Wall clock time and date at job start Tue Mar 31 2020 11:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21286 * 119.99977 * 2 1 4 4 N 1.34778 * 120.00402 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00512 * 180.02562 * 4 2 1 6 6 C 1.50698 * 109.47138 * 179.97438 * 5 4 2 7 7 C 1.38262 * 119.99774 * 90.00219 * 6 5 4 8 8 C 1.38218 * 120.00246 * 180.02562 * 7 6 5 9 9 C 1.38174 * 120.02734 * 359.97438 * 8 7 6 10 10 C 1.38440 * 119.97532 * 0.02562 * 9 8 7 11 11 C 1.38179 * 119.96418 * 359.95637 * 10 9 8 12 12 C 1.51179 * 108.25580 * 179.97438 * 10 9 8 13 13 N 1.48050 * 105.67744 * 342.50672 * 12 10 9 14 14 C 1.46897 * 111.00219 * 146.96014 * 13 12 10 15 15 C 1.50702 * 109.47134 * 175.12230 * 14 13 12 16 16 O 1.21292 * 119.99899 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00422 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00340 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99944 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99821 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99952 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00412 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47171 * 89.99613 * 22 20 18 24 24 H 1.48502 * 109.47336 * 210.00110 * 22 20 18 25 25 H 1.48504 * 109.46856 * 329.99893 * 22 20 18 26 26 C 1.48056 * 103.88562 * 27.59793 * 13 12 10 27 27 H 1.09001 * 109.47426 * 270.00047 * 1 2 3 28 28 H 1.09010 * 109.47211 * 30.00009 * 1 2 3 29 29 H 1.08996 * 109.47387 * 149.99365 * 1 2 3 30 30 H 0.97004 * 119.99220 * 359.97438 * 4 2 1 31 31 H 1.08999 * 109.47157 * 59.99860 * 5 4 2 32 32 H 1.08995 * 109.47220 * 300.00182 * 5 4 2 33 33 H 1.08000 * 119.99736 * 359.97438 * 7 6 5 34 34 H 1.08003 * 119.98431 * 179.97438 * 8 7 6 35 35 H 1.08003 * 119.99156 * 179.97438 * 11 10 9 36 36 H 1.08997 * 110.21313 * 223.44884 * 12 10 9 37 37 H 1.09005 * 110.20660 * 101.55399 * 12 10 9 38 38 H 1.09000 * 109.47731 * 295.12068 * 14 13 12 39 39 H 1.09001 * 109.47355 * 55.12212 * 14 13 12 40 40 H 0.97002 * 119.99324 * 0.02562 * 17 15 14 41 41 H 0.96998 * 120.00244 * 179.97438 * 21 20 18 42 42 H 1.09002 * 110.20516 * 91.44420 * 26 13 12 43 43 H 1.08996 * 110.21030 * 213.34217 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1481 -2.5880 -0.0001 7 6 4.3791 -3.2394 -1.1975 8 6 4.8393 -4.5428 -1.1978 9 6 5.0693 -5.1950 -0.0016 10 6 4.8381 -4.5429 1.1975 11 6 4.3784 -3.2398 1.1969 12 6 5.1725 -5.4925 2.3253 13 7 5.1953 -6.8425 1.7180 14 6 6.1910 -7.6990 2.3760 15 6 6.1026 -9.0947 1.8144 16 8 5.2897 -9.3508 0.9513 17 7 6.9260 -10.0587 2.2719 18 6 6.8459 -11.3282 1.7606 19 1 6.1227 -11.5560 0.9915 20 6 7.6952 -12.3218 2.2319 21 7 7.6181 -13.5388 1.7422 22 14 8.9456 -11.9280 3.5627 23 1 8.3378 -12.1604 4.8974 24 1 10.1337 -12.8040 3.4004 25 1 9.3594 -10.5064 3.4480 26 6 5.5622 -6.5908 0.3059 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5139 30 1 1.6958 -2.0072 -0.0005 31 1 4.0088 -0.6539 0.8905 32 1 4.0095 -0.6528 -0.8894 33 1 4.1990 -2.7302 -2.1328 34 1 5.0191 -5.0515 -2.1333 35 1 4.1975 -2.7307 2.1321 36 1 4.4078 -5.4410 3.1002 37 1 6.1499 -5.2512 2.7433 38 1 7.1890 -7.2986 2.1984 39 1 5.9957 -7.7257 3.4480 40 1 7.5753 -9.8541 2.9629 41 1 8.2113 -14.2324 2.0710 42 1 6.6439 -6.6437 0.1828 43 1 5.0726 -7.3150 -0.3452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755100190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:08 Heat of formation + Delta-G solvation = -26.823279 kcal Electronic energy + Delta-G solvation = -24996.697879 eV Core-core repulsion = 21235.074671 eV Total energy + Delta-G solvation = -3761.623208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.70769 -39.81925 -38.53640 -37.04337 -34.94679 -33.96690 -32.11528 -31.73121 -31.53632 -30.25019 -28.02825 -27.62624 -25.51633 -24.29449 -22.56632 -21.32189 -20.97982 -20.74519 -19.40111 -18.34392 -17.34197 -16.63845 -16.45836 -16.12285 -15.99377 -15.56474 -15.25951 -14.93241 -14.68903 -14.31515 -13.89411 -13.77462 -13.65793 -13.29382 -13.18198 -13.11337 -12.97482 -12.66709 -12.56705 -12.33775 -12.28774 -12.14383 -11.90521 -11.45774 -11.34330 -11.11386 -10.96512 -10.62754 -10.32643 -10.00753 -9.59899 -9.47739 -9.11170 -9.00072 -8.57259 -8.21909 -8.09127 -6.34020 -3.85671 0.97455 1.16202 2.28658 2.91319 2.99410 3.04228 3.12664 3.57398 3.67762 3.83952 4.07363 4.13737 4.38177 4.48122 4.52700 4.70654 4.78092 4.83320 4.95262 5.02716 5.15505 5.17580 5.24345 5.29706 5.35503 5.45565 5.46743 5.50561 5.57575 5.62145 5.78137 5.86010 5.87925 6.00585 6.04486 6.17900 6.27529 6.45400 6.73484 6.85673 6.94821 7.13142 7.54533 7.84860 8.10504 8.56453 8.91813 9.38773 9.78832 10.78984 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037843 B = 0.002048 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.723656 B =13669.568207 C =13811.184558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.551 6.551 4 N -0.726 5.726 5 C 0.165 3.835 6 C -0.118 4.118 7 C -0.098 4.098 8 C -0.102 4.102 9 C -0.080 4.080 10 C -0.103 4.103 11 C -0.080 4.080 12 C 0.072 3.928 13 N -0.477 5.477 14 C 0.031 3.969 15 C 0.452 3.548 16 O -0.559 6.559 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.880 5.880 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.077 3.923 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.404 0.596 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.370 0.630 41 H 0.274 0.726 42 H 0.061 0.939 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 24.170 -0.607 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.296 3.704 3 O -0.429 6.429 4 N -0.379 5.379 5 C 0.042 3.958 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.121 4.121 9 C -0.081 4.081 10 C -0.103 4.103 11 C -0.099 4.099 12 C -0.055 4.055 13 N -0.200 5.200 14 C -0.101 4.101 15 C 0.238 3.762 16 O -0.440 6.440 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.138 0.862 20 C -0.162 4.162 21 N -0.520 5.520 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.050 4.050 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.239 0.761 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.829 24.220 -1.132 25.480 hybrid contribution 1.746 -0.046 1.070 2.049 sum -6.083 24.175 -0.062 24.928 Atomic orbital electron populations 1.21888 0.91530 1.04961 1.04895 1.20866 0.90693 0.83365 0.75441 1.90732 1.70875 1.31458 1.49795 1.46237 1.07124 1.09015 1.75542 1.20127 0.79854 0.92792 1.03051 1.19638 1.03336 0.95511 0.93357 1.20956 0.98912 0.94350 0.97410 1.20523 0.99819 0.94437 0.97278 1.20869 0.97347 0.96338 0.93576 1.20579 0.99727 0.94233 0.95810 1.20313 0.98889 0.93143 0.97596 1.21705 1.01131 0.87135 0.95545 1.65023 1.44914 1.08423 1.01668 1.22215 0.93795 0.94057 1.00012 1.19523 0.84660 0.85557 0.86479 1.90559 1.38195 1.81946 1.33312 1.42191 1.33594 1.10173 1.37032 1.19418 1.19963 0.82868 1.21077 0.86240 1.25041 0.97942 0.95143 0.98038 1.69620 1.38644 1.01423 1.42352 0.86673 0.81790 0.78435 0.82482 1.19572 1.20175 1.19567 1.21745 0.99149 0.92510 0.91565 0.88769 0.88864 0.90063 0.76113 0.90687 0.90604 0.85661 0.85553 0.85953 0.88984 0.92140 0.92741 0.88628 0.79713 0.91588 0.92148 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.30 36.00 0.37 -0.44 16 2 C 0.51 4.37 7.94 -10.99 -0.09 4.29 16 3 O -0.55 -7.22 17.10 5.55 0.09 -7.13 16 4 N -0.73 -5.23 5.55 -61.48 -0.34 -5.57 16 5 C 0.16 1.33 5.80 -5.20 -0.03 1.30 16 6 C -0.12 -1.03 5.25 -104.62 -0.55 -1.58 16 7 C -0.10 -0.88 9.70 -39.58 -0.38 -1.27 16 8 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 9 C -0.08 -1.03 6.26 -104.33 -0.65 -1.68 16 10 C -0.10 -1.20 6.26 -104.33 -0.65 -1.85 16 11 C -0.08 -0.77 9.70 -39.61 -0.38 -1.15 16 12 C 0.07 0.87 6.61 -4.11 -0.03 0.84 16 13 N -0.48 -7.51 5.17 -236.36 -1.22 -8.73 16 14 C 0.03 0.50 5.12 -4.98 -0.03 0.47 16 15 C 0.45 10.00 7.58 -10.98 -0.08 9.91 16 16 O -0.56 -14.59 14.65 5.55 0.08 -14.51 16 17 N -0.59 -13.73 5.09 -10.96 -0.06 -13.78 16 18 C -0.30 -8.47 10.16 -14.94 -0.15 -8.62 16 19 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.42 13.96 55.50 0.77 -24.64 16 22 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 26 C 0.08 1.19 5.68 -4.10 -0.02 1.16 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.40 2.20 8.46 -40.82 -0.35 1.85 16 31 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.64 7.81 -51.93 -0.41 0.23 16 38 H 0.05 0.76 7.82 -51.93 -0.41 0.36 16 39 H 0.10 1.32 8.13 -51.93 -0.42 0.89 16 40 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.06 0.90 7.61 -51.93 -0.40 0.51 16 43 H 0.11 1.93 7.37 -51.93 -0.38 1.54 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -34.94 363.47 -9.03 -43.96 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.95 Total: 9.69 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -3.18 Total: 0.91 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.84 Total: -52.72 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.18 Total: -21.64 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.94 -9.03 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755100190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.141 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds