Wall clock time and date at job start Tue Mar 31 2020 11:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39631 * 120.48934 * 41.00591 * 3 2 1 5 5 N 1.31759 * 120.88402 * 179.97438 * 4 3 2 6 6 C 1.31730 * 122.03607 * 359.97438 * 5 4 3 7 7 C 1.39603 * 120.88087 * 359.97438 * 6 5 4 8 8 C 1.47854 * 120.49377 * 179.97438 * 7 6 5 9 9 O 1.21550 * 120.00428 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00170 * 0.04456 * 8 7 6 11 11 C 1.46492 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47092 * 179.97438 * 11 10 8 13 13 O 1.42899 * 109.47170 * 65.00029 * 12 11 10 14 14 C 1.42905 * 113.99676 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46590 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47535 * 65.00102 * 15 14 13 17 17 C 1.46502 * 119.99350 * 269.99792 * 16 15 14 18 18 C 1.36936 * 120.00138 * 89.99396 * 16 15 14 19 19 H 1.07993 * 119.99917 * 22.70993 * 18 16 15 20 20 C 1.38814 * 119.99556 * 202.70695 * 18 16 15 21 21 N 1.31616 * 120.00651 * 11.51680 * 20 18 16 22 22 Si 1.86803 * 119.99498 * 191.51933 * 20 18 16 23 23 H 1.48498 * 109.47358 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47267 * 120.00106 * 22 20 18 25 25 H 1.48500 * 109.46858 * 239.99831 * 22 20 18 26 26 C 1.39677 * 120.48778 * 220.98570 * 3 2 1 27 27 H 4.52728 * 13.92864 * 0.02562 * 4 2 1 28 28 H 1.08003 * 119.56332 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.56001 * 179.97438 * 6 5 4 30 30 H 0.97004 * 119.99255 * 359.97438 * 10 8 7 31 31 H 1.08999 * 109.46867 * 299.99437 * 11 10 8 32 32 H 1.08994 * 109.47537 * 59.99256 * 11 10 8 33 33 H 1.09007 * 109.46943 * 184.99555 * 12 11 10 34 34 H 1.08996 * 109.47001 * 304.99231 * 12 11 10 35 35 H 1.08999 * 109.46826 * 299.99281 * 14 13 12 36 36 H 1.08990 * 109.47298 * 59.99769 * 14 13 12 37 37 H 1.09004 * 109.46749 * 184.99747 * 15 14 13 38 38 H 1.08995 * 109.47550 * 304.99400 * 15 14 13 39 39 H 1.09003 * 109.47306 * 93.91346 * 17 16 15 40 40 H 1.09005 * 109.46831 * 213.90889 * 17 16 15 41 41 H 1.08999 * 109.47549 * 333.90962 * 17 16 15 42 42 H 0.96989 * 120.00332 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.92016 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3149 -0.9071 -0.7895 5 7 4.6324 -0.9130 -0.7958 6 6 5.3385 -0.0729 -0.0671 7 6 4.7111 0.8688 0.7505 8 6 5.5120 1.8072 1.5653 9 8 4.9564 2.6233 2.2744 10 7 6.8582 1.7581 1.5216 11 6 7.6517 2.6874 2.3294 12 6 9.1406 2.4214 2.0978 13 8 9.4726 2.7215 0.7407 14 6 10.8477 2.5052 0.4173 15 6 11.0872 2.8563 -1.0525 16 7 10.8621 4.2896 -1.2552 17 6 9.5274 4.7784 -1.6102 18 6 11.8992 5.1724 -1.1130 19 1 12.9180 4.8299 -1.2174 20 6 11.6408 6.5076 -0.8345 21 7 10.4294 6.8844 -0.4842 22 14 13.0126 7.7695 -0.9570 23 1 14.2704 7.0952 -1.3674 24 1 12.6509 8.7976 -1.9657 25 1 13.2069 8.4192 0.3641 26 6 3.3143 0.9096 0.7894 27 1 -1.0500 -0.0002 -0.0008 28 1 2.7760 -1.6138 -1.4032 29 1 6.4171 -0.1133 -0.1025 30 1 7.3015 1.1067 0.9558 31 1 7.4162 3.7118 2.0409 32 1 7.4171 2.5439 3.3840 33 1 9.7302 3.0514 2.7639 34 1 9.3583 1.3731 2.3019 35 1 11.4729 3.1367 1.0486 36 1 11.1005 1.4586 0.5864 37 1 12.1135 2.6079 -1.3227 38 1 10.3991 2.2883 -1.6785 39 1 8.9949 5.0706 -0.7051 40 1 9.6200 5.6400 -2.2714 41 1 8.9743 3.9884 -2.1182 42 1 10.2490 7.8172 -0.2893 43 1 2.7971 1.6254 1.4111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755544001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:12 Heat of formation + Delta-G solvation = 13.627123 kcal Electronic energy + Delta-G solvation = -25328.219807 eV Core-core repulsion = 21568.350660 eV Total energy + Delta-G solvation = -3759.869147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77726 -40.24639 -39.00314 -37.21856 -35.92599 -35.31307 -33.64494 -33.33082 -31.86044 -30.72990 -29.33502 -27.80921 -25.93693 -25.17248 -24.78543 -23.40041 -22.25670 -22.11306 -20.24655 -18.76528 -18.52626 -18.12774 -17.70645 -17.50159 -17.10081 -16.74471 -16.32929 -16.22928 -15.93078 -15.40074 -15.21966 -15.16534 -14.96130 -14.63657 -14.31048 -14.05851 -13.81477 -13.63395 -13.14166 -13.01727 -12.74964 -12.70352 -12.51181 -12.47043 -12.32155 -11.98332 -11.83369 -11.77813 -11.65574 -11.51580 -10.98189 -10.62270 -10.60759 -10.35750 -10.24282 -9.89312 -8.71793 -7.77184 -5.25086 -0.63130 -0.23100 1.46079 1.47655 1.54981 1.57675 1.64444 2.00892 2.12296 2.53140 2.85159 2.87675 3.07746 3.26829 3.36099 3.63170 3.64235 3.70802 3.78888 3.94786 4.09294 4.19409 4.32951 4.47636 4.55296 4.61788 4.64518 4.71723 4.77683 4.82707 4.89164 4.95719 5.02021 5.03178 5.23562 5.27945 5.38116 5.38886 5.67752 5.84173 6.36653 6.37047 6.48286 6.48737 6.66215 7.03054 7.20030 7.93927 8.39287 9.26013 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019499 B = 0.002440 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.659740 B =11472.325583 C =11544.091494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.208 4.208 3 C -0.047 4.047 4 C 0.149 3.851 5 N -0.492 5.492 6 C 0.148 3.852 7 C -0.190 4.190 8 C 0.562 3.438 9 O -0.578 6.578 10 N -0.700 5.700 11 C 0.129 3.871 12 C 0.052 3.948 13 O -0.394 6.394 14 C 0.052 3.948 15 C 0.144 3.856 16 N -0.613 5.613 17 C 0.195 3.805 18 C -0.257 4.257 19 H 0.075 0.925 20 C -0.059 4.059 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.295 1.295 26 C -0.008 4.008 27 H 0.265 0.735 28 H 0.193 0.807 29 H 0.186 0.814 30 H 0.415 0.585 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.000 1.000 40 H 0.007 0.993 41 H 0.019 0.981 42 H 0.243 0.757 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.025 -20.091 2.906 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.209 4.209 3 C -0.049 4.049 4 C -0.008 4.008 5 N -0.200 5.200 6 C -0.009 4.009 7 C -0.195 4.195 8 C 0.349 3.651 9 O -0.459 6.459 10 N -0.352 5.352 11 C 0.006 3.994 12 C -0.025 4.025 13 O -0.314 6.314 14 C -0.027 4.027 15 C 0.018 3.982 16 N -0.336 5.336 17 C 0.050 3.950 18 C -0.388 4.388 19 H 0.093 0.907 20 C -0.253 4.253 21 N -0.585 5.585 22 Si 0.795 3.205 23 H -0.187 1.187 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.034 4.034 27 H 0.281 0.719 28 H 0.210 0.790 29 H 0.203 0.797 30 H 0.253 0.747 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.040 0.960 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.018 0.982 40 H 0.026 0.974 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.075 -19.903 2.763 24.533 hybrid contribution 0.400 1.742 0.722 1.927 sum -13.675 -18.161 3.485 23.000 Atomic orbital electron populations 1.25880 0.96442 0.95621 0.95625 1.19821 0.91887 1.04607 1.04561 1.16940 0.89086 0.98678 1.00154 1.23626 0.89452 0.94507 0.93230 1.67828 1.08210 1.23359 1.20553 1.23419 1.01645 0.87714 0.88171 1.20797 0.94673 1.00921 1.03159 1.18243 0.82569 0.82991 0.81307 1.90768 1.72104 1.39901 1.43113 1.45709 1.05113 1.37647 1.46717 1.21355 0.89135 0.93028 0.95898 1.22728 0.93678 1.01146 0.84915 1.87969 1.27114 1.89167 1.27104 1.23253 0.81662 0.98649 0.99146 1.21161 1.00030 0.84057 0.92988 1.44109 1.06822 1.02439 1.80276 1.20321 0.85098 0.93788 0.95836 1.19613 0.88309 0.90096 1.40735 0.90704 1.25818 0.98619 1.00271 1.00620 1.70286 1.21272 1.15322 1.51587 0.85215 0.79530 0.79232 0.76550 1.18665 1.22259 1.22255 1.21869 0.92557 0.95012 0.93967 0.71916 0.79011 0.79707 0.74673 0.93538 0.88522 0.92502 0.89749 0.96037 0.90939 0.90941 0.91995 0.98206 0.97429 0.96227 0.94736 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 19.25 74.32 1.43 0.09 16 2 C -0.21 -3.56 13.27 30.01 0.40 -3.16 16 3 C -0.05 -0.90 5.73 -21.35 -0.12 -1.02 16 4 C 0.15 2.55 10.91 85.04 0.93 3.47 16 5 N -0.49 -9.62 10.33 -193.76 -2.00 -11.62 16 6 C 0.15 2.83 10.70 85.04 0.91 3.74 16 7 C -0.19 -4.39 5.88 -20.03 -0.12 -4.51 16 8 C 0.56 15.69 7.78 86.79 0.68 16.37 16 9 O -0.58 -20.67 16.41 -3.87 -0.06 -20.73 16 10 N -0.70 -16.97 5.46 -465.98 -2.54 -19.51 16 11 C 0.13 3.51 6.06 86.38 0.52 4.03 16 12 C 0.05 1.36 6.07 71.98 0.44 1.80 16 13 O -0.39 -13.64 9.85 -148.98 -1.47 -15.11 16 14 C 0.05 1.73 6.28 71.98 0.45 2.18 16 15 C 0.14 5.46 6.11 86.38 0.53 5.99 16 16 N -0.61 -30.85 2.89 -726.93 -2.10 -32.95 16 17 C 0.19 10.18 8.61 127.77 1.10 11.28 16 18 C -0.26 -14.07 9.67 84.03 0.81 -13.26 16 19 H 0.08 3.90 7.85 -2.91 -0.02 3.88 16 20 C -0.06 -3.34 5.12 84.86 0.43 -2.91 16 21 N -0.94 -57.31 10.62 21.65 0.23 -57.08 16 22 Si 0.97 45.72 29.57 68.60 2.03 47.75 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 26 C -0.01 -0.18 9.44 22.99 0.22 0.04 16 27 H 0.26 0.47 7.80 -4.42 -0.03 0.44 16 28 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.19 2.54 6.41 -2.91 -0.02 2.52 16 30 H 0.42 7.81 6.53 -92.71 -0.61 7.21 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.53 8.03 -2.39 -0.02 2.51 16 38 H 0.06 2.13 7.86 -2.39 -0.02 2.11 16 39 H 0.00 -0.02 7.43 -2.39 -0.02 -0.04 16 40 H 0.01 0.40 7.20 -2.38 -0.02 0.38 16 41 H 0.02 0.89 7.85 -2.39 -0.02 0.87 16 42 H 0.24 14.56 8.31 -92.72 -0.77 13.78 16 43 H 0.14 3.39 7.73 -2.91 -0.02 3.37 16 Total: -1.00 -77.20 377.24 3.11 -74.09 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.41 Total: 11.02 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 8.61 Total: 24.13 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -6.41 Total: -121.16 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -1.53 Total: -35.84 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.20 3.11 -74.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755544001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.720 kcal (2) G-P(sol) polarization free energy of solvation -77.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds