Wall clock time and date at job start Tue Mar 31 2020 11:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35770 * 117.00121 * 2 1 4 4 C 1.38082 * 120.20219 * 359.97438 * 3 2 1 5 5 C 1.38742 * 120.40408 * 179.97438 * 4 3 2 6 6 C 1.37769 * 120.72221 * 0.04236 * 5 4 3 7 7 C 1.39162 * 120.07875 * 359.96314 * 6 5 4 8 8 N 1.37537 * 133.06063 * 180.02562 * 7 6 5 9 9 H 0.97002 * 125.62923 * 359.97252 * 8 7 6 10 10 C 1.38288 * 108.74408 * 179.97438 * 8 7 6 11 11 C 1.46913 * 125.45495 * 180.02562 * 10 8 7 12 12 O 1.21664 * 120.00286 * 179.97438 * 11 10 8 13 13 N 1.34783 * 120.00107 * 359.96896 * 11 10 8 14 14 C 1.46502 * 120.00244 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47133 * 180.02562 * 14 13 11 16 16 N 1.46493 * 109.47104 * 180.02562 * 15 14 13 17 17 C 1.46499 * 120.00192 * 269.99869 * 16 15 14 18 18 C 1.36945 * 120.00388 * 90.00316 * 16 15 14 19 19 H 1.07999 * 119.99302 * 22.33719 * 18 16 15 20 20 C 1.38804 * 120.00382 * 202.34532 * 18 16 15 21 21 N 1.31623 * 119.99664 * 11.34657 * 20 18 16 22 22 Si 1.86792 * 120.00229 * 191.35096 * 20 18 16 23 23 H 1.48496 * 109.47317 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47259 * 119.99858 * 22 20 18 25 25 H 1.48508 * 109.47173 * 239.99753 * 22 20 18 26 26 C 1.35937 * 109.09225 * 359.97438 * 10 8 7 27 27 C 1.40557 * 120.20691 * 179.72752 * 3 2 1 28 28 H 1.08999 * 109.46779 * 299.99693 * 1 2 3 29 29 H 1.08995 * 109.47096 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47180 * 60.00101 * 1 2 3 31 31 H 1.08003 * 119.79909 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.63931 * 180.02562 * 5 4 3 33 33 H 1.07998 * 119.96097 * 179.97438 * 6 5 4 34 34 H 0.96997 * 119.99299 * 0.02562 * 13 11 10 35 35 H 1.09000 * 109.46608 * 300.00489 * 14 13 11 36 36 H 1.09006 * 109.46525 * 60.00329 * 14 13 11 37 37 H 1.09007 * 109.47295 * 299.99955 * 15 14 13 38 38 H 1.08995 * 109.47257 * 60.00091 * 15 14 13 39 39 H 1.09000 * 109.46992 * 94.20629 * 17 16 15 40 40 H 1.09002 * 109.47766 * 214.21159 * 17 16 15 41 41 H 1.09001 * 109.47254 * 334.20972 * 17 16 15 42 42 H 0.97001 * 120.00208 * 179.97438 * 21 20 18 43 43 H 1.08004 * 126.12607 * 180.02562 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2975 2.3704 -0.0005 5 6 1.9230 3.6088 0.0000 6 6 3.2975 3.7031 0.0002 7 6 4.0757 2.5494 0.0006 8 7 5.4339 2.3328 0.0013 9 1 6.1161 3.0225 0.0013 10 6 5.6666 0.9697 0.0021 11 6 6.9896 0.3309 0.0035 12 8 7.0794 -0.8824 0.0045 13 7 8.1040 1.0891 0.0036 14 6 9.4233 0.4522 0.0045 15 6 10.5097 1.5295 0.0050 16 7 11.8289 0.8926 0.0053 17 6 12.4882 0.5739 1.2741 18 6 12.4460 0.5952 -1.1806 19 1 12.1692 1.1240 -2.0807 20 6 13.4269 -0.3858 -1.2256 21 7 13.6099 -1.1814 -0.1932 22 14 14.4875 -0.5767 -2.7514 23 1 14.0845 0.4321 -3.7638 24 1 15.9139 -0.3749 -2.3912 25 1 14.3067 -1.9398 -3.3125 26 6 4.4751 0.3153 0.0024 27 6 3.4488 1.2883 0.0058 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 0.2189 2.3139 -0.0014 32 1 1.3260 4.5088 0.0000 33 1 3.7716 4.6734 0.0002 34 1 8.0323 2.0564 0.0031 35 1 9.5266 -0.1681 0.8948 36 1 9.5274 -0.1689 -0.8853 37 1 10.4064 2.1502 -0.8851 38 1 10.4053 2.1503 0.8948 39 1 12.2650 -0.4565 1.5508 40 1 13.5659 0.6953 1.1642 41 1 12.1244 1.2458 2.0515 42 1 14.2951 -1.8672 -0.2247 43 1 4.3369 -0.7559 0.0034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753074068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:18 Heat of formation + Delta-G solvation = -11.387121 kcal Electronic energy + Delta-G solvation = -25192.091254 eV Core-core repulsion = 21431.137408 eV Total energy + Delta-G solvation = -3760.953846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.69105 -40.73091 -39.84595 -37.89917 -36.95553 -35.88452 -33.36753 -32.85220 -31.01763 -29.74994 -29.58928 -28.07563 -27.91695 -25.73479 -24.10879 -22.98337 -22.44778 -22.32490 -21.18799 -19.86708 -18.88513 -18.63705 -17.43328 -16.92317 -16.84952 -16.80718 -16.61029 -16.54799 -16.24137 -15.67848 -15.49133 -15.23404 -14.97485 -14.67482 -14.41908 -14.22025 -14.13690 -13.91132 -13.26038 -13.14560 -12.83754 -12.83356 -12.67848 -12.50691 -12.43192 -12.08804 -12.03650 -11.97703 -11.81608 -11.78494 -11.43127 -10.69446 -10.57578 -10.27134 -9.35888 -8.88950 -8.46426 -7.86836 -5.36642 -0.24956 0.57141 1.02795 1.45130 1.46588 1.56750 1.77038 1.99630 2.21292 2.39313 2.50232 2.84683 3.28866 3.55825 3.79104 3.86092 4.03638 4.06277 4.19983 4.22055 4.27607 4.38553 4.44900 4.49086 4.58242 4.62328 4.74191 4.79232 4.83222 4.93044 5.01944 5.05139 5.29293 5.31533 5.33279 5.41585 5.51149 5.58051 5.61522 5.71554 5.84156 6.28909 6.34468 6.47853 6.51653 7.02232 7.11084 7.81235 8.23327 9.17023 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026969 B = 0.002212 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.969859 B =12657.006692 C =13008.891973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.168 3.832 4 C -0.248 4.248 5 C -0.039 4.039 6 C -0.175 4.175 7 C 0.148 3.852 8 N -0.561 5.561 9 H 0.435 0.565 10 C 0.002 3.998 11 C 0.578 3.422 12 O -0.574 6.574 13 N -0.702 5.702 14 C 0.114 3.886 15 C 0.146 3.854 16 N -0.614 5.614 17 C 0.174 3.826 18 C -0.265 4.265 19 H 0.078 0.922 20 C -0.056 4.056 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.289 1.289 25 H -0.297 1.297 26 C -0.103 4.103 27 C -0.175 4.175 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.413 0.587 35 H 0.039 0.961 36 H 0.035 0.965 37 H 0.067 0.933 38 H 0.077 0.923 39 H -0.001 1.001 40 H 0.022 0.978 41 H 0.037 0.963 42 H 0.248 0.752 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.435 14.566 1.689 31.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.121 3.879 4 C -0.267 4.267 5 C -0.059 4.059 6 C -0.196 4.196 7 C 0.036 3.964 8 N -0.168 5.168 9 H 0.277 0.723 10 C -0.107 4.107 11 C 0.365 3.635 12 O -0.453 6.453 13 N -0.353 5.353 14 C -0.013 4.013 15 C 0.019 3.981 16 N -0.337 5.337 17 C 0.029 3.971 18 C -0.395 4.395 19 H 0.095 0.905 20 C -0.251 4.251 21 N -0.586 5.586 22 Si 0.799 3.201 23 H -0.187 1.187 24 H -0.216 1.216 25 H -0.224 1.224 26 C -0.131 4.131 27 C -0.180 4.180 28 H 0.089 0.911 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.171 0.829 34 H 0.250 0.750 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.017 0.983 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.916 13.460 1.717 31.040 hybrid contribution 1.067 -0.413 -0.623 1.303 sum -26.850 13.048 1.094 29.872 Atomic orbital electron populations 1.23389 0.75987 1.05499 1.02742 1.86035 1.23867 1.27421 1.87755 1.18736 0.89558 0.85444 0.94130 1.21256 1.01096 0.91308 1.13080 1.21079 0.93242 0.97899 0.93668 1.20327 0.93500 0.95726 1.10072 1.18325 0.82709 0.94837 1.00539 1.41782 1.06137 1.05349 1.63489 0.72298 1.19709 0.93346 0.83702 1.13909 1.17513 0.83382 0.86283 0.76332 1.90846 1.87070 1.15235 1.52164 1.45726 1.05165 1.10522 1.73923 1.22078 0.81210 0.98117 0.99850 1.21158 0.82534 0.92740 1.01655 1.44184 1.15325 1.71068 1.03084 1.20617 0.95543 0.95888 0.85061 1.19628 1.16604 1.14400 0.88830 0.90475 1.25881 1.02646 0.96197 1.00417 1.70254 1.35355 1.21055 1.31920 0.85150 0.78321 0.77237 0.79417 1.18660 1.21557 1.22398 1.20851 0.89902 0.99494 1.02806 1.17626 0.91410 0.93729 1.15217 0.91086 0.86901 0.91116 0.82757 0.81618 0.82892 0.75031 0.94273 0.94633 0.91450 0.90451 0.98300 0.95901 0.94474 0.94262 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.18 10.50 -90.97 -0.95 -8.14 16 3 C 0.17 3.61 6.73 22.80 0.15 3.76 16 4 C -0.25 -3.55 9.03 22.35 0.20 -3.35 16 5 C -0.04 -0.45 10.01 22.28 0.22 -0.23 16 6 C -0.18 -2.39 10.06 22.38 0.23 -2.17 16 7 C 0.15 2.98 7.25 39.11 0.28 3.26 16 8 N -0.56 -10.87 6.08 -177.19 -1.08 -11.95 16 9 H 0.44 5.22 8.12 -92.71 -0.75 4.46 16 10 C 0.00 0.07 6.97 39.86 0.28 0.35 16 11 C 0.58 19.65 7.79 86.51 0.67 20.32 16 12 O -0.57 -25.39 16.84 -4.23 -0.07 -25.46 16 13 N -0.70 -20.59 5.55 -466.85 -2.59 -23.18 16 14 C 0.11 4.42 6.00 86.38 0.52 4.94 16 15 C 0.15 5.38 5.82 86.38 0.50 5.88 16 16 N -0.61 -30.10 2.93 -726.96 -2.13 -32.22 16 17 C 0.17 8.54 9.01 127.77 1.15 9.69 16 18 C -0.26 -14.34 9.67 84.03 0.81 -13.53 16 19 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 20 C -0.06 -3.19 5.13 84.86 0.44 -2.75 16 21 N -0.94 -56.55 10.59 21.65 0.23 -56.32 16 22 Si 0.97 45.47 29.57 68.60 2.03 47.50 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 26 C -0.10 -3.06 10.52 22.52 0.24 -2.82 16 27 C -0.18 -4.43 6.11 -21.29 -0.13 -4.56 16 28 H 0.07 0.52 7.66 -2.39 -0.02 0.51 16 29 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 31 H 0.15 1.31 6.28 -2.91 -0.02 1.29 16 32 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 33 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.41 8.21 7.53 -92.71 -0.70 7.51 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.07 2.26 8.03 -2.38 -0.02 2.24 16 38 H 0.08 2.34 7.86 -2.39 -0.02 2.32 16 39 H 0.00 -0.08 7.42 -2.39 -0.02 -0.09 16 40 H 0.02 1.20 7.19 -2.39 -0.02 1.18 16 41 H 0.04 1.50 7.85 -2.39 -0.02 1.48 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -78.84 363.63 1.71 -77.12 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.40 Total: 12.55 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 6.68 Total: 20.10 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.57 Total: -123.67 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.03 Total: -33.59 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -78.84 1.71 -77.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753074068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.735 kcal (2) G-P(sol) polarization free energy of solvation -78.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds