Wall clock time and date at job start Tue Mar 31 2020 11:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36940 * 119.99929 * 2 1 4 4 H 1.07996 * 119.99596 * 203.05083 * 3 2 1 5 5 C 1.38813 * 120.00193 * 23.04296 * 3 2 1 6 6 N 1.31622 * 119.99655 * 12.94097 * 5 3 2 7 7 Si 1.86795 * 119.99942 * 192.94201 * 5 3 2 8 8 H 1.48498 * 109.47239 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47281 * 119.99947 * 7 5 3 10 10 H 1.48501 * 109.46811 * 240.00108 * 7 5 3 11 11 C 1.46498 * 119.99893 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47037 * 89.99662 * 11 2 1 13 13 N 1.46498 * 109.47037 * 179.97438 * 12 11 2 14 14 C 1.34781 * 120.00209 * 179.73019 * 13 12 11 15 15 O 1.21282 * 119.99807 * 0.27117 * 14 13 12 16 16 C 1.50699 * 120.00312 * 180.27644 * 14 13 12 17 17 C 1.50700 * 109.47269 * 179.97438 * 16 14 13 18 18 C 1.38303 * 119.81012 * 89.99535 * 17 16 14 19 19 C 1.38396 * 119.82543 * 179.97438 * 18 17 16 20 20 C 1.37678 * 119.91372 * 0.02562 * 19 18 17 21 21 C 1.38909 * 120.80737 * 359.97438 * 20 19 18 22 22 C 1.37931 * 119.81127 * 269.72793 * 17 16 14 23 23 N 1.39530 * 110.22727 * 179.97438 * 21 20 19 24 24 C 1.34366 * 112.24708 * 0.02562 * 23 21 20 25 25 O 1.21293 * 126.44361 * 180.02562 * 24 23 21 26 26 C 1.51134 * 132.84955 * 179.97438 * 20 19 18 27 27 H 1.09006 * 109.46625 * 275.12743 * 1 2 3 28 28 H 1.09000 * 109.47311 * 35.12269 * 1 2 3 29 29 H 1.08995 * 109.47503 * 155.12932 * 1 2 3 30 30 H 0.97000 * 119.99576 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.46886 * 330.00107 * 11 2 1 32 32 H 1.08992 * 109.46923 * 210.00045 * 11 2 1 33 33 H 1.09004 * 109.46920 * 60.00465 * 12 11 2 34 34 H 1.08992 * 109.47577 * 299.99983 * 12 11 2 35 35 H 0.97000 * 120.00420 * 359.97438 * 13 12 11 36 36 H 1.08998 * 109.46725 * 299.99955 * 16 14 13 37 37 H 1.09003 * 109.47237 * 59.99751 * 16 14 13 38 38 H 1.08002 * 120.08817 * 359.97438 * 18 17 16 39 39 H 1.07998 * 120.04692 * 179.97438 * 19 18 17 40 40 H 1.08003 * 119.93784 * 359.97438 * 22 17 16 41 41 H 0.96995 * 123.87543 * 180.02562 * 23 21 20 42 42 H 1.09005 * 110.50988 * 298.67663 * 26 20 19 43 43 H 1.08999 * 110.51531 * 61.38965 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3402 0.4705 6 7 0.4119 2.2597 1.1460 7 14 2.3158 4.0074 0.1452 8 1 3.5692 3.8265 -0.6304 9 1 1.3715 4.8506 -0.6309 10 1 2.6242 4.6704 1.4376 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7111 -1.4417 13 7 3.1854 -2.9795 -1.4411 14 6 3.5177 -3.5664 -2.6081 15 8 3.2141 -3.0419 -3.6586 16 6 4.2662 -4.8743 -2.6075 17 6 4.5121 -5.3130 -4.0281 18 6 5.6658 -4.9170 -4.6801 19 6 5.8922 -5.3202 -5.9845 20 6 4.9687 -6.1129 -6.6282 21 6 3.8062 -6.5173 -5.9842 22 6 3.5880 -6.1118 -4.6688 23 7 3.0332 -7.3077 -6.8354 24 6 3.6069 -7.4701 -8.0395 25 8 3.1598 -8.1058 -8.9708 26 6 4.9158 -6.7097 -8.0157 27 1 -0.3633 0.0919 1.0236 28 1 -0.3634 0.8405 -0.5912 29 1 -0.3634 -0.9323 -0.4322 30 1 -0.0152 3.0663 1.4744 31 1 1.6084 -2.0281 0.5147 32 1 3.1498 -1.1382 0.5143 33 1 3.0416 -0.9517 -1.9559 34 1 1.5001 -1.8416 -1.9555 35 1 3.4286 -3.3988 -0.6009 36 1 5.2202 -4.7466 -2.0960 37 1 3.6754 -5.6309 -2.0910 38 1 6.3881 -4.2948 -4.1726 39 1 6.7916 -5.0127 -6.4971 40 1 2.6918 -6.4208 -4.1513 41 1 2.1796 -7.6954 -6.5864 42 1 4.9144 -5.9228 -8.7701 43 1 5.7543 -7.3883 -8.1719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690947355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:21 Heat of formation + Delta-G solvation = -41.330498 kcal Electronic energy + Delta-G solvation = -24940.323362 eV Core-core repulsion = 21178.071074 eV Total energy + Delta-G solvation = -3762.252288 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.41449 -40.76695 -39.41049 -37.85687 -36.91619 -35.61572 -33.88985 -33.26700 -31.48436 -30.57488 -29.66765 -27.93398 -27.08015 -24.87080 -23.74475 -22.54691 -22.36431 -22.03141 -21.01868 -18.85198 -18.73049 -17.92794 -17.72465 -17.16709 -17.04413 -16.76598 -16.56975 -16.19161 -15.82950 -15.40889 -15.19737 -15.00541 -14.83835 -14.69675 -14.27423 -14.17935 -14.02130 -13.69669 -13.35304 -13.07961 -12.92197 -12.80931 -12.70333 -12.60436 -12.49196 -12.14219 -11.96145 -11.88861 -11.79578 -11.76240 -11.34841 -10.91912 -10.66017 -9.99002 -9.67124 -9.00113 -8.82909 -7.85050 -5.35185 0.17639 0.36297 1.39104 1.45421 1.48001 1.57699 1.76144 1.97935 2.26572 2.53040 2.86801 3.11034 3.29330 3.44378 3.75093 3.78721 3.90572 4.13038 4.21259 4.27285 4.35987 4.38052 4.48590 4.50734 4.58961 4.70016 4.71340 4.81666 4.88775 4.98937 5.08789 5.14532 5.17211 5.33827 5.42929 5.53498 5.56529 5.63027 5.67988 5.69545 5.74284 6.06057 6.31337 6.70614 6.88177 7.12796 7.40454 7.83852 8.26429 9.18259 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.002060 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.156083 B =13591.763255 C =13711.131474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.618 5.618 3 C -0.263 4.263 4 H 0.071 0.929 5 C -0.054 4.054 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.267 1.267 9 H -0.294 1.294 10 H -0.289 1.289 11 C 0.146 3.854 12 C 0.117 3.883 13 N -0.713 5.713 14 C 0.506 3.494 15 O -0.588 6.588 16 C -0.092 4.092 17 C -0.044 4.044 18 C -0.130 4.130 19 C -0.069 4.069 20 C -0.150 4.150 21 C 0.118 3.882 22 C -0.131 4.131 23 N -0.654 5.654 24 C 0.522 3.478 25 O -0.551 6.551 26 C -0.106 4.106 27 H 0.011 0.989 28 H 0.012 0.988 29 H 0.031 0.969 30 H 0.249 0.751 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.418 0.582 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.134 0.866 41 H 0.418 0.582 42 H 0.137 0.863 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.012 -21.835 -9.314 27.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.393 4.393 4 H 0.089 0.911 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.191 1.191 9 H -0.221 1.221 10 H -0.215 1.215 11 C 0.019 3.981 12 C -0.011 4.011 13 N -0.366 5.366 14 C 0.294 3.706 15 O -0.468 6.468 16 C -0.132 4.132 17 C -0.045 4.045 18 C -0.148 4.148 19 C -0.087 4.087 20 C -0.153 4.153 21 C 0.022 3.978 22 C -0.151 4.151 23 N -0.297 5.297 24 C 0.312 3.688 25 O -0.430 6.430 26 C -0.145 4.145 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.255 0.745 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.172 0.828 40 H 0.152 0.848 41 H 0.256 0.744 42 H 0.155 0.845 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.517 -21.667 -10.557 27.159 hybrid contribution -0.761 0.965 0.399 1.292 sum 11.756 -20.702 -10.159 25.884 Atomic orbital electron populations 1.20587 0.82706 0.95901 0.97936 1.44051 1.02211 1.01718 1.86145 1.19524 0.98464 0.86757 1.34576 0.91118 1.25799 0.98632 1.01927 0.98512 1.70228 1.20753 1.27617 1.39776 0.85201 0.77982 0.80058 0.77192 1.19145 1.22053 1.21540 1.20972 0.96886 0.87455 0.92740 1.21779 0.94683 0.84522 1.00083 1.45870 1.57750 1.23589 1.09382 1.21289 0.79068 0.87235 0.83019 1.90729 1.56212 1.66755 1.33077 1.20759 1.03842 0.93642 0.94909 1.19216 0.94090 0.95580 0.95613 1.21265 0.97975 1.00495 0.95114 1.20516 0.98854 0.95214 0.94092 1.20013 0.95982 1.03026 0.96230 1.18214 0.92356 0.95055 0.92172 1.20366 1.00957 1.01631 0.92187 1.43731 1.23461 1.49004 1.13509 1.21078 0.87532 0.79452 0.80753 1.90795 1.70590 1.43826 1.37777 1.21089 0.96264 1.01260 0.95884 0.97031 0.96962 0.95057 0.94207 0.91652 0.92079 0.94627 0.94279 0.74507 0.84317 0.84815 0.83805 0.82767 0.84807 0.74378 0.84532 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.50 8.98 127.77 1.15 9.64 16 2 N -0.62 -30.16 2.92 -726.94 -2.12 -32.28 16 3 C -0.26 -14.22 9.65 84.03 0.81 -13.41 16 4 H 0.07 3.72 7.86 -2.91 -0.02 3.69 16 5 C -0.05 -2.98 5.10 84.86 0.43 -2.55 16 6 N -0.94 -55.07 10.71 21.65 0.23 -54.84 16 7 Si 0.97 44.91 29.57 68.60 2.03 46.94 16 8 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 C 0.15 5.29 5.76 86.38 0.50 5.79 16 12 C 0.12 3.94 6.00 86.38 0.52 4.46 16 13 N -0.71 -16.52 5.56 -463.07 -2.57 -19.09 16 14 C 0.51 12.16 7.82 87.66 0.69 12.84 16 15 O -0.59 -20.69 16.03 -3.03 -0.05 -20.73 16 16 C -0.09 -1.17 5.82 29.10 0.17 -1.00 16 17 C -0.04 -0.73 4.36 -19.92 -0.09 -0.81 16 18 C -0.13 -1.98 9.71 22.32 0.22 -1.77 16 19 C -0.07 -0.95 10.04 22.17 0.22 -0.73 16 20 C -0.15 -2.34 6.35 -19.70 -0.13 -2.47 16 21 C 0.12 2.10 7.11 38.35 0.27 2.38 16 22 C -0.13 -2.26 9.71 22.47 0.22 -2.04 16 23 N -0.65 -11.29 5.88 -303.20 -1.78 -13.07 16 24 C 0.52 10.28 8.71 87.94 0.77 11.04 16 25 O -0.55 -14.92 18.03 -3.07 -0.06 -14.98 16 26 C -0.11 -1.38 6.88 29.46 0.20 -1.17 16 27 H 0.01 0.60 7.34 -2.38 -0.02 0.59 16 28 H 0.01 0.63 7.34 -2.39 -0.02 0.61 16 29 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 30 H 0.25 14.17 8.31 -92.71 -0.77 13.39 16 31 H 0.07 2.06 8.07 -2.38 -0.02 2.04 16 32 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 33 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.42 6.26 8.47 -92.71 -0.79 5.47 16 36 H 0.14 0.92 8.08 -2.39 -0.02 0.90 16 37 H 0.13 0.93 8.08 -2.39 -0.02 0.92 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.42 5.89 8.96 -92.71 -0.83 5.06 16 42 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -79.26 367.36 1.06 -78.20 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -0.57 Total: 9.64 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 5.95 Total: 20.21 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.25 Total: -119.28 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.10 Total: -35.71 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -79.26 1.06 -78.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690947355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.872 kcal (2) G-P(sol) polarization free energy of solvation -79.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds