Wall clock time and date at job start Tue Mar 31 2020 11:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36942 * 119.99635 * 2 1 4 4 H 1.08001 * 119.99485 * 202.33884 * 3 2 1 5 5 C 1.38811 * 120.00177 * 22.34388 * 3 2 1 6 6 N 1.31617 * 119.99732 * 11.35612 * 5 3 2 7 7 Si 1.86799 * 119.99952 * 191.35092 * 5 3 2 8 8 H 1.48503 * 109.46899 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46785 * 119.99907 * 7 5 3 10 10 H 1.48498 * 109.47273 * 240.00012 * 7 5 3 11 11 C 1.46496 * 119.99848 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.46961 * 269.99595 * 11 2 1 13 13 N 1.46496 * 109.46961 * 180.02562 * 12 11 2 14 14 C 1.34770 * 120.00098 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99959 * 0.02562 * 14 13 12 16 16 C 1.50707 * 120.00164 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.46722 * 180.02562 * 16 14 13 18 18 H 1.08990 * 110.45826 * 305.69840 * 17 16 14 19 19 C 1.51142 * 110.50608 * 183.09653 * 17 16 14 20 20 C 1.37686 * 132.84290 * 61.19802 * 19 17 16 21 21 C 1.38391 * 119.91018 * 180.02562 * 20 19 17 22 22 C 1.38304 * 119.82775 * 359.93373 * 21 20 19 23 23 C 1.37942 * 120.37560 * 0.04946 * 22 21 20 24 24 C 1.38897 * 106.34559 * 241.22139 * 19 17 16 25 25 N 1.39537 * 110.22885 * 359.97438 * 24 19 17 26 26 C 1.34371 * 112.24168 * 0.02562 * 25 24 19 27 27 O 1.21289 * 126.43727 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47146 * 274.21044 * 1 2 3 29 29 H 1.09001 * 109.47258 * 34.20974 * 1 2 3 30 30 H 1.09003 * 109.47350 * 154.20963 * 1 2 3 31 31 H 0.97007 * 119.99488 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.46952 * 150.00022 * 11 2 1 33 33 H 1.08998 * 109.47546 * 30.00199 * 11 2 1 34 34 H 1.09000 * 109.46939 * 60.00419 * 12 11 2 35 35 H 1.08998 * 109.47033 * 300.00356 * 12 11 2 36 36 H 0.97003 * 120.00063 * 0.02562 * 13 12 11 37 37 H 1.09000 * 109.47040 * 60.00234 * 16 14 13 38 38 H 1.08998 * 109.47383 * 299.99894 * 16 14 13 39 39 H 1.07995 * 120.04520 * 0.03050 * 20 19 17 40 40 H 1.07998 * 120.08576 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.81773 * 180.02562 * 22 21 20 42 42 H 1.07998 * 119.93200 * 179.97438 * 23 22 21 43 43 H 0.96994 * 123.87835 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1689 1.2211 -0.3555 5 6 1.5337 2.3430 0.4570 6 7 0.3842 2.2690 1.0937 7 14 2.3365 4.0048 0.1685 8 1 3.6136 3.8168 -0.5656 9 1 1.4265 4.8614 -0.6336 10 1 2.6072 4.6573 1.4747 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 7 3.1855 -2.9794 1.4413 14 6 3.5222 -3.5637 2.6081 15 8 3.2179 -3.0396 3.6587 16 6 4.2767 -4.8682 2.6076 17 6 4.5305 -5.3111 4.0499 18 1 5.0301 -4.5201 4.6090 19 6 5.3523 -6.5793 4.0776 20 6 6.6163 -6.8859 3.6257 21 6 7.1178 -8.1647 3.7937 22 6 6.3472 -9.1296 4.4166 23 6 5.0808 -8.8249 4.8706 24 6 4.5681 -7.5397 4.7034 25 7 3.3372 -6.9939 5.0694 26 6 3.2324 -5.6992 4.7253 27 8 2.2772 -4.9773 4.9191 28 1 -0.3633 0.0754 1.0249 29 1 -0.3634 0.8499 -0.5778 30 1 -0.3634 -0.9253 -0.4471 31 1 -0.0464 3.0776 1.4127 32 1 3.1499 -1.1381 -0.5143 33 1 1.6085 -2.0281 -0.5147 34 1 1.5001 -1.8415 1.9556 35 1 3.0416 -0.9515 1.9559 36 1 3.4286 -3.3987 0.6010 37 1 5.2294 -4.7367 2.0945 38 1 3.6886 -5.6279 2.0928 39 1 7.2154 -6.1295 3.1408 40 1 8.1087 -8.4085 3.4400 41 1 6.7390 -10.1274 4.5481 42 1 4.4850 -9.5839 5.3556 43 1 2.6376 -7.4918 5.5204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753075421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:24 Heat of formation + Delta-G solvation = -34.586629 kcal Electronic energy + Delta-G solvation = -25612.283155 eV Core-core repulsion = 21850.323303 eV Total energy + Delta-G solvation = -3761.959852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.66391 -40.49776 -39.34907 -37.85625 -36.63759 -35.67055 -34.57161 -33.27612 -31.29712 -30.26771 -29.53371 -27.96227 -27.09166 -24.86846 -23.49984 -22.42145 -22.36935 -22.15587 -20.98899 -18.87219 -18.79574 -18.27657 -17.72683 -17.24439 -16.84805 -16.64904 -16.57358 -16.32191 -15.71098 -15.33754 -15.16161 -14.98754 -14.82125 -14.68263 -14.27076 -14.14049 -13.98236 -13.68356 -13.45270 -13.10389 -12.99506 -12.82194 -12.63620 -12.57772 -12.49266 -12.05518 -12.02370 -11.82211 -11.77835 -11.75226 -11.15391 -10.81352 -10.68792 -10.00321 -9.77525 -8.98686 -8.88014 -7.85927 -5.35923 0.22439 0.44242 1.44925 1.45588 1.46262 1.57302 1.74949 2.00112 2.21181 2.51768 2.90024 3.09555 3.29051 3.32783 3.71477 3.75963 3.95307 4.06139 4.20392 4.23637 4.27200 4.38253 4.48366 4.52335 4.61614 4.66110 4.69275 4.81941 4.83746 5.06761 5.10449 5.17731 5.20636 5.29677 5.52200 5.53061 5.62551 5.63871 5.69669 5.69817 5.83799 6.12656 6.29857 6.67570 6.98173 7.11016 7.41527 7.81984 8.25025 9.18386 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.002356 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.495323 B =11883.119601 C =12224.671358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.263 4.263 4 H 0.079 0.921 5 C -0.060 4.060 6 N -0.942 5.942 7 Si 0.973 3.027 8 H -0.260 1.260 9 H -0.289 1.289 10 H -0.297 1.297 11 C 0.148 3.852 12 C 0.118 3.882 13 N -0.713 5.713 14 C 0.489 3.511 15 O -0.572 6.572 16 C -0.102 4.102 17 C -0.064 4.064 18 H 0.115 0.885 19 C -0.147 4.147 20 C -0.065 4.065 21 C -0.137 4.137 22 C -0.083 4.083 23 C -0.141 4.141 24 C 0.124 3.876 25 N -0.658 5.658 26 C 0.516 3.484 27 O -0.525 6.525 28 H -0.005 1.005 29 H 0.023 0.977 30 H 0.035 0.965 31 H 0.247 0.753 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.021 0.979 35 H 0.028 0.972 36 H 0.417 0.583 37 H 0.150 0.850 38 H 0.114 0.886 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.142 0.858 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.634 -29.435 1.872 33.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.339 5.339 3 C -0.393 4.393 4 H 0.097 0.903 5 C -0.255 4.255 6 N -0.589 5.589 7 Si 0.801 3.199 8 H -0.184 1.184 9 H -0.216 1.216 10 H -0.224 1.224 11 C 0.021 3.979 12 C -0.009 4.009 13 N -0.367 5.367 14 C 0.276 3.724 15 O -0.450 6.450 16 C -0.142 4.142 17 C -0.086 4.086 18 H 0.133 0.867 19 C -0.149 4.149 20 C -0.083 4.083 21 C -0.156 4.156 22 C -0.101 4.101 23 C -0.162 4.162 24 C 0.028 3.972 25 N -0.302 5.302 26 C 0.303 3.697 27 O -0.399 6.399 28 H 0.013 0.987 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.254 0.746 37 H 0.167 0.833 38 H 0.132 0.868 39 H 0.167 0.833 40 H 0.174 0.826 41 H 0.175 0.825 42 H 0.160 0.840 43 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 15.778 -28.398 2.705 32.600 hybrid contribution -0.827 1.121 0.551 1.498 sum 14.951 -27.277 3.256 31.276 Atomic orbital electron populations 1.20587 0.82630 0.96448 0.97316 1.44217 1.02327 1.01785 1.85597 1.19660 0.98387 0.86247 1.35006 0.90282 1.25938 0.98497 1.02427 0.98622 1.70279 1.19453 1.27482 1.41711 0.85104 0.78308 0.79573 0.76877 1.18365 1.21559 1.22438 1.21146 0.97246 0.87449 0.92086 1.21833 0.93828 0.84167 1.01076 1.45835 1.57989 1.23764 1.09086 1.21421 0.79817 0.87686 0.83492 1.90801 1.55201 1.66123 1.32869 1.21478 1.03967 0.93295 0.95430 1.20337 0.92858 0.97798 0.97596 0.86689 1.19730 0.96641 0.93004 1.05564 1.20614 0.92178 0.98072 0.97435 1.21468 1.01485 0.92237 1.00395 1.21304 0.92346 1.00962 0.95524 1.20684 0.97814 0.93070 1.04650 1.18457 0.85190 0.95287 0.98305 1.43762 1.17004 1.11755 1.57698 1.20965 0.89301 0.81331 0.78096 1.90894 1.37525 1.56201 1.55325 0.98684 0.95793 0.94682 0.94346 0.91201 0.90899 0.96031 0.95352 0.74562 0.83263 0.86761 0.83286 0.82612 0.82465 0.83977 0.74331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.07 9.01 127.77 1.15 10.22 16 2 N -0.62 -31.68 2.93 -726.91 -2.13 -33.80 16 3 C -0.26 -14.69 9.67 84.03 0.81 -13.88 16 4 H 0.08 4.19 7.84 -2.91 -0.02 4.17 16 5 C -0.06 -3.49 5.13 84.86 0.44 -3.06 16 6 N -0.94 -58.57 10.59 21.65 0.23 -58.34 16 7 Si 0.97 46.39 29.57 68.60 2.03 48.42 16 8 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 10 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 11 C 0.15 5.79 5.82 86.38 0.50 6.29 16 12 C 0.12 4.92 6.00 86.38 0.52 5.44 16 13 N -0.71 -21.40 5.56 -463.06 -2.57 -23.98 16 14 C 0.49 15.74 7.52 87.66 0.66 16.40 16 15 O -0.57 -25.60 13.80 18.00 0.25 -25.35 16 16 C -0.10 -1.97 5.23 29.85 0.16 -1.81 16 17 C -0.06 -1.43 2.60 -11.93 -0.03 -1.46 16 18 H 0.12 2.90 7.96 -2.39 -0.02 2.88 16 19 C -0.15 -2.28 5.67 -19.70 -0.11 -2.39 16 20 C -0.06 -0.64 10.04 22.18 0.22 -0.41 16 21 C -0.14 -0.91 10.07 22.32 0.22 -0.68 16 22 C -0.08 -0.55 10.02 22.22 0.22 -0.33 16 23 C -0.14 -1.42 10.07 22.47 0.23 -1.20 16 24 C 0.12 1.95 7.11 38.34 0.27 2.22 16 25 N -0.66 -13.14 5.88 -303.21 -1.78 -14.92 16 26 C 0.52 14.85 7.83 87.94 0.69 15.53 16 27 O -0.53 -21.31 15.77 17.98 0.28 -21.03 16 28 H -0.01 -0.30 7.42 -2.39 -0.02 -0.32 16 29 H 0.02 1.31 7.19 -2.39 -0.02 1.29 16 30 H 0.03 1.51 7.84 -2.39 -0.02 1.49 16 31 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 32 H 0.07 2.46 8.03 -2.39 -0.02 2.45 16 33 H 0.07 2.42 7.86 -2.39 -0.02 2.40 16 34 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.42 8.41 8.47 -92.71 -0.79 7.62 16 37 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.15 0.85 8.06 -2.91 -0.02 0.82 16 40 H 0.16 0.22 8.06 -2.91 -0.02 0.20 16 41 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 42 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.42 6.69 8.96 -92.71 -0.83 5.86 16 Total: -1.00 -87.40 361.88 1.69 -85.72 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -0.57 Total: 12.41 kcal Atomic # 6 Polarization: 24.93 SS G_CDS: 5.95 Total: 30.88 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -6.25 Total: -131.04 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: 0.53 Total: -46.38 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -87.40 1.69 -85.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753075421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.131 kcal (2) G-P(sol) polarization free energy of solvation -87.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds