Wall clock time and date at job start Tue Mar 31 2020 11:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99937 * 2 1 4 4 H 1.08005 * 119.99822 * 203.05031 * 3 2 1 5 5 C 1.38806 * 120.00484 * 23.05033 * 3 2 1 6 6 N 1.31618 * 119.99769 * 12.92303 * 5 3 2 7 7 Si 1.86802 * 120.00255 * 192.92739 * 5 3 2 8 8 H 1.48506 * 109.46845 * 59.99922 * 7 5 3 9 9 H 1.48502 * 109.46999 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47262 * 299.99802 * 7 5 3 11 11 C 1.46500 * 119.99849 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46994 * 89.99742 * 11 2 1 13 13 N 1.46498 * 109.47027 * 179.97438 * 12 11 2 14 14 C 1.34773 * 120.00052 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00071 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00128 * 180.02562 * 14 13 12 17 17 N 1.46502 * 109.47264 * 179.97438 * 16 14 13 18 18 C 1.46731 * 125.62696 * 270.00137 * 17 16 14 19 19 C 1.50832 * 106.25535 * 179.82997 * 18 17 16 20 20 C 1.37570 * 133.24126 * 179.58482 * 19 18 17 21 21 C 1.38474 * 119.95753 * 180.30586 * 20 19 18 22 22 C 1.38386 * 120.18528 * 0.27429 * 21 20 19 23 23 C 1.37944 * 120.32403 * 359.97438 * 22 21 20 24 24 C 1.39620 * 119.82440 * 0.02562 * 23 22 21 25 25 C 1.34419 * 125.62132 * 90.02615 * 17 16 14 26 26 O 1.21549 * 124.85991 * 359.97438 * 25 17 16 27 27 H 1.09004 * 109.46590 * 275.12295 * 1 2 3 28 28 H 1.09001 * 109.46964 * 35.11798 * 1 2 3 29 29 H 1.08999 * 109.47513 * 155.12620 * 1 2 3 30 30 H 0.96997 * 120.00118 * 180.02562 * 6 5 3 31 31 H 1.08993 * 109.47308 * 329.99823 * 11 2 1 32 32 H 1.09003 * 109.47487 * 209.99544 * 11 2 1 33 33 H 1.09001 * 109.46883 * 60.00117 * 12 11 2 34 34 H 1.08990 * 109.47441 * 299.99976 * 12 11 2 35 35 H 0.97001 * 120.00072 * 0.02562 * 13 12 11 36 36 H 1.09001 * 109.47066 * 60.00308 * 16 14 13 37 37 H 1.08995 * 109.47725 * 300.00174 * 16 14 13 38 38 H 1.08997 * 110.10033 * 299.21867 * 18 17 16 39 39 H 1.08998 * 110.09816 * 60.82282 * 18 17 16 40 40 H 1.08001 * 120.02661 * 0.57971 * 20 19 18 41 41 H 1.08001 * 119.90938 * 180.25484 * 21 20 19 42 42 H 1.08001 * 119.83699 * 179.97438 * 22 21 20 43 43 H 1.07994 * 120.08844 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3161 4.0073 0.1456 8 1 2.4196 4.2280 -1.3193 9 1 1.4738 5.0719 0.7478 10 1 3.6721 4.0475 0.7494 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 7 3.1854 -2.9782 -1.4439 14 6 3.5219 -3.5615 -2.6113 15 8 3.2183 -3.0361 -3.6614 16 6 4.2754 -4.8666 -2.6119 17 7 4.5185 -5.2895 -3.9934 18 6 3.6275 -6.1326 -4.7986 19 6 4.2949 -6.2897 -6.1420 20 6 3.9522 -6.9631 -7.2916 21 6 4.7927 -6.9260 -8.3914 22 6 5.9803 -6.2177 -8.3359 23 6 6.3359 -5.5433 -7.1864 24 6 5.4936 -5.5759 -6.0734 25 6 5.5950 -4.9696 -4.7321 26 8 6.5197 -4.2796 -4.3499 27 1 -0.3633 0.0918 1.0236 28 1 -0.3633 0.8406 -0.5912 29 1 -0.3634 -0.9323 -0.4322 30 1 -0.0152 3.0662 1.4745 31 1 1.6084 -2.0286 0.5129 32 1 3.1499 -1.1387 0.5133 33 1 3.0415 -0.9499 -1.9568 34 1 1.5000 -1.8399 -1.9572 35 1 3.4279 -3.3987 -0.6040 36 1 3.6865 -5.6264 -2.0981 37 1 5.2280 -4.7365 -2.0984 38 1 3.5019 -7.1055 -4.3235 39 1 2.6595 -5.6463 -4.9190 40 1 3.0260 -7.5167 -7.3380 41 1 4.5209 -7.4516 -9.2949 42 1 6.6319 -6.1930 -9.1969 43 1 7.2634 -4.9914 -7.1474 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753070730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:36 Heat of formation + Delta-G solvation = -22.764866 kcal Electronic energy + Delta-G solvation = -25330.351747 eV Core-core repulsion = 21568.904524 eV Total energy + Delta-G solvation = -3761.447222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25945 -40.61643 -39.10014 -37.90707 -37.13616 -35.74133 -33.49771 -33.00317 -32.07103 -30.34060 -28.54058 -27.91737 -27.70485 -25.23467 -23.93007 -22.67244 -22.41726 -21.81519 -20.88144 -18.87509 -18.39884 -18.06196 -18.01867 -17.24907 -16.90391 -16.61505 -16.55222 -16.23616 -15.65296 -15.51154 -15.16338 -15.07239 -14.82601 -14.67272 -14.44803 -14.32310 -14.17446 -14.06198 -13.34082 -13.18024 -13.02091 -12.80778 -12.77251 -12.69111 -12.53138 -12.21624 -12.04336 -11.99799 -11.83318 -11.37825 -11.10475 -10.69628 -10.21128 -10.12665 -9.92591 -9.67833 -8.85943 -7.88206 -5.38339 -0.24373 0.33296 1.42279 1.45198 1.45882 1.52309 1.55036 1.77229 2.26081 2.50468 2.81256 3.08559 3.25439 3.38178 3.64197 3.87748 3.91049 4.08145 4.16899 4.20699 4.25741 4.27253 4.33623 4.43288 4.50994 4.51926 4.64033 4.77382 4.79728 4.97561 5.02596 5.07474 5.10707 5.28944 5.36384 5.43111 5.45309 5.49491 5.58858 5.68006 5.79514 5.91106 6.28259 6.52697 6.93208 7.10140 7.22688 7.80857 8.22569 9.14537 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.002261 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.496534 B =12382.071328 C =12768.828504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.617 5.617 3 C -0.269 4.269 4 H 0.065 0.935 5 C -0.049 4.049 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.285 1.285 9 H -0.289 1.289 10 H -0.274 1.274 11 C 0.148 3.852 12 C 0.117 3.883 13 N -0.706 5.706 14 C 0.484 3.516 15 O -0.588 6.588 16 C 0.122 3.878 17 N -0.599 5.599 18 C 0.139 3.861 19 C -0.081 4.081 20 C -0.102 4.102 21 C -0.079 4.079 22 C -0.129 4.129 23 C -0.068 4.068 24 C -0.195 4.195 25 C 0.546 3.454 26 O -0.580 6.580 27 H 0.013 0.987 28 H 0.012 0.988 29 H 0.034 0.966 30 H 0.250 0.750 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.046 0.954 35 H 0.420 0.580 36 H 0.172 0.828 37 H 0.124 0.876 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.158 0.842 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.158 -28.058 -14.733 32.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.400 4.400 4 H 0.083 0.917 5 C -0.244 4.244 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.211 1.211 9 H -0.215 1.215 10 H -0.199 1.199 11 C 0.021 3.979 12 C -0.011 4.011 13 N -0.360 5.360 14 C 0.270 3.730 15 O -0.468 6.468 16 C -0.003 4.003 17 N -0.329 5.329 18 C 0.018 3.982 19 C -0.083 4.083 20 C -0.120 4.120 21 C -0.097 4.097 22 C -0.147 4.147 23 C -0.087 4.087 24 C -0.198 4.198 25 C 0.337 3.663 26 O -0.461 6.461 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.258 0.742 36 H 0.189 0.811 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.117 0.883 40 H 0.184 0.816 41 H 0.187 0.813 42 H 0.175 0.825 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.259 -27.160 -15.033 31.668 hybrid contribution 0.460 1.755 0.403 1.859 sum 6.720 -25.405 -14.630 30.077 Atomic orbital electron populations 1.20605 0.82400 0.96044 0.98059 1.44026 1.02353 1.01544 1.86140 1.19412 0.98417 0.87012 1.35114 0.91716 1.25754 0.98597 1.01762 0.98333 1.70197 1.20539 1.27849 1.39400 0.85367 0.77931 0.79699 0.77598 1.21111 1.21486 1.19923 1.20961 0.96912 0.87711 0.92363 1.21841 0.94657 0.84048 1.00515 1.45791 1.57410 1.23675 1.09084 1.21954 0.79423 0.88120 0.83534 1.90710 1.56319 1.66429 1.33326 1.21460 1.03202 0.93925 0.81706 1.47558 1.21135 1.50583 1.13635 1.20801 0.93062 0.96829 0.87474 1.20724 0.94293 0.96758 0.96498 1.20756 1.01634 0.99159 0.90401 1.21842 0.92626 0.96149 0.99062 1.21476 0.98476 0.97277 0.97439 1.21064 0.98511 0.97360 0.91746 1.20437 0.99743 1.04621 0.95029 1.18908 0.81910 0.79135 0.86320 1.90727 1.37430 1.40725 1.77223 0.96850 0.96959 0.94790 0.94042 0.90945 0.92453 0.95458 0.93535 0.74238 0.81070 0.85809 0.84093 0.88309 0.81645 0.81270 0.82465 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.60 8.98 127.77 1.15 9.75 16 2 N -0.62 -31.13 2.92 -726.94 -2.12 -33.25 16 3 C -0.27 -15.16 9.65 84.03 0.81 -14.35 16 4 H 0.07 3.60 7.86 -2.91 -0.02 3.58 16 5 C -0.05 -2.80 5.10 84.86 0.43 -2.36 16 6 N -0.93 -55.64 10.71 21.65 0.23 -55.41 16 7 Si 0.97 46.41 29.57 68.60 2.03 48.43 16 8 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 9 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 C 0.15 5.62 5.76 86.38 0.50 6.12 16 12 C 0.12 4.27 6.00 86.38 0.52 4.78 16 13 N -0.71 -18.67 5.56 -463.07 -2.57 -21.24 16 14 C 0.48 13.94 7.90 87.66 0.69 14.63 16 15 O -0.59 -23.71 16.43 -3.04 -0.05 -23.76 16 16 C 0.12 2.23 6.54 85.63 0.56 2.79 16 17 N -0.60 -13.67 2.45 -834.02 -2.05 -15.71 16 18 C 0.14 2.08 7.38 85.63 0.63 2.71 16 19 C -0.08 -1.39 6.38 -19.63 -0.13 -1.51 16 20 C -0.10 -1.06 10.03 22.17 0.22 -0.84 16 21 C -0.08 -0.71 10.05 22.36 0.22 -0.49 16 22 C -0.13 -1.65 10.02 22.24 0.22 -1.43 16 23 C -0.07 -1.40 10.10 22.53 0.23 -1.17 16 24 C -0.20 -4.78 6.26 -20.14 -0.13 -4.90 16 25 C 0.55 16.77 7.97 86.75 0.69 17.46 16 26 O -0.58 -22.83 17.71 -3.87 -0.07 -22.90 16 27 H 0.01 0.71 7.34 -2.38 -0.02 0.69 16 28 H 0.01 0.64 7.34 -2.39 -0.02 0.62 16 29 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 30 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 32 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.42 7.36 8.47 -92.71 -0.79 6.57 16 36 H 0.17 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.12 2.17 8.01 -2.39 -0.02 2.15 16 38 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 41 H 0.17 0.30 8.06 -2.91 -0.02 0.27 16 42 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -88.70 369.21 2.27 -86.44 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 0.24 Total: 6.21 kcal Atomic # 6 Polarization: 24.56 SS G_CDS: 6.63 Total: 31.19 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -6.51 Total: -125.61 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -0.12 Total: -46.66 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -88.70 2.27 -86.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753070730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.672 kcal (2) G-P(sol) polarization free energy of solvation -88.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds