Wall clock time and date at job start Tue Mar 31 2020 11:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99937 * 2 1 4 4 H 1.08005 * 119.99822 * 203.05031 * 3 2 1 5 5 C 1.38806 * 120.00484 * 23.05033 * 3 2 1 6 6 N 1.31618 * 119.99769 * 12.92303 * 5 3 2 7 7 Si 1.86802 * 120.00255 * 192.92739 * 5 3 2 8 8 H 1.48506 * 109.46845 * 59.99922 * 7 5 3 9 9 H 1.48502 * 109.46999 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47262 * 299.99802 * 7 5 3 11 11 C 1.46500 * 119.99849 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46994 * 89.99742 * 11 2 1 13 13 N 1.46498 * 109.47027 * 179.97438 * 12 11 2 14 14 C 1.34773 * 120.00052 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00071 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00128 * 180.02562 * 14 13 12 17 17 N 1.46502 * 109.47264 * 179.97438 * 16 14 13 18 18 C 1.46731 * 125.62696 * 270.00137 * 17 16 14 19 19 C 1.50832 * 106.25535 * 179.82997 * 18 17 16 20 20 C 1.37570 * 133.24126 * 179.58482 * 19 18 17 21 21 C 1.38474 * 119.95753 * 180.30586 * 20 19 18 22 22 C 1.38386 * 120.18528 * 0.27429 * 21 20 19 23 23 C 1.37944 * 120.32403 * 359.97438 * 22 21 20 24 24 C 1.39620 * 119.82440 * 0.02562 * 23 22 21 25 25 C 1.34419 * 125.62132 * 90.02615 * 17 16 14 26 26 O 1.21549 * 124.85991 * 359.97438 * 25 17 16 27 27 H 1.09004 * 109.46590 * 275.12295 * 1 2 3 28 28 H 1.09001 * 109.46964 * 35.11798 * 1 2 3 29 29 H 1.08999 * 109.47513 * 155.12620 * 1 2 3 30 30 H 0.96997 * 120.00118 * 180.02562 * 6 5 3 31 31 H 1.08993 * 109.47308 * 329.99823 * 11 2 1 32 32 H 1.09003 * 109.47487 * 209.99544 * 11 2 1 33 33 H 1.09001 * 109.46883 * 60.00117 * 12 11 2 34 34 H 1.08990 * 109.47441 * 299.99976 * 12 11 2 35 35 H 0.97001 * 120.00072 * 0.02562 * 13 12 11 36 36 H 1.09001 * 109.47066 * 60.00308 * 16 14 13 37 37 H 1.08995 * 109.47725 * 300.00174 * 16 14 13 38 38 H 1.08997 * 110.10033 * 299.21867 * 18 17 16 39 39 H 1.08998 * 110.09816 * 60.82282 * 18 17 16 40 40 H 1.08001 * 120.02661 * 0.57971 * 20 19 18 41 41 H 1.08001 * 119.90938 * 180.25484 * 21 20 19 42 42 H 1.08001 * 119.83699 * 179.97438 * 22 21 20 43 43 H 1.07994 * 120.08844 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3161 4.0073 0.1456 8 1 2.4196 4.2280 -1.3193 9 1 1.4738 5.0719 0.7478 10 1 3.6721 4.0475 0.7494 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 7 3.1854 -2.9782 -1.4439 14 6 3.5219 -3.5615 -2.6113 15 8 3.2183 -3.0361 -3.6614 16 6 4.2754 -4.8666 -2.6119 17 7 4.5185 -5.2895 -3.9934 18 6 3.6275 -6.1326 -4.7986 19 6 4.2949 -6.2897 -6.1420 20 6 3.9522 -6.9631 -7.2916 21 6 4.7927 -6.9260 -8.3914 22 6 5.9803 -6.2177 -8.3359 23 6 6.3359 -5.5433 -7.1864 24 6 5.4936 -5.5759 -6.0734 25 6 5.5950 -4.9696 -4.7321 26 8 6.5197 -4.2796 -4.3499 27 1 -0.3633 0.0918 1.0236 28 1 -0.3633 0.8406 -0.5912 29 1 -0.3634 -0.9323 -0.4322 30 1 -0.0152 3.0662 1.4745 31 1 1.6084 -2.0286 0.5129 32 1 3.1499 -1.1387 0.5133 33 1 3.0415 -0.9499 -1.9568 34 1 1.5000 -1.8399 -1.9572 35 1 3.4279 -3.3987 -0.6040 36 1 3.6865 -5.6264 -2.0981 37 1 5.2280 -4.7365 -2.0984 38 1 3.5019 -7.1055 -4.3235 39 1 2.6595 -5.6463 -4.9190 40 1 3.0260 -7.5167 -7.3380 41 1 4.5209 -7.4516 -9.2949 42 1 6.6319 -6.1930 -9.1969 43 1 7.2634 -4.9914 -7.1474 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753070730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:37 Heat of formation + Delta-G solvation = 4.101031 kcal Electronic energy + Delta-G solvation = -25329.186754 eV Core-core repulsion = 21568.904524 eV Total energy + Delta-G solvation = -3760.282229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42728 -39.43637 -38.22253 -36.34686 -35.95814 -34.18434 -32.42809 -31.44555 -31.31786 -29.00108 -27.38863 -26.91994 -25.85009 -23.83342 -22.83575 -22.02832 -20.77289 -20.63078 -19.85147 -17.43912 -17.29322 -17.06924 -16.66826 -16.37496 -15.70681 -15.37709 -15.30982 -14.81928 -14.65940 -14.40358 -13.96010 -13.66134 -13.58964 -13.52494 -13.47804 -13.28316 -12.70340 -12.66349 -12.36975 -12.21601 -12.05600 -11.43025 -11.18375 -10.90517 -10.83788 -10.62267 -10.36805 -10.17601 -10.08766 -9.97665 -9.89507 -9.41322 -9.25142 -8.88987 -8.75831 -8.55777 -6.80487 -5.74555 -3.22736 0.46828 0.92506 2.33641 2.60372 2.71552 3.36554 3.40865 3.45084 3.47900 3.57679 3.76090 4.10876 4.50202 4.50664 4.60976 4.76377 4.78768 4.88779 4.94999 5.05096 5.10517 5.12662 5.35403 5.39113 5.56012 5.61652 5.76418 5.79306 5.88712 5.91407 6.01442 6.21196 6.23883 6.44043 6.55643 6.63912 6.71016 6.73588 6.86617 7.34940 7.65774 7.69751 7.79827 7.92997 8.34409 8.39077 9.20875 9.83053 10.30819 11.30325 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.002261 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.496534 B =12382.071328 C =12768.828504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.721 5.721 14 C 0.487 3.513 15 O -0.532 6.532 16 C 0.118 3.882 17 N -0.599 5.599 18 C 0.143 3.857 19 C -0.078 4.078 20 C -0.104 4.104 21 C -0.089 4.089 22 C -0.129 4.129 23 C -0.046 4.046 24 C -0.152 4.152 25 C 0.564 3.436 26 O -0.521 6.521 27 H 0.033 0.967 28 H 0.042 0.958 29 H -0.002 1.002 30 H 0.254 0.746 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.398 0.602 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 -24.902 -13.821 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.373 5.373 14 C 0.270 3.730 15 O -0.409 6.409 16 C -0.008 4.008 17 N -0.331 5.331 18 C 0.020 3.980 19 C -0.080 4.080 20 C -0.122 4.122 21 C -0.108 4.108 22 C -0.147 4.147 23 C -0.065 4.065 24 C -0.155 4.155 25 C 0.353 3.647 26 O -0.397 6.397 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.017 0.983 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.231 0.769 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.760 -23.926 -14.150 28.607 hybrid contribution 0.315 0.887 0.216 0.966 sum 7.075 -23.039 -13.934 27.839 Atomic orbital electron populations 1.20838 0.82317 0.95561 0.99620 1.43780 1.01948 1.00331 1.85943 1.19150 0.98376 0.85531 1.35906 0.91385 1.25028 0.97833 0.98635 0.97968 1.70058 1.19374 1.27438 1.38302 0.86308 0.78458 0.83552 0.78074 1.20966 1.21570 1.20830 1.20838 0.96777 0.89172 0.91665 1.22446 0.95493 0.82965 1.02165 1.46053 1.58196 1.25269 1.07799 1.21063 0.80314 0.87050 0.84561 1.90729 1.54084 1.64690 1.31349 1.21214 1.02724 0.95199 0.81620 1.47304 1.21520 1.51202 1.13052 1.20497 0.94238 0.95561 0.87665 1.20460 0.95350 0.96851 0.95297 1.20302 1.00481 0.99985 0.91454 1.21328 0.93815 0.97593 0.98030 1.21142 0.97505 0.98148 0.97893 1.20896 0.98596 0.96239 0.90781 1.20384 0.97358 1.02252 0.95516 1.18230 0.81866 0.79656 0.84902 1.90791 1.35146 1.37883 1.75874 0.94830 0.93951 0.98312 0.93627 0.94060 0.92876 0.91603 0.92273 0.76893 0.86826 0.86562 0.88431 0.88251 0.85034 0.84966 0.84974 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.98 59.85 0.54 4.52 16 2 N -0.60 -15.06 2.92 -181.12 -0.53 -15.59 16 3 C -0.26 -7.24 9.65 -15.06 -0.15 -7.39 16 4 H 0.07 1.87 7.86 -52.48 -0.41 1.45 16 5 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 6 N -0.91 -26.60 10.71 55.49 0.59 -26.01 16 7 Si 0.91 22.28 29.57 -169.99 -5.03 17.26 16 8 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 C 0.14 2.83 5.76 -4.04 -0.02 2.81 16 12 C 0.10 1.75 6.00 -4.04 -0.02 1.73 16 13 N -0.72 -10.05 5.56 -60.30 -0.33 -10.39 16 14 C 0.49 7.21 7.90 -10.99 -0.09 7.12 16 15 O -0.53 -10.53 16.43 5.56 0.09 -10.44 16 16 C 0.12 1.20 6.54 -5.19 -0.03 1.17 16 17 N -0.60 -7.10 2.45 -177.52 -0.44 -7.54 16 18 C 0.14 1.23 7.38 -5.00 -0.04 1.20 16 19 C -0.08 -0.73 6.38 -104.26 -0.66 -1.40 16 20 C -0.10 -0.72 10.03 -39.74 -0.40 -1.12 16 21 C -0.09 -0.56 10.05 -39.44 -0.40 -0.96 16 22 C -0.13 -0.94 10.02 -39.63 -0.40 -1.33 16 23 C -0.05 -0.46 10.10 -39.17 -0.40 -0.86 16 24 C -0.15 -1.82 6.26 -105.05 -0.66 -2.47 16 25 C 0.56 8.30 7.97 -12.63 -0.10 8.20 16 26 O -0.52 -9.53 17.71 5.32 0.09 -9.44 16 27 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 28 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 29 H 0.00 -0.04 8.03 -51.93 -0.42 -0.45 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 33 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.12 1.11 8.01 -51.93 -0.42 0.69 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -37.89 369.21 -9.03 -46.92 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.13 Total: -1.57 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -2.91 Total: 11.23 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.71 Total: -59.52 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.19 Total: -19.87 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.89 -9.03 -46.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753070730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.018 kcal (2) G-P(sol) polarization free energy of solvation -37.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds