Wall clock time and date at job start Tue Mar 31 2020 11:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39631 * 120.48934 * 41.00591 * 3 2 1 5 5 N 1.31759 * 120.88402 * 179.97438 * 4 3 2 6 6 C 1.31730 * 122.03607 * 359.97438 * 5 4 3 7 7 C 1.39603 * 120.88087 * 359.97438 * 6 5 4 8 8 C 1.47854 * 120.49377 * 179.97438 * 7 6 5 9 9 O 1.21550 * 120.00428 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00170 * 0.04456 * 8 7 6 11 11 C 1.46492 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47092 * 179.97438 * 11 10 8 13 13 O 1.42899 * 109.47170 * 65.00029 * 12 11 10 14 14 C 1.42905 * 113.99676 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46590 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47535 * 65.00102 * 15 14 13 17 17 C 1.46502 * 119.99350 * 269.99792 * 16 15 14 18 18 C 1.36936 * 120.00138 * 89.99396 * 16 15 14 19 19 H 1.07993 * 119.99917 * 22.70993 * 18 16 15 20 20 C 1.38814 * 119.99556 * 202.70695 * 18 16 15 21 21 N 1.31616 * 120.00651 * 11.51680 * 20 18 16 22 22 Si 1.86803 * 119.99498 * 191.51933 * 20 18 16 23 23 H 1.48498 * 109.47358 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47267 * 120.00106 * 22 20 18 25 25 H 1.48500 * 109.46858 * 239.99831 * 22 20 18 26 26 C 1.39677 * 120.48778 * 220.98570 * 3 2 1 27 27 H 4.52728 * 13.92864 * 0.02562 * 4 2 1 28 28 H 1.08003 * 119.56332 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.56001 * 179.97438 * 6 5 4 30 30 H 0.97004 * 119.99255 * 359.97438 * 10 8 7 31 31 H 1.08999 * 109.46867 * 299.99437 * 11 10 8 32 32 H 1.08994 * 109.47537 * 59.99256 * 11 10 8 33 33 H 1.09007 * 109.46943 * 184.99555 * 12 11 10 34 34 H 1.08996 * 109.47001 * 304.99231 * 12 11 10 35 35 H 1.08999 * 109.46826 * 299.99281 * 14 13 12 36 36 H 1.08990 * 109.47298 * 59.99769 * 14 13 12 37 37 H 1.09004 * 109.46749 * 184.99747 * 15 14 13 38 38 H 1.08995 * 109.47550 * 304.99400 * 15 14 13 39 39 H 1.09003 * 109.47306 * 93.91346 * 17 16 15 40 40 H 1.09005 * 109.46831 * 213.90889 * 17 16 15 41 41 H 1.08999 * 109.47549 * 333.90962 * 17 16 15 42 42 H 0.96989 * 120.00332 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.92016 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3149 -0.9071 -0.7895 5 7 4.6324 -0.9130 -0.7958 6 6 5.3385 -0.0729 -0.0671 7 6 4.7111 0.8688 0.7505 8 6 5.5120 1.8072 1.5653 9 8 4.9564 2.6233 2.2744 10 7 6.8582 1.7581 1.5216 11 6 7.6517 2.6874 2.3294 12 6 9.1406 2.4214 2.0978 13 8 9.4726 2.7215 0.7407 14 6 10.8477 2.5052 0.4173 15 6 11.0872 2.8563 -1.0525 16 7 10.8621 4.2896 -1.2552 17 6 9.5274 4.7784 -1.6102 18 6 11.8992 5.1724 -1.1130 19 1 12.9180 4.8299 -1.2174 20 6 11.6408 6.5076 -0.8345 21 7 10.4294 6.8844 -0.4842 22 14 13.0126 7.7695 -0.9570 23 1 14.2704 7.0952 -1.3674 24 1 12.6509 8.7976 -1.9657 25 1 13.2069 8.4192 0.3641 26 6 3.3143 0.9096 0.7894 27 1 -1.0500 -0.0002 -0.0008 28 1 2.7760 -1.6138 -1.4032 29 1 6.4171 -0.1133 -0.1025 30 1 7.3015 1.1067 0.9558 31 1 7.4162 3.7118 2.0409 32 1 7.4171 2.5439 3.3840 33 1 9.7302 3.0514 2.7639 34 1 9.3583 1.3731 2.3019 35 1 11.4729 3.1367 1.0486 36 1 11.1005 1.4586 0.5864 37 1 12.1135 2.6079 -1.3227 38 1 10.3991 2.2883 -1.6785 39 1 8.9949 5.0706 -0.7051 40 1 9.6200 5.6400 -2.2714 41 1 8.9743 3.9884 -2.1182 42 1 10.2490 7.8172 -0.2893 43 1 2.7971 1.6254 1.4111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755544001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:13 Heat of formation + Delta-G solvation = 37.269143 kcal Electronic energy + Delta-G solvation = -25327.194612 eV Core-core repulsion = 21568.350660 eV Total energy + Delta-G solvation = -3758.843952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.90991 -39.23590 -37.64387 -35.49087 -34.85406 -34.41240 -32.73005 -31.51252 -31.03948 -29.43458 -27.82811 -25.70680 -25.07513 -24.36018 -23.01781 -22.35220 -21.26525 -20.34064 -19.42626 -17.75891 -17.26820 -16.90092 -16.76593 -16.13389 -15.94701 -15.33386 -15.21463 -15.09696 -14.57889 -14.25440 -14.00189 -13.74023 -13.49771 -13.35212 -13.13317 -12.92846 -12.61804 -12.15875 -12.03711 -11.57747 -11.42295 -11.20740 -10.92056 -10.86869 -10.76673 -10.51662 -10.47339 -10.12540 -10.05902 -9.89177 -9.80941 -9.73587 -9.26114 -9.07592 -9.04529 -8.48475 -6.66567 -5.64978 -3.11402 0.13812 0.57845 2.26207 2.39105 2.92085 3.01308 3.39646 3.46737 3.48597 3.62714 3.70305 3.96219 4.12720 4.37019 4.45658 4.54124 4.54756 4.80463 5.01117 5.13096 5.24941 5.43882 5.45670 5.56513 5.60935 5.63123 5.65043 5.69861 5.97855 6.07158 6.08990 6.19048 6.22532 6.34145 6.54109 6.76753 6.96176 7.05548 7.36079 7.42194 7.52609 7.75774 7.84038 7.98473 8.05614 8.46740 9.31201 9.94976 10.45325 11.39075 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019499 B = 0.002440 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.659740 B =11472.325583 C =11544.091494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.153 4.153 3 C -0.048 4.048 4 C 0.145 3.855 5 N -0.481 5.481 6 C 0.144 3.856 7 C -0.179 4.179 8 C 0.562 3.438 9 O -0.535 6.535 10 N -0.710 5.710 11 C 0.124 3.876 12 C 0.049 3.951 13 O -0.367 6.367 14 C 0.042 3.958 15 C 0.152 3.848 16 N -0.596 5.596 17 C 0.174 3.826 18 C -0.256 4.256 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.005 3.995 27 H 0.228 0.772 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.403 0.597 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.037 0.963 41 H -0.007 1.007 42 H 0.250 0.750 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.125 -17.520 3.462 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.153 4.153 3 C -0.050 4.050 4 C -0.012 4.012 5 N -0.188 5.188 6 C -0.013 4.013 7 C -0.184 4.184 8 C 0.348 3.652 9 O -0.413 6.413 10 N -0.362 5.362 11 C 0.001 3.999 12 C -0.028 4.028 13 O -0.286 6.286 14 C -0.037 4.037 15 C 0.024 3.976 16 N -0.319 5.319 17 C 0.030 3.970 18 C -0.386 4.386 19 H 0.085 0.915 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.218 1.218 26 C -0.021 4.021 27 H 0.244 0.756 28 H 0.183 0.817 29 H 0.182 0.818 30 H 0.239 0.761 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.011 0.989 42 H 0.061 0.939 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.219 -17.263 3.335 22.612 hybrid contribution 0.558 1.067 0.577 1.335 sum -13.661 -16.196 3.911 21.546 Atomic orbital electron populations 1.24939 0.95722 0.98342 0.98392 1.19569 0.91445 1.02180 1.02138 1.16846 0.88224 0.99208 1.00736 1.23167 0.89686 0.94655 0.93717 1.67745 1.07570 1.23168 1.20292 1.23160 1.00691 0.88505 0.88990 1.20964 0.94724 1.00392 1.02298 1.17902 0.82264 0.83297 0.81770 1.90797 1.71313 1.38024 1.41158 1.45807 1.05479 1.37956 1.46955 1.21474 0.88783 0.94731 0.94887 1.22616 0.94216 0.99045 0.86962 1.88015 1.27260 1.88461 1.24863 1.23529 0.81917 0.96593 1.01667 1.20898 0.98612 0.87039 0.91044 1.43888 1.07707 1.00371 1.79902 1.20693 0.84452 0.94067 0.97820 1.19235 0.87389 0.89513 1.42465 0.91536 1.25039 0.96505 0.98217 0.99930 1.70099 1.19274 1.15611 1.49705 0.86236 0.81553 0.81834 0.77210 1.20413 1.21689 1.21846 1.21819 0.92412 0.94497 0.93395 0.75570 0.81698 0.81769 0.76128 0.89716 0.90194 0.91847 0.93697 0.93266 0.95653 0.92359 0.93811 0.94966 0.94431 0.98858 0.93931 0.82985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 19.25 29.55 0.57 -0.51 16 2 C -0.15 -1.39 13.27 -38.84 -0.52 -1.90 16 3 C -0.05 -0.47 5.73 -106.91 -0.61 -1.09 16 4 C 0.15 1.34 10.91 -17.06 -0.19 1.15 16 5 N -0.48 -5.05 10.33 -12.59 -0.13 -5.18 16 6 C 0.14 1.46 10.70 -17.09 -0.18 1.27 16 7 C -0.18 -2.04 5.88 -104.87 -0.62 -2.66 16 8 C 0.56 7.66 7.78 -12.32 -0.10 7.57 16 9 O -0.54 -9.11 16.41 5.32 0.09 -9.02 16 10 N -0.71 -8.76 5.46 -61.25 -0.33 -9.09 16 11 C 0.12 1.68 6.06 -4.04 -0.02 1.65 16 12 C 0.05 0.68 6.07 37.16 0.23 0.90 16 13 O -0.37 -6.58 9.85 -35.23 -0.35 -6.93 16 14 C 0.04 0.76 6.28 37.16 0.23 0.99 16 15 C 0.15 3.06 6.11 -4.04 -0.02 3.03 16 16 N -0.60 -15.12 2.89 -181.12 -0.52 -15.64 16 17 C 0.17 4.48 8.61 59.85 0.52 5.00 16 18 C -0.26 -7.05 9.67 -15.06 -0.15 -7.19 16 19 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 20 C 0.00 0.04 5.12 -17.43 -0.09 -0.04 16 21 N -0.90 -26.73 10.62 55.49 0.59 -26.14 16 22 Si 0.90 21.99 29.57 -169.99 -5.03 16.97 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 C 0.00 0.05 9.44 -38.46 -0.36 -0.31 16 27 H 0.23 0.64 7.80 -54.09 -0.42 0.22 16 28 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.17 1.29 6.41 -52.49 -0.34 0.95 16 30 H 0.40 4.12 6.53 -40.82 -0.27 3.85 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 38 H 0.04 0.82 7.86 -51.93 -0.41 0.41 16 39 H 0.03 0.90 7.43 -51.93 -0.39 0.52 16 40 H 0.04 1.03 7.20 -51.93 -0.37 0.66 16 41 H -0.01 -0.17 7.85 -51.93 -0.41 -0.57 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.15 1.66 7.73 -52.49 -0.41 1.26 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -34.51 377.24 -7.24 -41.75 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.93 Total: -0.27 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -1.31 Total: 7.87 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.40 Total: -56.05 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.26 Total: -15.95 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.51 -7.24 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755544001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.020 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds