Wall clock time and date at job start Tue Mar 31 2020 11:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 119.99827 * 2 1 4 4 O 1.21363 * 120.00164 * 174.47492 * 3 2 1 5 5 C 1.49359 * 119.99951 * 354.47888 * 3 2 1 6 6 O 1.21372 * 119.99779 * 359.59092 * 5 3 2 7 7 N 1.34780 * 119.99826 * 179.59448 * 5 3 2 8 8 C 1.39726 * 119.99837 * 185.09797 * 7 5 3 9 9 C 1.38925 * 120.07693 * 324.58882 * 8 7 5 10 10 C 1.38092 * 119.92477 * 180.02562 * 9 8 7 11 11 C 1.38293 * 120.07503 * 359.97186 * 10 9 8 12 12 C 1.38298 * 120.15111 * 0.02562 * 11 10 9 13 13 C 1.38098 * 120.07672 * 0.02562 * 12 11 10 14 14 C 1.46500 * 120.00220 * 179.97438 * 2 1 3 15 15 H 1.08996 * 110.64190 * 178.31700 * 14 2 1 16 16 C 1.55156 * 110.71896 * 54.97882 * 14 2 1 17 17 C 1.54910 * 101.58183 * 277.13943 * 16 14 2 18 18 N 1.47423 * 104.83164 * 322.98697 * 17 16 14 19 19 C 1.36933 * 125.64882 * 204.15956 * 18 17 16 20 20 H 1.08003 * 119.99886 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00054 * 359.96763 * 19 18 17 22 22 N 1.31616 * 119.99820 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47064 * 89.99647 * 23 21 19 25 25 H 1.48497 * 109.47164 * 209.99808 * 23 21 19 26 26 H 1.48506 * 109.47124 * 329.99974 * 23 21 19 27 27 C 1.47019 * 108.70155 * 24.13275 * 18 17 16 28 28 H 1.08998 * 109.47008 * 84.28515 * 1 2 3 29 29 H 1.09004 * 109.47066 * 204.28142 * 1 2 3 30 30 H 1.08999 * 109.47521 * 324.28331 * 1 2 3 31 31 H 0.96998 * 119.99978 * 5.10193 * 7 5 3 32 32 H 1.08007 * 120.03693 * 0.03564 * 9 8 7 33 33 H 1.08001 * 119.96494 * 180.24737 * 10 9 8 34 34 H 1.08002 * 119.92562 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.95996 * 179.97438 * 12 11 10 36 36 H 1.07994 * 120.03672 * 179.97438 * 13 12 11 37 37 H 1.09007 * 111.00004 * 35.21098 * 16 14 2 38 38 H 1.08993 * 111.00348 * 159.06166 * 16 14 2 39 39 H 1.08998 * 110.36341 * 204.15202 * 17 16 14 40 40 H 1.09003 * 110.46125 * 81.87646 * 17 16 14 41 41 H 0.97002 * 120.00136 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.88332 * 239.51939 * 27 18 17 43 43 H 1.09007 * 109.88452 * 118.35632 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3482 1.1697 0.1012 5 6 1.3972 2.4577 -0.1245 6 8 0.1883 2.4548 -0.2330 7 7 2.0703 3.6253 -0.1162 8 6 1.3710 4.8349 -0.1252 9 6 0.1831 4.9472 -0.8367 10 6 -0.5052 6.1443 -0.8439 11 6 -0.0135 7.2306 -0.1433 12 6 1.1687 7.1223 0.5661 13 6 1.8627 5.9284 0.5767 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0917 -0.0295 16 6 1.7508 -2.1610 -1.1875 17 6 0.4719 -2.8225 -0.6159 18 7 0.7745 -3.0618 0.8069 19 6 0.1821 -4.0073 1.6008 20 1 0.4752 -4.1040 2.6358 21 6 -0.7954 -4.8412 1.0754 22 7 -1.1531 -4.7228 -0.1857 23 14 -1.6031 -6.1314 2.1582 24 1 -2.8027 -5.5488 2.8115 25 1 -2.0076 -7.2930 1.3262 26 1 -0.6411 -6.5780 3.1977 27 6 1.8182 -2.1177 1.2322 28 1 -0.3633 0.1023 -1.0225 29 1 -0.3633 -0.9368 0.4226 30 1 -0.3634 0.8343 0.5999 31 1 3.0403 3.6259 -0.1041 32 1 -0.2017 4.0990 -1.3836 33 1 -1.4308 6.2311 -1.3935 34 1 -0.5540 8.1656 -0.1502 35 1 1.5501 7.9727 1.1118 36 1 2.7860 5.8447 1.1305 37 1 1.5194 -1.5566 -2.0646 38 1 2.5077 -2.9101 -1.4197 39 1 0.2726 -3.7654 -1.1251 40 1 -0.3811 -2.1511 -0.7147 41 1 -1.8364 -5.3053 -0.5528 42 1 2.6909 -2.6654 1.5879 43 1 1.4349 -1.4729 2.0231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753440924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:00 Heat of formation + Delta-G solvation = 17.832206 kcal Electronic energy + Delta-G solvation = -26446.707472 eV Core-core repulsion = 22687.020671 eV Total energy + Delta-G solvation = -3759.686801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22254 -39.70510 -38.37167 -37.51840 -35.39466 -34.18745 -32.08060 -31.15488 -29.99008 -29.31487 -28.09973 -26.48753 -25.23728 -24.04311 -23.10445 -22.20879 -20.61947 -20.20593 -19.25435 -18.14748 -17.49965 -16.94904 -16.91913 -16.31870 -16.14468 -15.50067 -14.89105 -14.75524 -14.49867 -14.19890 -13.93858 -13.80429 -13.60080 -13.12432 -13.05136 -12.83696 -12.30357 -12.24944 -11.92273 -11.76606 -11.63348 -11.49542 -11.18227 -11.12265 -10.93138 -10.88545 -10.59463 -10.33086 -10.14827 -9.92956 -9.61317 -9.26832 -9.09282 -8.69500 -8.51653 -8.36401 -6.90120 -5.70291 -3.12629 0.86683 1.16304 1.52748 2.25835 3.13695 3.37794 3.43240 3.44893 3.46885 3.59439 4.25857 4.45476 4.65807 4.71200 4.92001 5.15768 5.26216 5.30437 5.33245 5.34814 5.42447 5.62383 5.70064 5.75231 5.76889 5.99210 6.03514 6.05755 6.17384 6.22707 6.25008 6.30964 6.43369 6.49021 6.53506 6.63330 6.70829 6.79647 6.96571 7.37852 7.42389 7.57481 7.63474 7.80029 7.98489 8.30001 9.16481 9.76816 10.40404 11.33340 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.002779 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.455316 B =10073.852525 C =10570.313055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.555 5.555 3 C 0.503 3.497 4 O -0.534 6.534 5 C 0.509 3.491 6 O -0.489 6.489 7 N -0.650 5.650 8 C 0.143 3.857 9 C -0.120 4.120 10 C -0.102 4.102 11 C -0.135 4.135 12 C -0.103 4.103 13 C -0.142 4.142 14 C 0.121 3.879 15 H 0.103 0.897 16 C -0.153 4.153 17 C 0.142 3.858 18 N -0.602 5.602 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.915 3.085 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.128 3.872 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.422 0.578 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.025 0.975 41 H 0.253 0.747 42 H 0.037 0.963 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 21.128 -2.280 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.286 5.286 3 C 0.285 3.715 4 O -0.412 6.412 5 C 0.292 3.708 6 O -0.362 6.362 7 N -0.297 5.297 8 C 0.049 3.951 9 C -0.140 4.140 10 C -0.121 4.121 11 C -0.154 4.154 12 C -0.122 4.122 13 C -0.162 4.162 14 C 0.018 3.982 15 H 0.121 0.879 16 C -0.193 4.193 17 C 0.018 3.982 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.001 3.999 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.260 0.740 32 H 0.158 0.842 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.781 20.831 -2.293 21.495 hybrid contribution -0.043 -0.600 0.596 0.847 sum 4.738 20.231 -1.697 20.848 Atomic orbital electron populations 1.22579 0.77119 1.05549 1.02826 1.47776 1.08718 1.04654 1.67408 1.19753 0.87335 0.84814 0.79637 1.90731 1.13404 1.86982 1.50109 1.20486 0.87712 0.85304 0.77343 1.90750 1.13652 1.86782 1.45036 1.43182 1.11374 1.03437 1.71747 1.17786 0.94494 0.85224 0.97611 1.21369 0.95008 0.98778 0.98824 1.21096 0.99647 0.92382 0.98929 1.21182 0.96669 0.98927 0.98604 1.20944 0.95146 0.96978 0.99107 1.20958 1.01889 0.93061 1.00290 1.22378 0.96395 0.81490 0.97957 0.87866 1.23371 1.01787 0.98154 0.95972 1.22176 0.90517 1.00876 0.84668 1.44538 1.42763 1.37651 1.07983 1.19060 1.14991 1.08303 0.92835 0.90456 1.24777 0.99310 0.99869 0.96522 1.69784 1.33942 1.41129 1.12114 0.86068 0.79298 0.80954 0.79131 1.21611 1.21657 1.20719 1.21625 0.93042 0.91424 0.93798 0.92264 0.87774 0.89789 0.74026 0.84150 0.85576 0.85956 0.85617 0.85500 0.91871 0.90601 0.87484 0.95728 0.93664 0.94555 0.95386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 7.52 59.85 0.45 1.50 16 2 N -0.55 -9.44 2.82 -172.38 -0.49 -9.93 16 3 C 0.50 8.01 7.72 -11.63 -0.09 7.92 16 4 O -0.53 -9.04 15.87 5.49 0.09 -8.95 16 5 C 0.51 7.23 7.61 -11.63 -0.09 7.14 16 6 O -0.49 -7.61 10.71 5.48 0.06 -7.55 16 7 N -0.65 -7.51 5.32 -10.30 -0.05 -7.56 16 8 C 0.14 1.59 6.29 -83.75 -0.53 1.07 16 9 C -0.12 -1.38 8.70 -39.38 -0.34 -1.72 16 10 C -0.10 -0.96 10.04 -39.61 -0.40 -1.36 16 11 C -0.14 -1.11 10.04 -39.54 -0.40 -1.50 16 12 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 13 C -0.14 -1.29 9.97 -39.38 -0.39 -1.68 16 14 C 0.12 2.17 3.58 -66.10 -0.24 1.94 16 15 H 0.10 1.79 7.01 -51.93 -0.36 1.42 16 16 C -0.15 -2.84 6.53 -24.58 -0.16 -3.00 16 17 C 0.14 3.26 4.99 -2.53 -0.01 3.24 16 18 N -0.60 -14.74 2.97 -170.07 -0.51 -15.24 16 19 C -0.22 -6.04 10.27 -15.06 -0.15 -6.19 16 20 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -25.97 10.09 55.49 0.56 -25.41 16 23 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.13 2.64 6.29 -3.07 -0.02 2.62 16 28 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.10 2.10 4.77 -51.93 -0.25 1.86 16 30 H 0.08 1.41 5.82 -51.93 -0.30 1.10 16 31 H 0.42 4.11 8.30 -40.82 -0.34 3.78 16 32 H 0.14 1.78 6.23 -52.48 -0.33 1.45 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.11 2.81 5.87 -51.93 -0.31 2.51 16 40 H 0.02 0.59 5.55 -51.93 -0.29 0.30 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.59 8.04 -51.93 -0.42 0.18 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -30.10 346.26 -8.53 -38.63 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.52 Total: 5.76 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -2.86 Total: 8.38 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.49 Total: -58.14 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.15 Total: -16.50 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.10 -8.53 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753440924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.463 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds