25819 * 6 5 4 26 26 N 1.31664 * 120.63013 * 359.47025 * 25 6 5 27 27 H 1.09004 * 109.47392 * 300.00095 * 1 2 3 28 28 H 1.09003 * 109.47065 * 60.00086 * 1 2 3 29 29 H 1.08996 * 109.47430 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.37043 * 0.04219 * 4 3 2 31 31 H 1.08004 * 120.81835 * 179.97438 * 5 4 3 32 32 H 1.09004 * 113.85102 * 42.31604 * 10 9 7 33 33 H 1.08993 * 113.85632 * 270.77712 * 10 9 7 34 34 H 1.08998 * 113.74164 * 89.28576 * 12 9 7 35 35 H 1.08997 * 114.04578 * 317.66232 * 12 9 7 36 36 H 1.09000 * 110.76262 * 281.22127 * 13 11 10 37 37 H 1.09006 * 110.76164 * 44.60533 * 13 11 10 38 38 H 1.09007 * 109.86480 * 98.69134 * 14 13 11 39 39 H 1.08995 * 109.86888 * 219.80204 * 14 13 11 40 40 H 0.96998 * 119.99524 * 179.97438 * 19 18 16 41 41 H 1.09001 * 110.39509 * 263.65940 * 24 15 14 42 42 H 1.08995 * 110.40276 * 141.24890 * 24 15 14 43 43 H 1.08000 * 119.68322 * 179.72726 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0552 2.5007 0.0011 6 6 3.2525 3.6511 0.0005 7 6 3.8670 4.9933 0.0016 8 8 5.0709 5.1107 0.1247 9 7 3.0934 6.0886 -0.1340 10 6 3.3447 7.5449 -0.0770 11 6 2.0857 7.6801 -0.9245 12 6 1.6540 6.3156 -0.4014 13 6 1.1622 8.8623 -0.5923 14 6 0.2789 8.9706 -1.8567 15 7 0.9964 8.3000 -2.9522 16 6 0.5407 8.1616 -4.2361 17 1 1.0974 7.5674 -4.9456 18 6 -0.6369 8.7849 -4.6256 19 7 -1.3853 9.3953 -3.7314 20 14 -1.1592 8.7576 -6.4189 21 1 -2.0981 7.6293 -6.6438 22 1 -1.8326 10.0370 -6.7579 23 1 0.0379 8.5847 -7.2806 24 6 2.2889 7.8004 -2.4403 25 6 1.8647 3.5077 0.0049 26 7 1.3139 2.3118 -0.0009 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0210 0.3617 0.0003 31 1 5.1325 2.5775 0.0019 32 1 4.2558 7.8554 -0.5884 33 1 3.2509 7.9696 0.9224 34 1 1.0423 6.3624 0.4996 35 1 1.2360 5.6621 -1.1670 36 1 0.5547 8.6432 0.2857 37 1 1.7402 9.7748 -0.4457 38 1 -0.6776 8.4773 -1.6836 39 1 0.1172 10.0190 -2.1069 40 1 -2.2079 9.8312 -4.0036 41 1 3.0854 8.5108 -2.6616 42 1 2.5173 6.8258 -2.8716 43 1 1.2362 4.3860 0.0090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678333978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:43 Heat of formation + Delta-G solvation = 44.042358 kcal Electronic energy + Delta-G solvation = -26443.053578 eV Core-core repulsion = 22684.503334 eV Total energy + Delta-G solvation = -3758.550244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16441 -40.35872 -38.59835 -37.60498 -35.65917 -32.76294 -32.39059 -31.37965 -29.61283 -28.45992 -27.53868 -26.42094 -25.88633 -24.31887 -23.64566 -22.94274 -20.37160 -19.80672 -18.88075 -18.33404 -17.62827 -17.08485 -16.82579 -16.30741 -15.81475 -15.43268 -15.02103 -14.74370 -14.48046 -14.32389 -13.99014 -13.85268 -13.65319 -13.31186 -13.21248 -12.80230 -12.53673 -12.26983 -12.10888 -11.92185 -11.85547 -11.43610 -11.12745 -10.98412 -10.78831 -10.50404 -10.40695 -10.20743 -10.12559 -9.96599 -9.81649 -9.71575 -9.56284 -8.85538 -8.60643 -8.57525 -6.87270 -5.76408 -3.08700 0.55053 0.96629 2.74153 2.79937 2.81765 3.37967 3.44408 3.46007 3.66809 3.95655 4.30646 4.46217 4.57270 4.68403 4.73819 4.84104 4.93936 5.04507 5.08814 5.11806 5.33200 5.36321 5.40939 5.44963 5.53012 5.56101 5.67411 5.68709 5.74121 5.75311 6.00401 6.07727 6.10580 6.17925 6.42521 6.46456 6.63164 6.68451 6.88736 7.50430 7.50748 7.58042 7.71327 7.78509 8.14940 8.21271 9.18120 9.77953 10.43539 11.35618 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.003623 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.120600 B = 7726.101525 C = 9109.785323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.305 6.305 3 C 0.338 3.662 4 C -0.200 4.200 5 C 0.015 3.985 6 C -0.220 4.220 7 C 0.589 3.411 8 O -0.546 6.546 9 N -0.637 5.637 10 C 0.125 3.875 11 C -0.103 4.103 12 C 0.109 3.891 13 C -0.131 4.131 14 C 0.177 3.823 15 N -0.605 5.605 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.162 3.838 25 C 0.171 3.829 26 N -0.542 5.542 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.252 0.748 41 H 0.027 0.973 42 H 0.039 0.961 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.373 -12.892 11.392 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.212 6.212 3 C 0.160 3.840 4 C -0.220 4.220 5 C -0.011 4.011 6 C -0.226 4.226 7 C 0.379 3.621 8 O -0.426 6.426 9 N -0.371 5.371 10 C 0.003 3.997 11 C -0.104 4.104 12 C -0.013 4.013 13 C -0.170 4.170 14 C 0.053 3.947 15 N -0.331 5.331 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.567 5.567 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.036 3.964 25 C 0.014 3.986 26 N -0.265 5.265 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.166 0.834 31 H 0.171 0.829 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.136 -13.304 11.335 18.217 hybrid contribution 0.141 0.135 -0.934 0.954 sum 5.277 -13.170 10.401 17.592 Atomic orbital electron populations 1.22939 0.76706 1.03146 1.02984 1.86200 1.23403 1.24518 1.87034 1.20145 0.89534 0.84860 0.89504 1.21023 0.91833 0.99532 1.09621 1.21515 1.01203 0.89685 0.88656 1.20793 0.95101 0.94621 1.12083 1.17494 0.85681 0.82766 0.76147 1.90761 1.13825 1.86493 1.51478 1.50118 1.10697 1.05992 1.70273 1.23017 0.99143 0.77777 0.99766 1.22460 0.95004 0.94842 0.98122 1.23312 0.81870 0.96168 0.99966 1.22682 0.97917 0.95998 1.00401 1.21229 0.92607 0.97878 0.83005 1.44555 1.15030 1.66018 1.07545 1.19033 1.05322 1.25929 0.85511 0.90523 1.24787 0.97476 1.00045 0.97789 1.69963 1.14649 1.40633 1.31420 0.86157 0.78274 0.77070 0.84623 1.21694 1.21604 1.20635 1.21043 0.90094 0.97196 0.88111 1.23326 0.92135 0.94371 0.88766 1.67406 1.40455 0.98605 1.20024 0.92001 0.91812 0.88463 0.83410 0.82857 0.89766 0.89489 0.89080 0.88908 0.91645 0.91545 0.93778 0.93486 0.93746 0.95550 0.94266 0.80852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.37 101.05 1.05 1.37 16 2 O -0.31 -3.37 10.46 -18.19 -0.19 -3.56 16 3 C 0.34 4.12 7.49 -16.96 -0.13 4.00 16 4 C -0.20 -2.14 10.02 -39.34 -0.39 -2.54 16 5 C 0.02 0.18 9.70 -38.92 -0.38 -0.20 16 6 C -0.22 -2.97 5.89 -104.83 -0.62 -3.58 16 7 C 0.59 9.08 7.98 -12.43 -0.10 8.98 16 8 O -0.55 -9.89 17.16 5.29 0.09 -9.80 16 9 N -0.64 -9.06 3.62 -186.72 -0.68 -9.73 16 10 C 0.13 1.67 8.21 -3.60 -0.03 1.64 16 11 C -0.10 -1.57 0.99 -154.81 -0.15 -1.72 16 12 C 0.11 1.46 5.50 -3.45 -0.02 1.45 16 13 C -0.13 -2.10 6.36 -25.55 -0.16 -2.26 16 14 C 0.18 3.96 5.40 -2.85 -0.02 3.94 16 15 N -0.60 -14.58 3.41 -170.49 -0.58 -15.16 16 16 C -0.23 -6.20 10.26 -15.06 -0.15 -6.36 16 17 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 18 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 19 N -0.92 -26.04 10.35 55.49 0.57 -25.46 16 20 Si 0.91 21.66 29.56 -169.99 -5.02 16.64 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.16 3.16 6.63 -3.16 -0.02 3.14 16 25 C 0.17 2.21 10.28 -17.15 -0.18 2.03 16 26 N -0.54 -7.10 9.18 -12.97 -0.12 -7.22 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.15 1.62 7.75 -52.48 -0.41 1.21 16 32 H 0.08 1.16 8.12 -51.93 -0.42 0.73 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.01 7.93 -51.93 -0.41 0.60 16 35 H 0.09 1.34 6.98 -51.93 -0.36 0.98 16 36 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.04 1.08 7.55 -51.93 -0.39 0.69 16 39 H 0.05 1.19 7.36 -51.93 -0.38 0.80 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 43 H 0.17 2.07 4.10 -52.49 -0.22 1.85 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -32.28 354.44 -7.90 -40.19 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.93 Total: -0.87 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -1.39 Total: 9.65 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.80 Total: -57.58 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.10 Total: -13.36 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.28 -7.90 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678333978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.228 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds