Wall clock time and date at job start Tue Mar 31 2020 11:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99905 * 2 1 4 4 C 1.52994 * 109.47069 * 270.00055 * 3 2 1 5 5 N 1.46502 * 109.47057 * 180.02562 * 4 3 2 6 6 C 1.36929 * 120.00020 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00441 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00023 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00090 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00051 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46932 * 90.00274 * 10 8 6 12 12 H 1.48507 * 109.47166 * 210.00190 * 10 8 6 13 13 H 1.48500 * 109.47305 * 329.99851 * 10 8 6 14 14 C 1.34773 * 119.99858 * 180.02562 * 2 1 3 15 15 O 1.21287 * 119.99655 * 180.02562 * 14 2 1 16 16 C 1.50700 * 120.00434 * 359.97438 * 14 2 1 17 17 N 1.46494 * 109.47138 * 179.97438 * 16 14 2 18 18 C 1.46733 * 125.63110 * 269.99944 * 17 16 14 19 19 C 1.50824 * 106.25492 * 179.83437 * 18 17 16 20 20 C 1.37578 * 133.23760 * 179.58426 * 19 18 17 21 21 C 1.38476 * 119.95420 * 180.30433 * 20 19 18 22 22 C 1.38380 * 120.19100 * 0.28122 * 21 20 19 23 23 C 1.37939 * 120.31999 * 359.97161 * 22 21 20 24 24 C 1.39628 * 119.82739 * 0.02562 * 23 22 21 25 25 C 1.34432 * 125.62096 * 90.03291 * 17 16 14 26 26 O 1.21554 * 124.85490 * 359.97438 * 25 17 16 27 27 H 1.08997 * 109.47121 * 269.99637 * 1 2 3 28 28 H 1.08998 * 109.46991 * 30.00258 * 1 2 3 29 29 H 1.08997 * 109.46922 * 149.99911 * 1 2 3 30 30 H 1.08999 * 109.46575 * 30.00102 * 3 2 1 31 31 H 1.08996 * 109.46735 * 149.99924 * 3 2 1 32 32 H 1.09008 * 109.47036 * 299.99916 * 4 3 2 33 33 H 1.08995 * 109.47206 * 59.99562 * 4 3 2 34 34 H 0.97001 * 119.99873 * 359.97438 * 5 4 3 35 35 H 0.97000 * 120.00320 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.46666 * 60.00055 * 16 14 2 37 37 H 1.09001 * 109.47157 * 300.00867 * 16 14 2 38 38 H 1.08996 * 110.09864 * 299.22730 * 18 17 16 39 39 H 1.09000 * 110.09162 * 60.82760 * 18 17 16 40 40 H 1.08002 * 120.02542 * 0.58788 * 20 19 18 41 41 H 1.08001 * 119.89945 * 180.25103 * 21 20 19 42 42 H 1.08002 * 119.84291 * 179.97438 * 22 21 20 43 43 H 1.08004 * 120.08779 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4424 5 7 3.1855 2.9789 -1.4424 6 6 3.5284 3.5715 -2.6283 7 1 3.2581 3.1041 -3.5636 8 6 4.2225 4.7736 -2.6283 9 7 4.5506 5.3441 -1.4885 10 14 4.6896 5.5825 -4.2460 11 1 3.6009 6.4969 -4.6747 12 1 5.9447 6.3562 -4.0684 13 1 4.8947 4.5374 -5.2810 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1671 -0.0001 16 6 1.3854 -2.4723 -0.0005 17 7 2.3375 -3.5858 -0.0018 18 6 2.8920 -4.2349 -1.1951 19 6 3.8202 -5.3138 -0.6959 20 6 4.6095 -6.2456 -1.3298 21 6 5.3676 -7.1320 -0.5834 22 6 5.3296 -7.0876 0.7991 23 6 4.5377 -6.1608 1.4446 24 6 3.7704 -5.2636 0.6990 25 6 2.8466 -4.1817 1.0904 26 8 2.5834 -3.8736 2.2364 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1384 0.5138 32 1 3.0417 0.9507 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 3.4280 3.3989 -0.6024 35 1 5.0359 6.1840 -1.4884 36 1 0.7585 -2.5298 -0.8903 37 1 0.7590 -2.5302 0.8896 38 1 2.0905 -4.6723 -1.7903 39 1 3.4491 -3.5113 -1.7902 40 1 4.6413 -6.2827 -2.4087 41 1 5.9900 -7.8604 -1.0819 42 1 5.9229 -7.7819 1.3757 43 1 4.5112 -6.1292 2.5238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753253083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:13 Heat of formation + Delta-G solvation = 0.988648 kcal Electronic energy + Delta-G solvation = -25656.906373 eV Core-core repulsion = 21896.489180 eV Total energy + Delta-G solvation = -3760.417193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42877 -39.71547 -38.24756 -36.35767 -35.78695 -34.37830 -32.46931 -31.42381 -31.33182 -28.96773 -27.68134 -26.94403 -26.26842 -24.01212 -23.03303 -22.00243 -21.52870 -20.34634 -19.15362 -17.48639 -17.28637 -17.13599 -16.98840 -16.32808 -15.81437 -15.68748 -15.24435 -14.82187 -14.47594 -14.41178 -13.83963 -13.74187 -13.53576 -13.45463 -13.42708 -13.28803 -13.04505 -12.87145 -12.68354 -12.37330 -12.23535 -12.14387 -11.40384 -11.26535 -11.00000 -10.89026 -10.68220 -10.16778 -10.10417 -10.07394 -9.74392 -9.38410 -9.22090 -8.87787 -8.85655 -8.53962 -6.93176 -5.75599 -3.05117 0.49340 0.95788 2.31631 2.61649 2.64537 3.13511 3.44192 3.48995 3.51325 3.54392 3.78573 4.13188 4.42093 4.53908 4.61773 4.63836 4.72539 4.89768 4.94067 5.03274 5.04605 5.12948 5.16507 5.31254 5.38690 5.49439 5.58544 5.59666 5.64181 5.79275 5.83581 5.94709 6.02305 6.04392 6.12954 6.21549 6.47024 6.52832 6.71206 6.73185 6.88830 7.43292 7.69864 7.91858 8.22771 8.42733 9.53501 10.09847 10.44806 11.47336 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.002612 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.189828 B =10715.182892 C =11658.802424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.610 5.610 3 C 0.107 3.893 4 C 0.145 3.855 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.933 5.933 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.489 3.511 15 O -0.520 6.520 16 C 0.121 3.879 17 N -0.599 5.599 18 C 0.142 3.858 19 C -0.077 4.077 20 C -0.103 4.103 21 C -0.089 4.089 22 C -0.129 4.129 23 C -0.046 4.046 24 C -0.153 4.153 25 C 0.566 3.434 26 O -0.523 6.523 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.021 0.979 33 H 0.018 0.982 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 -27.311 2.000 28.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.345 5.345 3 C -0.015 4.015 4 C 0.016 3.984 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.275 3.725 15 O -0.395 6.395 16 C -0.004 4.004 17 N -0.331 5.331 18 C 0.019 3.981 19 C -0.078 4.078 20 C -0.122 4.122 21 C -0.107 4.107 22 C -0.147 4.147 23 C -0.065 4.065 24 C -0.156 4.156 25 C 0.355 3.645 26 O -0.400 6.400 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.298 -27.013 2.440 28.087 hybrid contribution 0.327 0.846 -0.703 1.148 sum -6.971 -26.166 1.737 27.134 Atomic orbital electron populations 1.21863 0.79534 1.03490 1.01957 1.47820 1.06972 1.06245 1.73467 1.21726 0.97553 0.83034 0.99178 1.20885 0.95019 0.89391 0.93101 1.42217 1.67059 1.21636 1.06624 1.19192 1.29485 1.02375 0.85926 0.91222 1.24760 1.01246 0.98057 0.96946 1.69661 1.44978 1.19552 1.23969 0.86159 0.77692 0.79238 0.82915 1.21686 1.21699 1.20751 1.21064 0.88699 0.85604 0.77160 1.90762 1.13646 1.86900 1.48219 1.21240 0.90366 0.83091 1.05741 1.47342 1.45442 1.32965 1.07349 1.20522 0.96168 0.93420 0.87990 1.20452 0.96965 0.95942 0.94444 1.20318 0.96640 0.94830 1.00388 1.21331 0.97464 0.97860 0.94037 1.21134 0.99624 0.99182 0.94784 1.20882 0.92973 0.92252 1.00397 1.20365 1.01286 0.99046 0.94913 1.18228 0.80028 0.81774 0.84469 1.90776 1.61970 1.67415 1.19828 0.92324 0.90211 0.91348 0.90339 0.89751 0.96107 0.96441 0.78238 0.93448 0.86815 0.86645 0.88381 0.88056 0.84979 0.84950 0.84982 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.24 59.85 0.61 1.29 16 2 N -0.61 -8.60 2.87 -181.57 -0.52 -9.12 16 3 C 0.11 1.90 5.52 -4.04 -0.02 1.88 16 4 C 0.14 3.08 6.58 -4.04 -0.03 3.05 16 5 N -0.73 -19.35 5.60 -59.91 -0.34 -19.68 16 6 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 10 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.49 7.46 7.74 -10.99 -0.09 7.38 16 15 O -0.52 -10.54 16.01 5.55 0.09 -10.45 16 16 C 0.12 1.28 5.09 -5.20 -0.03 1.26 16 17 N -0.60 -7.31 2.45 -177.52 -0.44 -7.75 16 18 C 0.14 1.32 7.38 -5.01 -0.04 1.28 16 19 C -0.08 -0.76 6.38 -104.27 -0.66 -1.42 16 20 C -0.10 -0.78 10.03 -39.73 -0.40 -1.18 16 21 C -0.09 -0.60 10.05 -39.44 -0.40 -1.00 16 22 C -0.13 -0.98 10.02 -39.64 -0.40 -1.38 16 23 C -0.05 -0.47 10.10 -39.17 -0.40 -0.86 16 24 C -0.15 -1.87 6.26 -105.05 -0.66 -2.52 16 25 C 0.57 8.35 7.97 -12.62 -0.10 8.25 16 26 O -0.52 -9.43 17.71 5.32 0.09 -9.34 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.07 0.41 6.44 -51.93 -0.33 0.07 16 30 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 31 H 0.08 1.70 7.42 -51.93 -0.39 1.32 16 32 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.11 0.74 7.40 -51.93 -0.38 0.36 16 37 H 0.12 1.11 7.97 -51.93 -0.41 0.69 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -39.29 369.58 -8.70 -47.99 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.02 Total: 4.72 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -2.84 Total: 8.45 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -0.57 Total: -64.73 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: 0.18 Total: -19.79 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.29 -8.70 -47.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753253083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.981 kcal (2) G-P(sol) polarization free energy of solvation -39.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds