Wall clock time and date at job start Tue Mar 31 2020 11:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36942 * 119.99635 * 2 1 4 4 H 1.08001 * 119.99485 * 202.33884 * 3 2 1 5 5 C 1.38811 * 120.00177 * 22.34388 * 3 2 1 6 6 N 1.31617 * 119.99732 * 11.35612 * 5 3 2 7 7 Si 1.86799 * 119.99952 * 191.35092 * 5 3 2 8 8 H 1.48503 * 109.46899 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46785 * 119.99907 * 7 5 3 10 10 H 1.48498 * 109.47273 * 240.00012 * 7 5 3 11 11 C 1.46496 * 119.99848 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.46961 * 269.99595 * 11 2 1 13 13 N 1.46496 * 109.46961 * 180.02562 * 12 11 2 14 14 C 1.34770 * 120.00098 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99959 * 0.02562 * 14 13 12 16 16 C 1.50707 * 120.00164 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.46722 * 180.02562 * 16 14 13 18 18 H 1.08990 * 110.45826 * 305.69840 * 17 16 14 19 19 C 1.51142 * 110.50608 * 183.09653 * 17 16 14 20 20 C 1.37686 * 132.84290 * 61.19802 * 19 17 16 21 21 C 1.38391 * 119.91018 * 180.02562 * 20 19 17 22 22 C 1.38304 * 119.82775 * 359.93373 * 21 20 19 23 23 C 1.37942 * 120.37560 * 0.04946 * 22 21 20 24 24 C 1.38897 * 106.34559 * 241.22139 * 19 17 16 25 25 N 1.39537 * 110.22885 * 359.97438 * 24 19 17 26 26 C 1.34371 * 112.24168 * 0.02562 * 25 24 19 27 27 O 1.21289 * 126.43727 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47146 * 274.21044 * 1 2 3 29 29 H 1.09001 * 109.47258 * 34.20974 * 1 2 3 30 30 H 1.09003 * 109.47350 * 154.20963 * 1 2 3 31 31 H 0.97007 * 119.99488 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.46952 * 150.00022 * 11 2 1 33 33 H 1.08998 * 109.47546 * 30.00199 * 11 2 1 34 34 H 1.09000 * 109.46939 * 60.00419 * 12 11 2 35 35 H 1.08998 * 109.47033 * 300.00356 * 12 11 2 36 36 H 0.97003 * 120.00063 * 0.02562 * 13 12 11 37 37 H 1.09000 * 109.47040 * 60.00234 * 16 14 13 38 38 H 1.08998 * 109.47383 * 299.99894 * 16 14 13 39 39 H 1.07995 * 120.04520 * 0.03050 * 20 19 17 40 40 H 1.07998 * 120.08576 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.81773 * 180.02562 * 22 21 20 42 42 H 1.07998 * 119.93200 * 179.97438 * 23 22 21 43 43 H 0.96994 * 123.87835 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1689 1.2211 -0.3555 5 6 1.5337 2.3430 0.4570 6 7 0.3842 2.2690 1.0937 7 14 2.3365 4.0048 0.1685 8 1 3.6136 3.8168 -0.5656 9 1 1.4265 4.8614 -0.6336 10 1 2.6072 4.6573 1.4747 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 7 3.1855 -2.9794 1.4413 14 6 3.5222 -3.5637 2.6081 15 8 3.2179 -3.0396 3.6587 16 6 4.2767 -4.8682 2.6076 17 6 4.5305 -5.3111 4.0499 18 1 5.0301 -4.5201 4.6090 19 6 5.3523 -6.5793 4.0776 20 6 6.6163 -6.8859 3.6257 21 6 7.1178 -8.1647 3.7937 22 6 6.3472 -9.1296 4.4166 23 6 5.0808 -8.8249 4.8706 24 6 4.5681 -7.5397 4.7034 25 7 3.3372 -6.9939 5.0694 26 6 3.2324 -5.6992 4.7253 27 8 2.2772 -4.9773 4.9191 28 1 -0.3633 0.0754 1.0249 29 1 -0.3634 0.8499 -0.5778 30 1 -0.3634 -0.9253 -0.4471 31 1 -0.0464 3.0776 1.4127 32 1 3.1499 -1.1381 -0.5143 33 1 1.6085 -2.0281 -0.5147 34 1 1.5001 -1.8415 1.9556 35 1 3.0416 -0.9515 1.9559 36 1 3.4286 -3.3987 0.6010 37 1 5.2294 -4.7367 2.0945 38 1 3.6886 -5.6279 2.0928 39 1 7.2154 -6.1295 3.1408 40 1 8.1087 -8.4085 3.4400 41 1 6.7390 -10.1274 4.5481 42 1 4.4850 -9.5839 5.3556 43 1 2.6376 -7.4918 5.5204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753075421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:25 Heat of formation + Delta-G solvation = -8.429626 kcal Electronic energy + Delta-G solvation = -25611.148902 eV Core-core repulsion = 21850.323303 eV Total energy + Delta-G solvation = -3760.825600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86392 -39.22499 -38.45959 -36.00373 -35.82621 -34.04990 -33.68683 -31.32756 -30.56049 -29.45004 -28.13274 -26.14047 -25.76315 -23.15855 -22.88637 -21.74221 -21.10453 -20.58364 -19.77319 -18.14082 -17.33410 -16.81044 -16.59775 -16.17966 -15.90118 -15.47353 -15.02713 -14.75377 -14.65685 -14.33746 -14.10150 -13.73163 -13.50248 -13.30320 -13.24952 -12.92294 -12.63852 -12.36559 -12.23858 -12.14344 -11.84392 -11.25230 -11.14850 -11.07965 -10.84919 -10.79439 -10.56186 -10.23840 -10.06690 -9.93988 -9.86726 -9.50600 -9.22075 -8.56103 -8.48320 -8.33853 -6.78433 -5.71035 -3.18242 0.83649 0.93380 2.36230 2.75754 3.01414 3.37668 3.40532 3.46119 3.48745 3.53001 3.87545 4.15011 4.45997 4.53044 4.59497 4.67609 4.90070 4.94833 5.02340 5.14472 5.27782 5.35264 5.44335 5.53701 5.62712 5.68972 5.75412 5.94308 6.00514 6.04560 6.10876 6.31217 6.33187 6.56619 6.70353 6.75622 6.78899 6.82599 7.06716 7.40317 7.76067 7.83501 7.88767 7.91181 8.40372 8.64394 9.24251 9.86557 10.34866 11.34083 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.002356 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.495323 B =11883.119601 C =12224.671358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.258 4.258 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.096 3.904 13 N -0.727 5.727 14 C 0.496 3.504 15 O -0.515 6.515 16 C -0.118 4.118 17 C -0.065 4.065 18 H 0.131 0.869 19 C -0.140 4.140 20 C -0.062 4.062 21 C -0.145 4.145 22 C -0.084 4.084 23 C -0.145 4.145 24 C 0.151 3.849 25 N -0.669 5.669 26 C 0.526 3.474 27 O -0.457 6.457 28 H 0.030 0.970 29 H 0.047 0.953 30 H -0.003 1.003 31 H 0.253 0.747 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.393 0.607 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.208 -26.306 3.727 29.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.016 3.984 12 C -0.029 4.029 13 N -0.380 5.380 14 C 0.280 3.720 15 O -0.390 6.390 16 C -0.158 4.158 17 C -0.086 4.086 18 H 0.149 0.851 19 C -0.143 4.143 20 C -0.080 4.080 21 C -0.164 4.164 22 C -0.103 4.103 23 C -0.166 4.166 24 C 0.054 3.946 25 N -0.314 5.314 26 C 0.312 3.688 27 O -0.326 6.326 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.226 0.774 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 12.267 -25.155 4.613 28.364 hybrid contribution 0.119 0.369 -0.055 0.391 sum 12.386 -24.787 4.558 28.081 Atomic orbital electron populations 1.20846 0.82177 0.95688 0.99505 1.43940 1.02078 1.00389 1.85581 1.19256 0.98103 0.85198 1.36216 0.91182 1.25082 0.97687 0.98712 0.98191 1.70087 1.17789 1.27084 1.40042 0.86149 0.78611 0.84121 0.77438 1.20294 1.21600 1.21653 1.20989 0.96250 0.88862 0.92293 1.22473 0.95775 0.82807 1.01860 1.46129 1.58760 1.25431 1.07639 1.20399 0.80596 0.86391 0.84615 1.90811 1.53114 1.64287 1.30754 1.21462 1.02643 0.96616 0.95104 1.20422 0.93704 0.96818 0.97698 0.85131 1.19840 0.95719 0.94658 1.04071 1.20329 0.93094 0.96880 0.97709 1.21064 1.00512 0.92993 1.01820 1.20884 0.93092 0.99570 0.96762 1.20373 0.97149 0.93783 1.05278 1.18201 0.85743 0.94090 0.96605 1.43916 1.16070 1.12792 1.58580 1.20512 0.89245 0.80630 0.78440 1.90937 1.35110 1.54251 1.52311 0.95210 0.93445 0.98415 0.93691 0.93381 0.94091 0.92288 0.91433 0.77428 0.87547 0.88829 0.85211 0.85334 0.85321 0.85713 0.75118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.12 9.01 59.85 0.54 4.66 16 2 N -0.60 -15.30 2.93 -181.11 -0.53 -15.83 16 3 C -0.26 -7.19 9.67 -15.06 -0.15 -7.33 16 4 H 0.07 1.89 7.84 -52.49 -0.41 1.48 16 5 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 6 N -0.91 -27.11 10.59 55.49 0.59 -26.52 16 7 Si 0.91 22.24 29.57 -169.99 -5.03 17.21 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 C 0.14 2.93 5.82 -4.04 -0.02 2.90 16 12 C 0.10 1.96 6.00 -4.04 -0.02 1.94 16 13 N -0.73 -11.22 5.56 -60.29 -0.33 -11.55 16 14 C 0.50 7.94 7.52 -10.98 -0.08 7.86 16 15 O -0.51 -10.87 13.80 -16.44 -0.23 -11.10 16 16 C -0.12 -1.24 5.23 -27.88 -0.15 -1.39 16 17 C -0.06 -0.73 2.60 -92.37 -0.24 -0.97 16 18 H 0.13 1.58 7.96 -51.93 -0.41 1.16 16 19 C -0.14 -1.24 5.67 -104.36 -0.59 -1.83 16 20 C -0.06 -0.42 10.04 -39.73 -0.40 -0.82 16 21 C -0.14 -0.82 10.07 -39.50 -0.40 -1.22 16 22 C -0.08 -0.47 10.02 -39.67 -0.40 -0.86 16 23 C -0.14 -0.95 10.07 -39.27 -0.40 -1.35 16 24 C 0.15 1.32 7.11 -83.69 -0.60 0.72 16 25 N -0.67 -6.63 5.88 -9.70 -0.06 -6.69 16 26 C 0.53 7.23 7.83 -10.83 -0.08 7.14 16 27 O -0.46 -8.57 15.77 -16.45 -0.26 -8.83 16 28 H 0.03 0.82 7.42 -51.93 -0.39 0.44 16 29 H 0.05 1.28 7.19 -51.93 -0.37 0.90 16 30 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.05 0.91 8.03 -51.93 -0.42 0.50 16 33 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.39 4.52 8.47 -40.82 -0.35 4.18 16 37 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 41 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 42 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.41 3.20 8.96 -40.82 -0.37 2.83 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -36.94 361.88 -9.51 -46.46 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.05 Total: 2.00 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -3.07 Total: 9.41 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.33 Total: -60.60 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.49 Total: -19.93 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.94 -9.51 -46.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753075421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.026 kcal (2) G-P(sol) polarization free energy of solvation -36.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds