Wall clock time and date at job start Tue Mar 31 2020 11:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21286 * 119.99977 * 2 1 4 4 N 1.34778 * 120.00402 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00512 * 180.02562 * 4 2 1 6 6 C 1.50698 * 109.47138 * 179.97438 * 5 4 2 7 7 C 1.38262 * 119.99774 * 90.00219 * 6 5 4 8 8 C 1.38218 * 120.00246 * 180.02562 * 7 6 5 9 9 C 1.38174 * 120.02734 * 359.97438 * 8 7 6 10 10 C 1.38440 * 119.97532 * 0.02562 * 9 8 7 11 11 C 1.38179 * 119.96418 * 359.95637 * 10 9 8 12 12 C 1.51179 * 108.25580 * 179.97438 * 10 9 8 13 13 N 1.48050 * 105.67744 * 342.50672 * 12 10 9 14 14 C 1.46897 * 111.00219 * 146.96014 * 13 12 10 15 15 C 1.50702 * 109.47134 * 175.12230 * 14 13 12 16 16 O 1.21292 * 119.99899 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00422 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00340 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99944 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99821 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99952 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00412 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47171 * 89.99613 * 22 20 18 24 24 H 1.48502 * 109.47336 * 210.00110 * 22 20 18 25 25 H 1.48504 * 109.46856 * 329.99893 * 22 20 18 26 26 C 1.48056 * 103.88562 * 27.59793 * 13 12 10 27 27 H 1.09001 * 109.47426 * 270.00047 * 1 2 3 28 28 H 1.09010 * 109.47211 * 30.00009 * 1 2 3 29 29 H 1.08996 * 109.47387 * 149.99365 * 1 2 3 30 30 H 0.97004 * 119.99220 * 359.97438 * 4 2 1 31 31 H 1.08999 * 109.47157 * 59.99860 * 5 4 2 32 32 H 1.08995 * 109.47220 * 300.00182 * 5 4 2 33 33 H 1.08000 * 119.99736 * 359.97438 * 7 6 5 34 34 H 1.08003 * 119.98431 * 179.97438 * 8 7 6 35 35 H 1.08003 * 119.99156 * 179.97438 * 11 10 9 36 36 H 1.08997 * 110.21313 * 223.44884 * 12 10 9 37 37 H 1.09005 * 110.20660 * 101.55399 * 12 10 9 38 38 H 1.09000 * 109.47731 * 295.12068 * 14 13 12 39 39 H 1.09001 * 109.47355 * 55.12212 * 14 13 12 40 40 H 0.97002 * 119.99324 * 0.02562 * 17 15 14 41 41 H 0.96998 * 120.00244 * 179.97438 * 21 20 18 42 42 H 1.09002 * 110.20516 * 91.44420 * 26 13 12 43 43 H 1.08996 * 110.21030 * 213.34217 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1481 -2.5880 -0.0001 7 6 4.3791 -3.2394 -1.1975 8 6 4.8393 -4.5428 -1.1978 9 6 5.0693 -5.1950 -0.0016 10 6 4.8381 -4.5429 1.1975 11 6 4.3784 -3.2398 1.1969 12 6 5.1725 -5.4925 2.3253 13 7 5.1953 -6.8425 1.7180 14 6 6.1910 -7.6990 2.3760 15 6 6.1026 -9.0947 1.8144 16 8 5.2897 -9.3508 0.9513 17 7 6.9260 -10.0587 2.2719 18 6 6.8459 -11.3282 1.7606 19 1 6.1227 -11.5560 0.9915 20 6 7.6952 -12.3218 2.2319 21 7 7.6181 -13.5388 1.7422 22 14 8.9456 -11.9280 3.5627 23 1 8.3378 -12.1604 4.8974 24 1 10.1337 -12.8040 3.4004 25 1 9.3594 -10.5064 3.4480 26 6 5.5622 -6.5908 0.3059 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5139 30 1 1.6958 -2.0072 -0.0005 31 1 4.0088 -0.6539 0.8905 32 1 4.0095 -0.6528 -0.8894 33 1 4.1990 -2.7302 -2.1328 34 1 5.0191 -5.0515 -2.1333 35 1 4.1975 -2.7307 2.1321 36 1 4.4078 -5.4410 3.1002 37 1 6.1499 -5.2512 2.7433 38 1 7.1890 -7.2986 2.1984 39 1 5.9957 -7.7257 3.4480 40 1 7.5753 -9.8541 2.9629 41 1 8.2113 -14.2324 2.0710 42 1 6.6439 -6.6437 0.1828 43 1 5.0726 -7.3150 -0.3452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755100190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:07 Heat of formation + Delta-G solvation = -54.601707 kcal Electronic energy + Delta-G solvation = -24997.902442 eV Core-core repulsion = 21235.074671 eV Total energy + Delta-G solvation = -3762.827771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63403 -40.61066 -40.09370 -38.14792 -36.03299 -35.65092 -33.77438 -32.91265 -32.49395 -30.88543 -29.05004 -28.71427 -26.78622 -25.60807 -23.65279 -22.30771 -21.63763 -21.54223 -21.25988 -20.21646 -18.02515 -17.80378 -17.37356 -17.11973 -17.09794 -16.84922 -16.34021 -16.08700 -15.80420 -15.54064 -15.15550 -14.86558 -14.74262 -14.49860 -14.37471 -14.02601 -13.98250 -13.78608 -13.68160 -13.36771 -13.12490 -13.02366 -13.00321 -12.88562 -12.51110 -12.40591 -12.20102 -11.97901 -11.78416 -11.50451 -11.05989 -10.46459 -10.24784 -10.14303 -9.95159 -9.80296 -9.17043 -8.41151 -6.02176 0.15981 0.37831 1.30163 1.35969 1.44667 1.65160 1.94533 2.23114 2.27587 2.57313 2.82339 3.11426 3.17613 3.36495 3.52368 3.72901 3.98454 4.04124 4.08778 4.17599 4.29796 4.34668 4.42436 4.46891 4.50083 4.52935 4.59174 4.65894 4.70054 4.72637 4.85639 4.99603 5.08373 5.11681 5.34322 5.40668 5.49360 5.51724 5.53625 5.76267 5.86086 5.94119 5.97876 6.56351 6.59303 6.88125 7.24647 7.39146 7.96233 8.76412 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037843 B = 0.002048 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.723656 B =13669.568207 C =13811.184558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.505 3.495 3 O -0.602 6.602 4 N -0.717 5.717 5 C 0.168 3.832 6 C -0.105 4.105 7 C -0.093 4.093 8 C -0.110 4.110 9 C -0.105 4.105 10 C -0.109 4.109 11 C -0.076 4.076 12 C 0.076 3.924 13 N -0.505 5.505 14 C 0.044 3.956 15 C 0.451 3.549 16 O -0.608 6.608 17 N -0.591 5.591 18 C -0.327 4.327 19 H 0.055 0.945 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.256 1.256 24 H -0.276 1.276 25 H -0.231 1.231 26 C 0.081 3.919 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.415 0.585 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.130 0.870 35 H 0.144 0.856 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.056 0.944 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 27.207 1.792 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.294 3.706 3 O -0.484 6.484 4 N -0.370 5.370 5 C 0.045 3.955 6 C -0.105 4.105 7 C -0.112 4.112 8 C -0.128 4.128 9 C -0.106 4.106 10 C -0.109 4.109 11 C -0.095 4.095 12 C -0.051 4.051 13 N -0.229 5.229 14 C -0.088 4.088 15 C 0.239 3.761 16 O -0.492 6.492 17 N -0.233 5.233 18 C -0.456 4.456 19 H 0.073 0.927 20 C -0.215 4.215 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.181 1.181 24 H -0.201 1.201 25 H -0.154 1.154 26 C -0.046 4.046 27 H 0.127 0.873 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.251 0.749 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.164 0.836 34 H 0.148 0.852 35 H 0.162 0.838 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.148 0.852 40 H 0.226 0.774 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.208 27.261 1.272 28.227 hybrid contribution 1.406 -0.977 0.184 1.722 sum -5.802 26.285 1.456 26.957 Atomic orbital electron populations 1.21907 0.88430 1.06096 1.06157 1.21547 0.92184 0.82684 0.74154 1.90712 1.72131 1.33203 1.52307 1.46182 1.06817 1.09337 1.74623 1.20051 0.80445 0.92051 1.02998 1.19707 1.02204 0.95539 0.93081 1.21167 0.97880 0.93537 0.98571 1.20688 0.99937 0.95229 0.96978 1.20750 0.99535 0.95287 0.95057 1.20645 1.00270 0.94971 0.95062 1.20509 0.97921 0.92319 0.98763 1.21756 1.02854 0.84831 0.95623 1.64906 1.45196 1.10841 1.01930 1.22136 0.95743 0.89664 1.01210 1.20797 0.82691 0.87666 0.84990 1.90546 1.39930 1.83340 1.35338 1.42006 1.34744 1.08767 1.37762 1.18982 1.19867 0.85739 1.21035 0.92714 1.26126 1.00198 0.94237 1.00898 1.69806 1.40172 1.03032 1.44507 0.85360 0.77632 0.80364 0.78128 1.18077 1.20141 1.15390 1.21515 0.98537 0.93329 0.91263 0.87309 0.88942 0.87733 0.74852 0.90795 0.90784 0.83594 0.85167 0.83812 0.87537 0.89922 0.89709 0.85192 0.77448 0.91166 0.92573 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.30 71.23 0.73 -0.41 16 2 C 0.51 7.75 7.94 87.65 0.70 8.44 16 3 O -0.60 -15.28 17.10 -3.05 -0.05 -15.33 16 4 N -0.72 -8.55 5.55 -466.81 -2.59 -11.14 16 5 C 0.17 2.32 5.80 85.63 0.50 2.81 16 6 C -0.10 -1.56 5.25 -19.86 -0.10 -1.66 16 7 C -0.09 -1.49 9.70 22.27 0.22 -1.27 16 8 C -0.11 -2.28 10.04 22.25 0.22 -2.06 16 9 C -0.11 -2.64 6.26 -19.68 -0.12 -2.76 16 10 C -0.11 -2.30 6.26 -19.68 -0.12 -2.42 16 11 C -0.08 -1.23 9.70 22.25 0.22 -1.02 16 12 C 0.08 1.59 6.61 85.49 0.56 2.16 16 13 N -0.51 -15.34 5.17 -901.70 -4.66 -19.99 16 14 C 0.04 1.31 5.12 85.56 0.44 1.74 16 15 C 0.45 20.14 7.58 87.66 0.66 20.80 16 16 O -0.61 -33.56 14.65 -3.07 -0.04 -33.61 16 17 N -0.59 -27.46 5.09 -306.99 -1.56 -29.02 16 18 C -0.33 -19.03 10.16 84.04 0.85 -18.18 16 19 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 20 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 21 N -0.93 -56.14 13.96 21.66 0.30 -55.83 16 22 Si 0.97 38.23 27.74 68.60 1.90 40.13 16 23 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 24 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16 26 C 0.08 2.55 5.68 85.49 0.49 3.03 16 27 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.41 3.29 8.46 -92.71 -0.78 2.50 16 31 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 32 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.38 7.81 -2.38 -0.02 1.37 16 38 H 0.09 2.07 7.82 -2.39 -0.02 2.05 16 39 H 0.13 3.04 8.13 -2.39 -0.02 3.02 16 40 H 0.39 14.83 5.76 -92.71 -0.53 14.29 16 41 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.06 1.72 7.61 -2.39 -0.02 1.70 16 43 H 0.07 2.58 7.37 -2.39 -0.02 2.56 16 Total: -1.00 -83.74 363.47 -1.32 -85.07 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.33 Total: 30.94 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.71 Total: 8.79 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -8.51 Total: -115.99 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.10 Total: -48.94 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.13 kcal Total: -83.74 -1.32 -85.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755100190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.464 kcal (2) G-P(sol) polarization free energy of solvation -83.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds