Wall clock time and date at job start Tue Mar 31 2020 11:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 119.99827 * 2 1 4 4 O 1.21363 * 120.00164 * 174.47492 * 3 2 1 5 5 C 1.49359 * 119.99951 * 354.47888 * 3 2 1 6 6 O 1.21372 * 119.99779 * 359.59092 * 5 3 2 7 7 N 1.34780 * 119.99826 * 179.59448 * 5 3 2 8 8 C 1.39726 * 119.99837 * 185.09797 * 7 5 3 9 9 C 1.38925 * 120.07693 * 324.58882 * 8 7 5 10 10 C 1.38092 * 119.92477 * 180.02562 * 9 8 7 11 11 C 1.38293 * 120.07503 * 359.97186 * 10 9 8 12 12 C 1.38298 * 120.15111 * 0.02562 * 11 10 9 13 13 C 1.38098 * 120.07672 * 0.02562 * 12 11 10 14 14 C 1.46500 * 120.00220 * 179.97438 * 2 1 3 15 15 H 1.08996 * 110.64190 * 178.31700 * 14 2 1 16 16 C 1.55156 * 110.71896 * 54.97882 * 14 2 1 17 17 C 1.54910 * 101.58183 * 277.13943 * 16 14 2 18 18 N 1.47423 * 104.83164 * 322.98697 * 17 16 14 19 19 C 1.36933 * 125.64882 * 204.15956 * 18 17 16 20 20 H 1.08003 * 119.99886 * 179.97438 * 19 18 17 21 21 C 1.38812 * 120.00054 * 359.96763 * 19 18 17 22 22 N 1.31616 * 119.99820 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47064 * 89.99647 * 23 21 19 25 25 H 1.48497 * 109.47164 * 209.99808 * 23 21 19 26 26 H 1.48506 * 109.47124 * 329.99974 * 23 21 19 27 27 C 1.47019 * 108.70155 * 24.13275 * 18 17 16 28 28 H 1.08998 * 109.47008 * 84.28515 * 1 2 3 29 29 H 1.09004 * 109.47066 * 204.28142 * 1 2 3 30 30 H 1.08999 * 109.47521 * 324.28331 * 1 2 3 31 31 H 0.96998 * 119.99978 * 5.10193 * 7 5 3 32 32 H 1.08007 * 120.03693 * 0.03564 * 9 8 7 33 33 H 1.08001 * 119.96494 * 180.24737 * 10 9 8 34 34 H 1.08002 * 119.92562 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.95996 * 179.97438 * 12 11 10 36 36 H 1.07994 * 120.03672 * 179.97438 * 13 12 11 37 37 H 1.09007 * 111.00004 * 35.21098 * 16 14 2 38 38 H 1.08993 * 111.00348 * 159.06166 * 16 14 2 39 39 H 1.08998 * 110.36341 * 204.15202 * 17 16 14 40 40 H 1.09003 * 110.46125 * 81.87646 * 17 16 14 41 41 H 0.97002 * 120.00136 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.88332 * 239.51939 * 27 18 17 43 43 H 1.09007 * 109.88452 * 118.35632 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3482 1.1697 0.1012 5 6 1.3972 2.4577 -0.1245 6 8 0.1883 2.4548 -0.2330 7 7 2.0703 3.6253 -0.1162 8 6 1.3710 4.8349 -0.1252 9 6 0.1831 4.9472 -0.8367 10 6 -0.5052 6.1443 -0.8439 11 6 -0.0135 7.2306 -0.1433 12 6 1.1687 7.1223 0.5661 13 6 1.8627 5.9284 0.5767 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0917 -0.0295 16 6 1.7508 -2.1610 -1.1875 17 6 0.4719 -2.8225 -0.6159 18 7 0.7745 -3.0618 0.8069 19 6 0.1821 -4.0073 1.6008 20 1 0.4752 -4.1040 2.6358 21 6 -0.7954 -4.8412 1.0754 22 7 -1.1531 -4.7228 -0.1857 23 14 -1.6031 -6.1314 2.1582 24 1 -2.8027 -5.5488 2.8115 25 1 -2.0076 -7.2930 1.3262 26 1 -0.6411 -6.5780 3.1977 27 6 1.8182 -2.1177 1.2322 28 1 -0.3633 0.1023 -1.0225 29 1 -0.3633 -0.9368 0.4226 30 1 -0.3634 0.8343 0.5999 31 1 3.0403 3.6259 -0.1041 32 1 -0.2017 4.0990 -1.3836 33 1 -1.4308 6.2311 -1.3935 34 1 -0.5540 8.1656 -0.1502 35 1 1.5501 7.9727 1.1118 36 1 2.7860 5.8447 1.1305 37 1 1.5194 -1.5566 -2.0646 38 1 2.5077 -2.9101 -1.4197 39 1 0.2726 -3.7654 -1.1251 40 1 -0.3811 -2.1511 -0.7147 41 1 -1.8364 -5.3053 -0.5528 42 1 2.6909 -2.6654 1.5879 43 1 1.4349 -1.4729 2.0231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753440924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:00 Heat of formation + Delta-G solvation = -0.179719 kcal Electronic energy + Delta-G solvation = -26447.488527 eV Core-core repulsion = 22687.020671 eV Total energy + Delta-G solvation = -3760.467857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.35531 -40.83777 -39.45123 -38.93713 -36.57416 -35.57412 -33.91730 -31.85203 -31.17940 -30.75489 -29.72477 -27.89388 -26.82110 -25.56732 -23.89244 -23.14881 -22.09688 -21.69604 -20.59238 -19.26359 -18.95399 -18.46860 -18.11269 -17.39965 -17.23120 -16.71629 -16.60534 -15.89966 -15.78239 -15.61348 -15.07826 -14.95000 -14.67780 -14.42866 -14.25395 -13.91181 -13.79726 -13.73259 -13.46370 -13.34752 -12.96969 -12.79384 -12.69993 -12.47902 -12.36615 -12.21515 -12.03863 -11.95956 -11.80948 -11.45588 -11.44368 -10.72961 -10.42656 -9.89246 -9.86653 -9.23183 -8.88058 -7.76194 -5.20318 -0.08473 0.46071 0.54323 1.12134 1.48683 1.49322 1.58013 1.95616 2.29350 2.50316 2.86433 3.11124 3.34444 3.67064 3.79282 3.93256 3.99200 4.06522 4.22224 4.25456 4.31414 4.46597 4.53367 4.56400 4.61748 4.62537 4.65351 4.86386 4.92810 4.99647 5.05598 5.11558 5.23358 5.29662 5.33557 5.48710 5.52387 5.61728 5.64175 5.82403 5.88800 6.05761 6.11937 6.32107 6.53129 6.76632 7.11958 7.77638 8.40772 9.25038 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.002779 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.455316 B =10073.852525 C =10570.313055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.561 5.561 3 C 0.508 3.492 4 O -0.540 6.540 5 C 0.511 3.489 6 O -0.508 6.508 7 N -0.634 5.634 8 C 0.117 3.883 9 C -0.141 4.141 10 C -0.111 4.111 11 C -0.131 4.131 12 C -0.102 4.102 13 C -0.141 4.141 14 C 0.134 3.866 15 H 0.119 0.881 16 C -0.138 4.138 17 C 0.147 3.853 18 N -0.619 5.619 19 C -0.237 4.237 20 H 0.078 0.922 21 C -0.061 4.061 22 N -0.944 5.944 23 Si 0.977 3.023 24 H -0.289 1.289 25 H -0.294 1.294 26 H -0.272 1.272 27 C 0.127 3.873 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.430 0.570 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.012 0.988 41 H 0.247 0.753 42 H 0.043 0.957 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.198 23.516 -1.640 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.293 5.293 3 C 0.291 3.709 4 O -0.419 6.419 5 C 0.293 3.707 6 O -0.383 6.383 7 N -0.281 5.281 8 C 0.024 3.976 9 C -0.162 4.162 10 C -0.130 4.130 11 C -0.150 4.150 12 C -0.121 4.121 13 C -0.161 4.161 14 C 0.030 3.970 15 H 0.137 0.863 16 C -0.177 4.177 17 C 0.023 3.977 18 N -0.346 5.346 19 C -0.366 4.366 20 H 0.096 0.904 21 C -0.254 4.254 22 N -0.594 5.594 23 Si 0.806 3.194 24 H -0.216 1.216 25 H -0.220 1.220 26 H -0.197 1.197 27 C 0.001 3.999 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.270 0.730 32 H 0.138 0.862 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.030 0.970 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 5.843 23.269 -1.645 24.048 hybrid contribution -0.334 -1.184 0.420 1.300 sum 5.509 22.085 -1.226 22.795 Atomic orbital electron populations 1.22325 0.77369 1.03842 1.02827 1.47742 1.08475 1.04842 1.68197 1.20000 0.87228 0.85038 0.78683 1.90722 1.13755 1.87209 1.50190 1.20120 0.87374 0.85368 0.77814 1.90749 1.14231 1.86891 1.46385 1.43041 1.11728 1.02943 1.70436 1.17998 0.94975 0.85466 0.99193 1.21362 0.95862 0.99171 0.99761 1.21330 1.00137 0.92144 0.99385 1.21564 0.96701 0.99413 0.97279 1.21366 0.94729 0.97399 0.98568 1.21242 1.02562 0.92636 0.99631 1.22190 0.97131 0.81529 0.96115 0.86307 1.23217 0.99606 0.98334 0.96580 1.21951 0.92415 0.99238 0.84129 1.44739 1.43408 1.37909 1.08534 1.19375 1.15125 1.08773 0.93303 0.90390 1.25537 1.00197 1.01909 0.97778 1.70024 1.34235 1.41753 1.13391 0.85101 0.78301 0.78380 0.77646 1.21575 1.22022 1.19682 1.21714 0.92116 0.91121 0.94930 0.91923 0.90875 0.89344 0.73041 0.86165 0.84269 0.83239 0.82594 0.83549 0.90107 0.89705 0.90945 0.96980 0.94309 0.93930 0.95918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.73 7.52 127.77 0.96 3.70 16 2 N -0.56 -18.77 2.82 -817.65 -2.31 -21.08 16 3 C 0.51 15.64 7.72 87.24 0.67 16.31 16 4 O -0.54 -17.37 15.87 -3.29 -0.05 -17.42 16 5 C 0.51 14.21 7.61 87.24 0.66 14.87 16 6 O -0.51 -15.84 10.71 -3.32 -0.04 -15.87 16 7 N -0.63 -13.96 5.32 -304.84 -1.62 -15.58 16 8 C 0.12 2.47 6.29 38.21 0.24 2.71 16 9 C -0.14 -3.20 8.70 22.40 0.19 -3.01 16 10 C -0.11 -1.95 10.04 22.25 0.22 -1.73 16 11 C -0.13 -1.76 10.04 22.30 0.22 -1.54 16 12 C -0.10 -1.30 10.04 22.25 0.22 -1.07 16 13 C -0.14 -2.21 9.97 22.40 0.22 -1.98 16 14 C 0.13 4.68 3.58 46.18 0.17 4.84 16 15 H 0.12 3.87 7.01 -2.39 -0.02 3.85 16 16 C -0.14 -5.03 6.53 31.99 0.21 -4.82 16 17 C 0.15 6.91 4.99 86.86 0.43 7.34 16 18 N -0.62 -30.79 2.97 -691.99 -2.06 -32.85 16 19 C -0.24 -12.98 10.27 84.03 0.86 -12.12 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 21 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 22 N -0.94 -54.75 10.09 21.65 0.22 -54.53 16 23 Si 0.98 45.15 29.55 68.60 2.03 47.18 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 C 0.13 5.23 6.29 86.73 0.55 5.78 16 28 H 0.06 2.11 8.13 -2.39 -0.02 2.09 16 29 H 0.07 3.04 4.77 -2.39 -0.01 3.03 16 30 H 0.09 3.00 5.82 -2.39 -0.01 2.99 16 31 H 0.43 7.73 8.30 -92.71 -0.77 6.96 16 32 H 0.12 3.15 6.23 -2.91 -0.02 3.13 16 33 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 38 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.07 3.94 5.87 -2.39 -0.01 3.93 16 40 H 0.01 0.61 5.55 -2.39 -0.01 0.59 16 41 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 43 H 0.02 0.96 8.04 -2.38 -0.02 0.94 16 Total: -1.00 -65.53 346.26 2.76 -62.77 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.28 Total: 21.05 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 6.31 Total: 26.35 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -5.77 Total: -124.05 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.09 Total: -33.30 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.53 2.76 -62.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753440924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.591 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds