Wall clock time and date at job start Tue Mar 31 2020 11:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35498 * 117.00314 * 2 1 4 4 C 1.39163 * 119.52838 * 179.97438 * 3 2 1 5 5 C 1.37960 * 119.26327 * 180.02562 * 4 3 2 6 6 C 1.40280 * 118.35829 * 359.97438 * 5 4 3 7 7 C 1.47613 * 120.49548 * 179.97438 * 6 5 4 8 8 O 1.21584 * 120.00558 * 353.36407 * 7 6 5 9 9 N 1.34783 * 119.99609 * 173.35679 * 7 6 5 10 10 C 1.47889 * 134.33902 * 174.59516 * 9 7 6 11 11 C 1.52370 * 85.72976 * 156.54830 * 10 9 7 12 12 C 1.48156 * 134.44870 * 354.48561 * 9 7 6 13 13 C 1.53647 * 116.39887 * 141.28929 * 11 10 9 14 14 C 1.54609 * 102.73549 * 162.91027 * 13 11 10 15 15 N 1.47132 * 107.36268 * 339.24646 * 14 13 11 16 16 C 1.36940 * 125.58438 * 179.07065 * 15 14 13 17 17 H 1.08002 * 119.99620 * 186.06268 * 16 15 14 18 18 C 1.38813 * 120.00145 * 6.05955 * 16 15 14 19 19 N 1.31618 * 119.99627 * 353.12459 * 18 16 15 20 20 Si 1.86800 * 119.99851 * 173.11921 * 18 16 15 21 21 H 1.48499 * 109.46820 * 94.99126 * 20 18 16 22 22 H 1.48501 * 109.46949 * 214.98415 * 20 18 16 23 23 H 1.48502 * 109.47261 * 334.98826 * 20 18 16 24 24 C 1.47723 * 108.82915 * 359.07553 * 15 14 13 25 25 C 1.39522 * 119.00161 * 0.25819 * 6 5 4 26 26 N 1.31664 * 120.63013 * 359.47025 * 25 6 5 27 27 H 1.09004 * 109.47392 * 300.00095 * 1 2 3 28 28 H 1.09003 * 109.47065 * 60.00086 * 1 2 3 29 29 H 1.08996 * 109.47430 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.37043 * 0.04219 * 4 3 2 31 31 H 1.08004 * 120.81835 * 179.97438 * 5 4 3 32 32 H 1.09004 * 113.85102 * 42.31604 * 10 9 7 33 33 H 1.08993 * 113.85632 * 270.77712 * 10 9 7 34 34 H 1.08998 * 113.74164 * 89.28576 * 12 9 7 35 35 H 1.08997 * 114.04578 * 317.66232 * 12 9 7 36 36 H 1.09000 * 110.76262 * 281.22127 * 13 11 10 37 37 H 1.09006 * 110.76164 * 44.60533 * 13 11 10 38 38 H 1.09007 * 109.86480 * 98.69134 * 14 13 11 39 39 H 1.08995 * 109.86888 * 219.80204 * 14 13 11 40 40 H 0.96998 * 119.99524 * 179.97438 * 19 18 16 41 41 H 1.09001 * 110.39509 * 263.65940 * 24 15 14 42 42 H 1.08995 * 110.40276 * 141.24890 * 24 15 14 43 43 H 1.08000 * 119.68322 * 179.72726 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0552 2.5007 0.0011 6 6 3.2525 3.6511 0.0005 7 6 3.8670 4.9933 0.0016 8 8 5.0709 5.1107 0.1247 9 7 3.0934 6.0886 -0.1340 10 6 3.3447 7.5449 -0.0770 11 6 2.0857 7.6801 -0.9245 12 6 1.6540 6.3156 -0.4014 13 6 1.1622 8.8623 -0.5923 14 6 0.2789 8.9706 -1.8567 15 7 0.9964 8.3000 -2.9522 16 6 0.5407 8.1616 -4.2361 17 1 1.0974 7.5674 -4.9456 18 6 -0.6369 8.7849 -4.6256 19 7 -1.3853 9.3953 -3.7314 20 14 -1.1592 8.7576 -6.4189 21 1 -2.0981 7.6293 -6.6438 22 1 -1.8326 10.0370 -6.7579 23 1 0.0379 8.5847 -7.2806 24 6 2.2889 7.8004 -2.4403 25 6 1.8647 3.5077 0.0049 26 7 1.3139 2.3118 -0.0009 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0210 0.3617 0.0003 31 1 5.1325 2.5775 0.0019 32 1 4.2558 7.8554 -0.5884 33 1 3.2509 7.9696 0.9224 34 1 1.0423 6.3624 0.4996 35 1 1.2360 5.6621 -1.1670 36 1 0.5547 8.6432 0.2857 37 1 1.7402 9.7748 -0.4457 38 1 -0.6776 8.4773 -1.6836 39 1 0.1172 10.0190 -2.1069 40 1 -2.2079 9.8312 -4.0036 41 1 3.0854 8.5108 -2.6616 42 1 2.5173 6.8258 -2.8716 43 1 1.2362 4.3860 0.0090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678333978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:42 Heat of formation + Delta-G solvation = 21.527060 kcal Electronic energy + Delta-G solvation = -26444.029914 eV Core-core repulsion = 22684.503334 eV Total energy + Delta-G solvation = -3759.526580 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.21033 -41.43039 -39.72818 -38.62327 -37.24961 -34.16625 -33.67998 -32.52199 -31.20020 -29.80542 -28.41953 -27.67172 -27.31517 -25.71502 -24.80270 -23.98071 -22.10591 -20.97251 -19.96994 -19.35694 -18.92909 -18.47523 -18.08374 -17.16725 -16.97133 -16.71442 -16.59928 -16.14673 -15.67444 -15.50939 -15.23416 -15.07691 -14.74407 -14.33430 -14.25609 -14.05379 -13.84747 -13.67734 -13.61617 -13.24576 -12.87073 -12.81931 -12.76732 -12.41803 -12.24034 -12.04616 -11.94564 -11.84911 -11.63002 -11.29346 -11.13086 -11.00490 -10.70975 -10.63160 -9.88323 -9.60897 -8.85299 -7.84522 -5.17512 -0.42215 0.06634 1.46451 1.47632 1.56602 1.67469 1.72524 1.97648 2.49944 2.68604 3.03360 3.22329 3.33767 3.45546 3.65573 3.68337 3.76402 3.85922 3.98918 4.12667 4.21002 4.37987 4.41083 4.42068 4.48320 4.54852 4.59615 4.63555 4.71983 4.76200 4.78142 4.84106 4.98438 5.02995 5.12368 5.14692 5.20351 5.25366 5.48604 5.76537 5.84201 6.03487 6.23616 6.55682 6.59172 7.00087 7.14273 7.80306 8.44104 9.25608 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.003623 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.120600 B = 7726.101525 C = 9109.785323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C 0.329 3.671 4 C -0.191 4.191 5 C 0.014 3.986 6 C -0.235 4.235 7 C 0.587 3.413 8 O -0.580 6.580 9 N -0.637 5.637 10 C 0.133 3.867 11 C -0.097 4.097 12 C 0.115 3.885 13 C -0.111 4.111 14 C 0.182 3.818 15 N -0.625 5.625 16 C -0.243 4.243 17 H 0.074 0.926 18 C -0.057 4.057 19 N -0.943 5.943 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.159 3.841 25 C 0.169 3.831 26 N -0.556 5.556 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.127 0.873 30 H 0.176 0.824 31 H 0.163 0.837 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.014 0.986 39 H 0.008 0.992 40 H 0.247 0.753 41 H 0.025 0.975 42 H 0.029 0.971 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.872 -14.109 12.645 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.215 6.215 3 C 0.150 3.850 4 C -0.211 4.211 5 C -0.012 4.012 6 C -0.241 4.241 7 C 0.379 3.621 8 O -0.462 6.462 9 N -0.371 5.371 10 C 0.012 3.988 11 C -0.099 4.099 12 C -0.007 4.007 13 C -0.149 4.149 14 C 0.058 3.942 15 N -0.351 5.351 16 C -0.373 4.373 17 H 0.092 0.908 18 C -0.250 4.250 19 N -0.592 5.592 20 Si 0.798 3.202 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.198 1.198 24 C 0.034 3.966 25 C 0.012 3.988 26 N -0.280 5.280 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.194 0.806 31 H 0.181 0.819 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.032 0.968 39 H 0.026 0.974 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.642 -14.531 12.594 20.040 hybrid contribution -0.025 0.451 -1.365 1.438 sum 5.617 -14.080 11.229 18.865 Atomic orbital electron populations 1.23144 0.75464 1.05030 1.02501 1.86206 1.24651 1.23897 1.86744 1.20462 0.90266 0.85002 0.89278 1.21295 0.91512 1.00191 1.08107 1.21695 1.01682 0.89591 0.88204 1.20763 0.95513 0.94243 1.13592 1.17731 0.85312 0.83499 0.75576 1.90737 1.15115 1.87008 1.53324 1.50137 1.10968 1.06267 1.69690 1.23107 0.97516 0.77310 1.00900 1.22268 0.96548 0.95767 0.95280 1.23410 0.81892 0.94342 1.01012 1.22528 0.97254 0.97051 0.98103 1.21032 0.92916 0.94886 0.85396 1.44826 1.16759 1.66277 1.07275 1.19344 1.05310 1.25497 0.87107 0.90808 1.25515 0.97828 1.00347 1.01344 1.70161 1.14742 1.41500 1.32798 0.85212 0.77885 0.76672 0.80475 1.21435 1.21903 1.19838 1.21134 0.88092 0.96179 0.91218 1.23376 0.92018 0.94635 0.88771 1.67403 1.40984 0.98929 1.20667 0.92062 0.92684 0.85464 0.80646 0.81907 0.90181 0.86029 0.85582 0.90188 0.88316 0.89967 0.96798 0.97359 0.94359 0.95698 0.95291 0.80287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.37 113.37 1.18 1.68 16 2 O -0.31 -6.27 10.46 -87.99 -0.92 -7.19 16 3 C 0.33 7.51 7.49 84.83 0.64 8.14 16 4 C -0.19 -3.72 10.02 22.43 0.22 -3.50 16 5 C 0.01 0.30 9.70 22.70 0.22 0.52 16 6 C -0.24 -6.08 5.89 -20.00 -0.12 -6.20 16 7 C 0.59 17.40 7.98 86.72 0.69 18.09 16 8 O -0.58 -20.49 17.16 -3.98 -0.07 -20.56 16 9 N -0.64 -16.88 3.62 -862.93 -3.12 -20.00 16 10 C 0.13 3.18 8.21 85.90 0.70 3.88 16 11 C -0.10 -2.78 0.99 -52.17 -0.05 -2.84 16 12 C 0.11 2.84 5.50 85.85 0.47 3.32 16 13 C -0.11 -3.30 6.36 31.36 0.20 -3.10 16 14 C 0.18 8.24 5.40 86.81 0.47 8.71 16 15 N -0.62 -30.64 3.41 -693.32 -2.36 -33.00 16 16 C -0.24 -13.43 10.26 84.03 0.86 -12.57 16 17 H 0.07 3.99 7.84 -2.91 -0.02 3.97 16 18 C -0.06 -3.16 5.48 84.86 0.47 -2.70 16 19 N -0.94 -54.96 10.35 21.65 0.22 -54.73 16 20 Si 0.97 45.25 29.56 68.60 2.03 47.28 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 C 0.16 6.19 6.63 86.28 0.57 6.76 16 25 C 0.17 4.18 10.28 85.03 0.87 5.05 16 26 N -0.56 -13.97 9.18 -307.82 -2.82 -16.80 16 27 H 0.06 0.95 8.10 -2.38 -0.02 0.93 16 28 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 29 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.16 3.22 7.75 -2.91 -0.02 3.20 16 32 H 0.08 2.02 8.12 -2.39 -0.02 2.00 16 33 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.13 2.32 7.93 -2.39 -0.02 2.30 16 35 H 0.08 2.24 6.98 -2.39 -0.02 2.22 16 36 H 0.10 2.34 7.99 -2.39 -0.02 2.32 16 37 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.01 0.70 7.55 -2.38 -0.02 0.68 16 39 H 0.01 0.43 7.36 -2.39 -0.02 0.41 16 40 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.03 1.17 8.07 -2.39 -0.02 1.15 16 43 H 0.18 4.03 4.10 -2.91 -0.01 4.02 16 Total: -1.00 -72.03 354.44 1.38 -70.65 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.02 Total: 9.09 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 7.40 Total: 25.27 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -8.09 Total: -124.53 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.99 Total: -27.75 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.03 1.38 -70.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678333978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.180 kcal (2) G-P(sol) polarization free energy of solvation -72.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds