Wall clock time and date at job start Tue Mar 31 2020 11:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36940 * 119.99929 * 2 1 4 4 H 1.07996 * 119.99596 * 203.05083 * 3 2 1 5 5 C 1.38813 * 120.00193 * 23.04296 * 3 2 1 6 6 N 1.31622 * 119.99655 * 12.94097 * 5 3 2 7 7 Si 1.86795 * 119.99942 * 192.94201 * 5 3 2 8 8 H 1.48498 * 109.47239 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47281 * 119.99947 * 7 5 3 10 10 H 1.48501 * 109.46811 * 240.00108 * 7 5 3 11 11 C 1.46498 * 119.99893 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47037 * 89.99662 * 11 2 1 13 13 N 1.46498 * 109.47037 * 179.97438 * 12 11 2 14 14 C 1.34781 * 120.00209 * 179.73019 * 13 12 11 15 15 O 1.21282 * 119.99807 * 0.27117 * 14 13 12 16 16 C 1.50699 * 120.00312 * 180.27644 * 14 13 12 17 17 C 1.50700 * 109.47269 * 179.97438 * 16 14 13 18 18 C 1.38303 * 119.81012 * 89.99535 * 17 16 14 19 19 C 1.38396 * 119.82543 * 179.97438 * 18 17 16 20 20 C 1.37678 * 119.91372 * 0.02562 * 19 18 17 21 21 C 1.38909 * 120.80737 * 359.97438 * 20 19 18 22 22 C 1.37931 * 119.81127 * 269.72793 * 17 16 14 23 23 N 1.39530 * 110.22727 * 179.97438 * 21 20 19 24 24 C 1.34366 * 112.24708 * 0.02562 * 23 21 20 25 25 O 1.21293 * 126.44361 * 180.02562 * 24 23 21 26 26 C 1.51134 * 132.84955 * 179.97438 * 20 19 18 27 27 H 1.09006 * 109.46625 * 275.12743 * 1 2 3 28 28 H 1.09000 * 109.47311 * 35.12269 * 1 2 3 29 29 H 1.08995 * 109.47503 * 155.12932 * 1 2 3 30 30 H 0.97000 * 119.99576 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.46886 * 330.00107 * 11 2 1 32 32 H 1.08992 * 109.46923 * 210.00045 * 11 2 1 33 33 H 1.09004 * 109.46920 * 60.00465 * 12 11 2 34 34 H 1.08992 * 109.47577 * 299.99983 * 12 11 2 35 35 H 0.97000 * 120.00420 * 359.97438 * 13 12 11 36 36 H 1.08998 * 109.46725 * 299.99955 * 16 14 13 37 37 H 1.09003 * 109.47237 * 59.99751 * 16 14 13 38 38 H 1.08002 * 120.08817 * 359.97438 * 18 17 16 39 39 H 1.07998 * 120.04692 * 179.97438 * 19 18 17 40 40 H 1.08003 * 119.93784 * 359.97438 * 22 17 16 41 41 H 0.96995 * 123.87543 * 180.02562 * 23 21 20 42 42 H 1.09005 * 110.50988 * 298.67663 * 26 20 19 43 43 H 1.08999 * 110.51531 * 61.38965 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3402 0.4705 6 7 0.4119 2.2597 1.1460 7 14 2.3158 4.0074 0.1452 8 1 3.5692 3.8265 -0.6304 9 1 1.3715 4.8506 -0.6309 10 1 2.6242 4.6704 1.4376 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7111 -1.4417 13 7 3.1854 -2.9795 -1.4411 14 6 3.5177 -3.5664 -2.6081 15 8 3.2141 -3.0419 -3.6586 16 6 4.2662 -4.8743 -2.6075 17 6 4.5121 -5.3130 -4.0281 18 6 5.6658 -4.9170 -4.6801 19 6 5.8922 -5.3202 -5.9845 20 6 4.9687 -6.1129 -6.6282 21 6 3.8062 -6.5173 -5.9842 22 6 3.5880 -6.1118 -4.6688 23 7 3.0332 -7.3077 -6.8354 24 6 3.6069 -7.4701 -8.0395 25 8 3.1598 -8.1058 -8.9708 26 6 4.9158 -6.7097 -8.0157 27 1 -0.3633 0.0919 1.0236 28 1 -0.3634 0.8405 -0.5912 29 1 -0.3634 -0.9323 -0.4322 30 1 -0.0152 3.0663 1.4744 31 1 1.6084 -2.0281 0.5147 32 1 3.1498 -1.1382 0.5143 33 1 3.0416 -0.9517 -1.9559 34 1 1.5001 -1.8416 -1.9555 35 1 3.4286 -3.3988 -0.6009 36 1 5.2202 -4.7466 -2.0960 37 1 3.6754 -5.6309 -2.0910 38 1 6.3881 -4.2948 -4.1726 39 1 6.7916 -5.0127 -6.4971 40 1 2.6918 -6.4208 -4.1513 41 1 2.1796 -7.6954 -6.5864 42 1 4.9144 -5.9228 -8.7701 43 1 5.7543 -7.3883 -8.1719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690947355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:22 Heat of formation + Delta-G solvation = -16.188320 kcal Electronic energy + Delta-G solvation = -24939.233116 eV Core-core repulsion = 21178.071074 eV Total energy + Delta-G solvation = -3761.162042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72765 -39.75061 -38.57191 -36.35058 -35.92785 -34.17615 -33.19715 -31.47149 -30.60766 -29.93181 -28.25371 -26.27138 -25.83320 -23.28032 -23.08911 -21.84527 -21.16639 -20.71435 -20.01056 -18.08507 -17.07248 -16.97965 -16.61965 -16.32782 -16.16177 -15.59639 -15.41844 -14.86711 -14.69958 -14.42041 -14.08408 -13.74739 -13.72784 -13.42501 -13.28362 -13.00301 -12.73442 -12.67245 -12.38642 -12.21511 -11.96062 -11.28368 -11.20274 -11.06862 -10.92630 -10.89261 -10.62201 -10.55231 -10.37506 -9.97845 -9.96223 -9.75815 -9.01916 -8.75258 -8.59531 -8.31291 -6.82888 -5.77243 -3.25517 0.85346 1.01473 2.12112 2.65061 2.77414 3.23822 3.35977 3.43525 3.45668 3.63514 3.76297 4.06356 4.41506 4.47947 4.49606 4.79149 4.94808 4.97748 4.99715 5.09266 5.14173 5.25023 5.36745 5.47822 5.55752 5.59842 5.77602 5.78310 5.87723 6.05881 6.19203 6.21908 6.32695 6.41706 6.55932 6.61425 6.70320 6.72732 6.85574 7.33308 7.59835 7.67689 7.70203 7.77317 8.33549 8.40839 9.18030 9.80490 10.28405 11.27608 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.002060 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.156083 B =13591.763255 C =13711.131474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.259 4.259 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.725 5.725 14 C 0.507 3.493 15 O -0.535 6.535 16 C -0.105 4.105 17 C -0.026 4.026 18 C -0.121 4.121 19 C -0.065 4.065 20 C -0.146 4.146 21 C 0.139 3.861 22 C -0.121 4.121 23 N -0.659 5.659 24 C 0.529 3.471 25 O -0.510 6.510 26 C -0.114 4.114 27 H 0.033 0.967 28 H 0.042 0.958 29 H -0.001 1.001 30 H 0.253 0.747 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.397 0.603 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.413 0.587 42 H 0.123 0.877 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.904 -20.710 -9.621 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.376 5.376 14 C 0.292 3.708 15 O -0.411 6.411 16 C -0.145 4.145 17 C -0.027 4.027 18 C -0.140 4.140 19 C -0.083 4.083 20 C -0.148 4.148 21 C 0.042 3.958 22 C -0.142 4.142 23 N -0.302 5.302 24 C 0.317 3.683 25 O -0.385 6.385 26 C -0.153 4.153 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.230 0.770 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.251 0.749 42 H 0.141 0.859 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.366 -20.494 -10.915 25.428 hybrid contribution -0.132 0.687 0.495 0.857 sum 10.235 -19.807 -10.419 24.609 Atomic orbital electron populations 1.20840 0.82326 0.95592 0.99623 1.43799 1.01955 1.00352 1.85950 1.19225 0.98359 0.85487 1.35736 0.91287 1.25044 0.97845 0.98665 0.98026 1.70082 1.19394 1.27216 1.38406 0.86166 0.78644 0.84122 0.77502 1.20237 1.21530 1.21672 1.20837 0.96718 0.89160 0.91765 1.22421 0.95586 0.83070 1.02039 1.46100 1.58396 1.25174 1.07956 1.20402 0.79987 0.86169 0.84218 1.90744 1.54135 1.65038 1.31211 1.20733 1.02642 0.96327 0.94846 1.18979 0.93750 0.95226 0.94770 1.20940 0.97756 1.00644 0.94657 1.20204 0.98164 0.95810 0.94142 1.19760 0.96156 1.03182 0.95749 1.18017 0.91717 0.94312 0.91766 1.20147 1.00504 1.01504 0.92038 1.43724 1.23283 1.49440 1.13745 1.20636 0.86703 0.79860 0.81134 1.90821 1.69358 1.41801 1.36472 1.21041 0.97129 1.00900 0.96205 0.94848 0.93937 0.98285 0.93720 0.94134 0.92934 0.91599 0.92338 0.76974 0.87541 0.87846 0.85221 0.85214 0.85674 0.74922 0.85910 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.98 59.85 0.54 4.45 16 2 N -0.60 -14.70 2.92 -181.12 -0.53 -15.23 16 3 C -0.26 -7.00 9.65 -15.06 -0.15 -7.15 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 5 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 6 N -0.91 -26.20 10.71 55.49 0.59 -25.61 16 7 Si 0.91 21.72 29.57 -169.99 -5.03 16.70 16 8 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.14 2.73 5.76 -4.04 -0.02 2.70 16 12 C 0.09 1.65 6.00 -4.04 -0.02 1.63 16 13 N -0.72 -9.29 5.56 -60.30 -0.33 -9.62 16 14 C 0.51 6.65 7.82 -10.98 -0.09 6.56 16 15 O -0.53 -9.60 16.03 5.56 0.09 -9.51 16 16 C -0.11 -0.86 5.82 -29.04 -0.17 -1.02 16 17 C -0.03 -0.25 4.36 -104.71 -0.46 -0.70 16 18 C -0.12 -1.07 9.71 -39.50 -0.38 -1.46 16 19 C -0.06 -0.53 10.04 -39.73 -0.40 -0.92 16 20 C -0.15 -1.27 6.35 -104.37 -0.66 -1.93 16 21 C 0.14 1.31 7.11 -83.69 -0.60 0.71 16 22 C -0.12 -1.14 9.71 -39.27 -0.38 -1.52 16 23 N -0.66 -5.81 5.88 -9.69 -0.06 -5.87 16 24 C 0.53 5.30 8.71 -10.83 -0.09 5.21 16 25 O -0.51 -6.80 18.03 5.55 0.10 -6.70 16 26 C -0.11 -0.83 6.88 -28.48 -0.20 -1.03 16 27 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 28 H 0.04 1.12 7.34 -51.93 -0.38 0.73 16 29 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.40 3.70 8.47 -40.82 -0.35 3.36 16 36 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.41 2.90 8.96 -40.82 -0.37 2.54 16 42 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -35.60 367.36 -8.87 -44.47 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.07 Total: 0.33 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -3.17 Total: 5.51 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.33 Total: -56.33 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.19 Total: -16.22 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.60 -8.87 -44.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690947355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.286 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds