Wall clock time and date at job start Tue Mar 31 2020 11:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99905 * 2 1 4 4 C 1.52994 * 109.47069 * 270.00055 * 3 2 1 5 5 N 1.46502 * 109.47057 * 180.02562 * 4 3 2 6 6 C 1.36929 * 120.00020 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00441 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00023 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00090 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00051 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46932 * 90.00274 * 10 8 6 12 12 H 1.48507 * 109.47166 * 210.00190 * 10 8 6 13 13 H 1.48500 * 109.47305 * 329.99851 * 10 8 6 14 14 C 1.34773 * 119.99858 * 180.02562 * 2 1 3 15 15 O 1.21287 * 119.99655 * 180.02562 * 14 2 1 16 16 C 1.50700 * 120.00434 * 359.97438 * 14 2 1 17 17 N 1.46494 * 109.47138 * 179.97438 * 16 14 2 18 18 C 1.46733 * 125.63110 * 269.99944 * 17 16 14 19 19 C 1.50824 * 106.25492 * 179.83437 * 18 17 16 20 20 C 1.37578 * 133.23760 * 179.58426 * 19 18 17 21 21 C 1.38476 * 119.95420 * 180.30433 * 20 19 18 22 22 C 1.38380 * 120.19100 * 0.28122 * 21 20 19 23 23 C 1.37939 * 120.31999 * 359.97161 * 22 21 20 24 24 C 1.39628 * 119.82739 * 0.02562 * 23 22 21 25 25 C 1.34432 * 125.62096 * 90.03291 * 17 16 14 26 26 O 1.21554 * 124.85490 * 359.97438 * 25 17 16 27 27 H 1.08997 * 109.47121 * 269.99637 * 1 2 3 28 28 H 1.08998 * 109.46991 * 30.00258 * 1 2 3 29 29 H 1.08997 * 109.46922 * 149.99911 * 1 2 3 30 30 H 1.08999 * 109.46575 * 30.00102 * 3 2 1 31 31 H 1.08996 * 109.46735 * 149.99924 * 3 2 1 32 32 H 1.09008 * 109.47036 * 299.99916 * 4 3 2 33 33 H 1.08995 * 109.47206 * 59.99562 * 4 3 2 34 34 H 0.97001 * 119.99873 * 359.97438 * 5 4 3 35 35 H 0.97000 * 120.00320 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.46666 * 60.00055 * 16 14 2 37 37 H 1.09001 * 109.47157 * 300.00867 * 16 14 2 38 38 H 1.08996 * 110.09864 * 299.22730 * 18 17 16 39 39 H 1.09000 * 110.09162 * 60.82760 * 18 17 16 40 40 H 1.08002 * 120.02542 * 0.58788 * 20 19 18 41 41 H 1.08001 * 119.89945 * 180.25103 * 21 20 19 42 42 H 1.08002 * 119.84291 * 179.97438 * 22 21 20 43 43 H 1.08004 * 120.08779 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4424 5 7 3.1855 2.9789 -1.4424 6 6 3.5284 3.5715 -2.6283 7 1 3.2581 3.1041 -3.5636 8 6 4.2225 4.7736 -2.6283 9 7 4.5506 5.3441 -1.4885 10 14 4.6896 5.5825 -4.2460 11 1 3.6009 6.4969 -4.6747 12 1 5.9447 6.3562 -4.0684 13 1 4.8947 4.5374 -5.2810 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1671 -0.0001 16 6 1.3854 -2.4723 -0.0005 17 7 2.3375 -3.5858 -0.0018 18 6 2.8920 -4.2349 -1.1951 19 6 3.8202 -5.3138 -0.6959 20 6 4.6095 -6.2456 -1.3298 21 6 5.3676 -7.1320 -0.5834 22 6 5.3296 -7.0876 0.7991 23 6 4.5377 -6.1608 1.4446 24 6 3.7704 -5.2636 0.6990 25 6 2.8466 -4.1817 1.0904 26 8 2.5834 -3.8736 2.2364 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1384 0.5138 32 1 3.0417 0.9507 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 3.4280 3.3989 -0.6024 35 1 5.0359 6.1840 -1.4884 36 1 0.7585 -2.5298 -0.8903 37 1 0.7590 -2.5302 0.8896 38 1 2.0905 -4.6723 -1.7903 39 1 3.4491 -3.5113 -1.7902 40 1 4.6413 -6.2827 -2.4087 41 1 5.9900 -7.8604 -1.0819 42 1 5.9229 -7.7819 1.3757 43 1 4.5112 -6.1292 2.5238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753253083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:12 Heat of formation + Delta-G solvation = -27.008590 kcal Electronic energy + Delta-G solvation = -25658.120424 eV Core-core repulsion = 21896.489180 eV Total energy + Delta-G solvation = -3761.631244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.29409 -40.85933 -39.11909 -37.56612 -37.03981 -36.12326 -33.67610 -32.95990 -32.07634 -30.38326 -28.72580 -27.73608 -27.42301 -25.69259 -24.15679 -23.13249 -22.67449 -21.31521 -20.29321 -19.24949 -18.46278 -18.08904 -17.99889 -17.21757 -17.03144 -16.72090 -16.39247 -16.26192 -15.58733 -15.35360 -15.29728 -15.11980 -14.98171 -14.62305 -14.46017 -14.31202 -14.07259 -14.04769 -13.36050 -13.27284 -13.18063 -13.08754 -12.88709 -12.77790 -12.69303 -12.38677 -12.14916 -12.04909 -11.89853 -11.32513 -11.11270 -11.00193 -10.20851 -9.93075 -9.76092 -9.68723 -9.09956 -7.99993 -5.31507 -0.25156 0.32642 1.39783 1.44888 1.48019 1.49085 1.56567 1.76154 2.06686 2.54225 2.79764 3.07060 3.33277 3.36736 3.44580 3.90005 3.98047 4.05227 4.08057 4.15720 4.16531 4.20765 4.32061 4.36928 4.41891 4.47875 4.50710 4.52383 4.72516 4.76484 4.92845 4.96236 4.97692 5.04823 5.07910 5.35840 5.38305 5.42208 5.45790 5.50488 5.77605 5.90309 6.20981 6.31553 6.90070 7.07482 7.26828 7.98536 8.23310 9.23638 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.002612 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.189828 B =10715.182892 C =11658.802424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.607 5.607 3 C 0.121 3.879 4 C 0.153 3.847 5 N -0.745 5.745 6 C -0.250 4.250 7 H 0.076 0.924 8 C -0.076 4.076 9 N -0.970 5.970 10 Si 0.980 3.020 11 H -0.280 1.280 12 H -0.294 1.294 13 H -0.269 1.269 14 C 0.481 3.519 15 O -0.583 6.583 16 C 0.124 3.876 17 N -0.600 5.600 18 C 0.138 3.862 19 C -0.082 4.082 20 C -0.103 4.103 21 C -0.079 4.079 22 C -0.128 4.128 23 C -0.066 4.066 24 C -0.194 4.194 25 C 0.549 3.451 26 O -0.577 6.577 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.000 1.000 33 H 0.037 0.963 34 H 0.374 0.626 35 H 0.253 0.747 36 H 0.167 0.833 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.093 0.907 40 H 0.163 0.837 41 H 0.169 0.831 42 H 0.159 0.841 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.967 -29.408 -0.649 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.341 5.341 3 C -0.003 4.003 4 C 0.025 3.975 5 N -0.389 5.389 6 C -0.382 4.382 7 H 0.094 0.906 8 C -0.268 4.268 9 N -0.621 5.621 10 Si 0.808 3.192 11 H -0.207 1.207 12 H -0.221 1.221 13 H -0.194 1.194 14 C 0.268 3.732 15 O -0.463 6.463 16 C 0.000 4.000 17 N -0.330 5.330 18 C 0.017 3.983 19 C -0.084 4.084 20 C -0.121 4.121 21 C -0.097 4.097 22 C -0.146 4.146 23 C -0.085 4.085 24 C -0.198 4.198 25 C 0.340 3.660 26 O -0.459 6.459 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.054 0.946 34 H 0.206 0.794 35 H 0.062 0.938 36 H 0.184 0.816 37 H 0.146 0.854 38 H 0.159 0.841 39 H 0.111 0.889 40 H 0.181 0.819 41 H 0.187 0.813 42 H 0.177 0.823 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.596 -29.148 -0.257 30.390 hybrid contribution 0.715 1.411 0.111 1.586 sum -7.881 -27.737 -0.146 28.835 Atomic orbital electron populations 1.22253 0.75887 1.05633 1.03788 1.47925 1.09054 1.04553 1.72526 1.21326 0.97049 0.85374 0.96561 1.20920 0.94478 0.86702 0.95373 1.42438 1.67664 1.23134 1.05632 1.19605 1.29076 1.02590 0.86912 0.90600 1.25683 1.01649 0.98892 1.00599 1.69829 1.46025 1.19903 1.26301 0.85047 0.77097 0.78244 0.78789 1.20678 1.22092 1.19412 1.22017 0.88295 0.87214 0.75629 1.90734 1.16550 1.87858 1.51131 1.21508 0.89816 0.79936 1.08750 1.47582 1.45023 1.32659 1.07711 1.20782 0.97432 0.93066 0.87017 1.20697 0.97591 0.96685 0.93383 1.20754 0.95492 0.93819 1.02055 1.21836 0.96588 0.97608 0.93643 1.21483 0.98821 0.98558 0.95732 1.21071 0.93893 0.93139 1.00382 1.20437 1.02820 0.99913 0.96581 1.18854 0.80233 0.82529 0.84361 1.90714 1.64030 1.69335 1.21772 0.90678 0.89889 0.87429 0.88712 0.93224 0.98191 0.94561 0.79446 0.93790 0.81587 0.85402 0.84103 0.88867 0.81904 0.81306 0.82313 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.24 127.77 1.31 2.29 16 2 N -0.61 -16.65 2.87 -846.76 -2.43 -19.08 16 3 C 0.12 4.36 5.52 86.38 0.48 4.83 16 4 C 0.15 6.56 6.58 86.38 0.57 7.13 16 5 N -0.75 -40.29 5.60 -343.46 -1.92 -42.21 16 6 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 8 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 9 N -0.97 -61.19 13.06 21.65 0.28 -60.91 16 10 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 C 0.48 14.67 7.74 87.66 0.68 15.35 16 15 O -0.58 -24.84 16.01 -3.05 -0.05 -24.89 16 16 C 0.12 2.43 5.09 85.63 0.44 2.86 16 17 N -0.60 -14.42 2.45 -834.01 -2.05 -16.47 16 18 C 0.14 2.37 7.38 85.63 0.63 3.00 16 19 C -0.08 -1.54 6.38 -19.64 -0.13 -1.66 16 20 C -0.10 -1.27 10.03 22.17 0.22 -1.05 16 21 C -0.08 -0.81 10.05 22.36 0.22 -0.59 16 22 C -0.13 -1.73 10.02 22.23 0.22 -1.51 16 23 C -0.07 -1.39 10.10 22.53 0.23 -1.16 16 24 C -0.19 -4.91 6.26 -20.14 -0.13 -5.03 16 25 C 0.55 17.05 7.97 86.75 0.69 17.74 16 26 O -0.58 -22.41 17.71 -3.89 -0.07 -22.48 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.24 8.07 -2.39 -0.02 1.22 16 29 H 0.11 0.79 6.44 -2.39 -0.02 0.77 16 30 H 0.09 3.08 8.07 -2.39 -0.02 3.06 16 31 H 0.05 2.13 7.42 -2.39 -0.02 2.12 16 32 H 0.00 0.00 8.14 -2.38 -0.02 -0.01 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.37 21.39 7.67 -92.71 -0.71 20.68 16 35 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.17 1.44 7.40 -2.38 -0.02 1.42 16 37 H 0.13 2.23 7.97 -2.39 -0.02 2.21 16 38 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 41 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 42 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -91.94 369.58 2.85 -89.09 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.32 Total: 23.52 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 6.74 Total: 24.46 kcal Atomic # 7 Polarization: -132.55 SS G_CDS: -6.12 Total: -138.67 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.12 Total: -47.37 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -91.94 2.85 -89.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753253083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.082 kcal (2) G-P(sol) polarization free energy of solvation -91.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds