Wall clock time and date at job start Tue Mar 31 2020 11:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35770 * 117.00121 * 2 1 4 4 C 1.38082 * 120.20219 * 359.97438 * 3 2 1 5 5 C 1.38742 * 120.40408 * 179.97438 * 4 3 2 6 6 C 1.37769 * 120.72221 * 0.04236 * 5 4 3 7 7 C 1.39162 * 120.07875 * 359.96314 * 6 5 4 8 8 N 1.37537 * 133.06063 * 180.02562 * 7 6 5 9 9 H 0.97002 * 125.62923 * 359.97252 * 8 7 6 10 10 C 1.38288 * 108.74408 * 179.97438 * 8 7 6 11 11 C 1.46913 * 125.45495 * 180.02562 * 10 8 7 12 12 O 1.21664 * 120.00286 * 179.97438 * 11 10 8 13 13 N 1.34783 * 120.00107 * 359.96896 * 11 10 8 14 14 C 1.46502 * 120.00244 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47133 * 180.02562 * 14 13 11 16 16 N 1.46493 * 109.47104 * 180.02562 * 15 14 13 17 17 C 1.46499 * 120.00192 * 269.99869 * 16 15 14 18 18 C 1.36945 * 120.00388 * 90.00316 * 16 15 14 19 19 H 1.07999 * 119.99302 * 22.33719 * 18 16 15 20 20 C 1.38804 * 120.00382 * 202.34532 * 18 16 15 21 21 N 1.31623 * 119.99664 * 11.34657 * 20 18 16 22 22 Si 1.86792 * 120.00229 * 191.35096 * 20 18 16 23 23 H 1.48496 * 109.47317 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47259 * 119.99858 * 22 20 18 25 25 H 1.48508 * 109.47173 * 239.99753 * 22 20 18 26 26 C 1.35937 * 109.09225 * 359.97438 * 10 8 7 27 27 C 1.40557 * 120.20691 * 179.72752 * 3 2 1 28 28 H 1.08999 * 109.46779 * 299.99693 * 1 2 3 29 29 H 1.08995 * 109.47096 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47180 * 60.00101 * 1 2 3 31 31 H 1.08003 * 119.79909 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.63931 * 180.02562 * 5 4 3 33 33 H 1.07998 * 119.96097 * 179.97438 * 6 5 4 34 34 H 0.96997 * 119.99299 * 0.02562 * 13 11 10 35 35 H 1.09000 * 109.46608 * 300.00489 * 14 13 11 36 36 H 1.09006 * 109.46525 * 60.00329 * 14 13 11 37 37 H 1.09007 * 109.47295 * 299.99955 * 15 14 13 38 38 H 1.08995 * 109.47257 * 60.00091 * 15 14 13 39 39 H 1.09000 * 109.46992 * 94.20629 * 17 16 15 40 40 H 1.09002 * 109.47766 * 214.21159 * 17 16 15 41 41 H 1.09001 * 109.47254 * 334.20972 * 17 16 15 42 42 H 0.97001 * 120.00208 * 179.97438 * 21 20 18 43 43 H 1.08004 * 126.12607 * 180.02562 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2975 2.3704 -0.0005 5 6 1.9230 3.6088 0.0000 6 6 3.2975 3.7031 0.0002 7 6 4.0757 2.5494 0.0006 8 7 5.4339 2.3328 0.0013 9 1 6.1161 3.0225 0.0013 10 6 5.6666 0.9697 0.0021 11 6 6.9896 0.3309 0.0035 12 8 7.0794 -0.8824 0.0045 13 7 8.1040 1.0891 0.0036 14 6 9.4233 0.4522 0.0045 15 6 10.5097 1.5295 0.0050 16 7 11.8289 0.8926 0.0053 17 6 12.4882 0.5739 1.2741 18 6 12.4460 0.5952 -1.1806 19 1 12.1692 1.1240 -2.0807 20 6 13.4269 -0.3858 -1.2256 21 7 13.6099 -1.1814 -0.1932 22 14 14.4875 -0.5767 -2.7514 23 1 14.0845 0.4321 -3.7638 24 1 15.9139 -0.3749 -2.3912 25 1 14.3067 -1.9398 -3.3125 26 6 4.4751 0.3153 0.0024 27 6 3.4488 1.2883 0.0058 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 0.2189 2.3139 -0.0014 32 1 1.3260 4.5088 0.0000 33 1 3.7716 4.6734 0.0002 34 1 8.0323 2.0564 0.0031 35 1 9.5266 -0.1681 0.8948 36 1 9.5274 -0.1689 -0.8853 37 1 10.4064 2.1502 -0.8851 38 1 10.4053 2.1503 0.8948 39 1 12.2650 -0.4565 1.5508 40 1 13.5659 0.6953 1.1642 41 1 12.1244 1.2458 2.0515 42 1 14.2951 -1.8672 -0.2247 43 1 4.3369 -0.7559 0.0034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753074068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:19 Heat of formation + Delta-G solvation = 12.768370 kcal Electronic energy + Delta-G solvation = -25191.043793 eV Core-core repulsion = 21431.137408 eV Total energy + Delta-G solvation = -3759.906385 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.80413 -39.68269 -38.82464 -36.26992 -36.05335 -34.27387 -32.05057 -31.39465 -29.93495 -28.96009 -28.23670 -27.36820 -25.90746 -24.34005 -22.72930 -22.21565 -21.36886 -20.73196 -19.99296 -18.95169 -17.80274 -16.78397 -16.46752 -16.08144 -16.03836 -15.56660 -15.46775 -15.33205 -14.75295 -14.39884 -14.33198 -13.81363 -13.61355 -13.48085 -13.17129 -13.08975 -12.69650 -12.46756 -12.33554 -12.17801 -11.79989 -11.34322 -11.26300 -11.15373 -10.92146 -10.89117 -10.63389 -10.33912 -10.05460 -10.00434 -9.85246 -9.69679 -8.82621 -8.60193 -8.51813 -7.66551 -6.86394 -5.77655 -3.25354 0.65469 1.30897 2.02227 2.65011 3.02345 3.27028 3.37126 3.41933 3.43513 3.45495 3.60455 4.45497 4.49488 4.62859 4.71327 4.80556 4.84174 4.89471 5.05428 5.13982 5.17995 5.33699 5.36908 5.51717 5.57822 5.80628 5.83162 5.87856 5.97863 6.18341 6.20773 6.29674 6.39532 6.54436 6.61617 6.65196 6.69129 6.89780 7.14231 7.17011 7.33564 7.64918 7.69509 7.77462 8.29456 8.34924 9.17434 9.79167 10.26966 11.27391 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026969 B = 0.002212 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.969859 B =12657.006692 C =13008.891973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.189 3.811 4 C -0.253 4.253 5 C -0.049 4.049 6 C -0.172 4.172 7 C 0.148 3.852 8 N -0.576 5.576 9 H 0.420 0.580 10 C 0.013 3.987 11 C 0.575 3.425 12 O -0.521 6.521 13 N -0.721 5.721 14 C 0.094 3.906 15 C 0.144 3.856 16 N -0.596 5.596 17 C 0.162 3.838 18 C -0.261 4.261 19 H 0.071 0.929 20 C 0.003 3.997 21 N -0.905 5.905 22 Si 0.908 3.092 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.289 1.289 26 C -0.090 4.090 27 C -0.143 4.143 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.390 0.610 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.030 0.970 40 H 0.048 0.952 41 H -0.002 1.002 42 H 0.254 0.746 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.023 10.844 2.127 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.142 3.858 4 C -0.273 4.273 5 C -0.069 4.069 6 C -0.193 4.193 7 C 0.037 3.963 8 N -0.181 5.181 9 H 0.259 0.741 10 C -0.095 4.095 11 C 0.360 3.640 12 O -0.397 6.397 13 N -0.371 5.371 14 C -0.032 4.032 15 C 0.015 3.985 16 N -0.318 5.318 17 C 0.017 3.983 18 C -0.390 4.390 19 H 0.089 0.911 20 C -0.195 4.195 21 N -0.549 5.549 22 Si 0.737 3.263 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.216 1.216 26 C -0.116 4.116 27 C -0.148 4.148 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.222 0.778 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.064 0.936 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -25.472 9.643 2.162 27.322 hybrid contribution 0.578 0.663 -0.787 1.180 sum -24.895 10.306 1.375 26.979 Atomic orbital electron populations 1.23096 0.78193 1.04080 1.01452 1.86072 1.21455 1.26989 1.87654 1.18482 0.89766 0.84372 0.93200 1.20859 0.99764 0.91853 1.14823 1.20551 0.93207 0.96940 0.96171 1.19917 0.93151 0.95466 1.10810 1.18002 0.82810 0.94556 1.00960 1.41983 1.05609 1.06548 1.63920 0.74116 1.20356 0.95336 0.82105 1.11736 1.17195 0.82298 0.86872 0.77614 1.90877 1.86216 1.12829 1.49737 1.46125 1.07006 1.09456 1.74549 1.22643 0.79043 0.98660 1.02810 1.20998 0.85247 0.93150 0.99097 1.43938 1.13075 1.71031 1.03764 1.20861 0.96820 0.96686 0.83910 1.19256 1.16919 1.15084 0.87790 0.91150 1.25083 1.00911 0.95924 0.97618 1.70078 1.34631 1.20230 1.29978 0.86141 0.80162 0.77609 0.82351 1.20285 1.21540 1.21583 1.20819 0.88684 0.99665 1.02451 1.17356 0.90508 0.93382 1.13525 0.92495 0.88142 0.92485 0.85378 0.85361 0.85818 0.77788 0.91774 0.90896 0.93323 0.93978 0.95138 0.93361 0.98374 0.93610 0.82501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.32 10.50 -19.02 -0.20 -3.52 16 3 C 0.19 2.12 6.73 -38.77 -0.26 1.86 16 4 C -0.25 -2.22 9.03 -39.45 -0.36 -2.57 16 5 C -0.05 -0.39 10.01 -39.57 -0.40 -0.78 16 6 C -0.17 -1.51 10.06 -39.41 -0.40 -1.91 16 7 C 0.15 1.64 7.25 -83.98 -0.61 1.03 16 8 N -0.58 -6.03 6.08 -7.36 -0.04 -6.07 16 9 H 0.42 3.07 8.12 -40.82 -0.33 2.74 16 10 C 0.01 0.18 6.97 -82.27 -0.57 -0.39 16 11 C 0.58 9.50 7.79 -12.75 -0.10 9.40 16 12 O -0.52 -10.85 16.84 5.22 0.09 -10.76 16 13 N -0.72 -10.75 5.55 -61.54 -0.34 -11.09 16 14 C 0.09 1.79 6.00 -4.04 -0.02 1.77 16 15 C 0.14 2.77 5.82 -4.05 -0.02 2.74 16 16 N -0.60 -14.70 2.93 -181.13 -0.53 -15.23 16 17 C 0.16 3.95 9.01 59.85 0.54 4.48 16 18 C -0.26 -7.08 9.67 -15.06 -0.15 -7.23 16 19 H 0.07 1.86 7.84 -52.49 -0.41 1.45 16 20 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 21 N -0.90 -26.40 10.59 55.49 0.59 -25.81 16 22 Si 0.91 21.85 29.57 -169.99 -5.03 16.82 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.09 -1.27 10.52 -39.19 -0.41 -1.68 16 27 C -0.14 -1.82 6.11 -106.83 -0.65 -2.47 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.13 0.81 6.28 -52.48 -0.33 0.48 16 32 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.39 4.30 7.53 -40.82 -0.31 3.99 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 37 H 0.05 0.88 8.03 -51.93 -0.42 0.47 16 38 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 39 H 0.03 0.81 7.42 -51.93 -0.39 0.42 16 40 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 41 H 0.00 -0.05 7.85 -51.93 -0.41 -0.46 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.16 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -34.31 363.63 -8.33 -42.65 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.84 Total: 2.12 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.51 Total: 5.42 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.33 Total: -58.21 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.11 Total: -14.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.31 -8.33 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753074068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.416 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds