Wall clock time and date at job start Tue Mar 31 2020 11:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35469 * 124.78737 * 2 1 4 4 C 1.36375 * 109.77104 * 180.02562 * 3 2 1 5 5 C 1.46913 * 126.76771 * 180.02562 * 4 3 2 6 6 O 1.21674 * 119.99659 * 179.97438 * 5 4 3 7 7 N 1.34768 * 120.00140 * 359.97290 * 5 4 3 8 8 C 1.46505 * 120.00096 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47151 * 179.97438 * 8 7 5 10 10 H 1.08996 * 109.47346 * 294.99852 * 9 8 7 11 11 C 1.53004 * 109.46763 * 175.00308 * 9 8 7 12 12 O 1.42897 * 109.47382 * 304.99959 * 11 9 8 13 13 N 1.46494 * 109.46917 * 55.00702 * 9 8 7 14 14 C 1.36942 * 120.00007 * 204.99711 * 13 9 8 15 15 H 1.08005 * 119.99712 * 359.97438 * 14 13 9 16 16 C 1.38808 * 120.00310 * 179.97438 * 14 13 9 17 17 N 1.31617 * 119.99904 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00032 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46961 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46915 * 120.00357 * 18 16 14 21 21 H 1.48493 * 109.47141 * 239.99770 * 18 16 14 22 22 C 1.47435 * 106.46313 * 0.02562 * 4 3 2 23 23 C 1.39279 * 134.01219 * 179.97438 * 22 4 3 24 24 C 1.37750 * 119.67635 * 179.97438 * 23 22 4 25 25 C 1.38756 * 120.29885 * 0.02562 * 24 23 22 26 26 C 1.37762 * 120.63484 * 359.97438 * 25 24 23 27 27 C 1.37962 * 124.78920 * 179.70439 * 2 1 3 28 28 H 1.09002 * 109.47391 * 90.02048 * 1 2 3 29 29 H 1.09001 * 109.46813 * 330.02105 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.02232 * 1 2 3 31 31 H 1.07998 * 125.11771 * 0.04021 * 3 2 1 32 32 H 0.96995 * 120.00302 * 359.97438 * 7 5 4 33 33 H 1.08992 * 109.47206 * 300.00574 * 8 7 5 34 34 H 1.09005 * 109.46816 * 60.00497 * 8 7 5 35 35 H 1.08996 * 109.47179 * 65.00466 * 11 9 8 36 36 H 1.08998 * 109.46785 * 184.99918 * 11 9 8 37 37 H 0.96693 * 114.00157 * 180.02562 * 12 11 9 38 38 H 0.96998 * 120.00446 * 24.99663 * 13 9 8 39 39 H 0.97001 * 119.99777 * 180.02562 * 17 16 14 40 40 H 1.08005 * 120.15973 * 0.02715 * 23 22 4 41 41 H 1.07994 * 119.85311 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.68146 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.03548 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5551 0.7592 -0.0006 5 6 4.7093 1.6681 -0.0002 6 8 5.8392 1.2165 -0.0004 7 7 4.5168 3.0019 0.0002 8 6 5.6679 3.9082 0.0011 9 6 5.1762 5.3571 0.0007 10 1 4.6489 5.5617 -0.9310 11 6 6.3731 6.3018 0.1273 12 8 7.1310 5.9575 1.2888 13 7 4.2684 5.5649 1.1315 14 6 3.3246 6.5558 1.0788 15 1 3.2499 7.1843 0.2037 16 6 2.4641 6.7524 2.1501 17 7 2.5555 5.9868 3.2167 18 14 1.1772 8.1046 2.0783 19 1 1.2813 8.8186 0.7805 20 1 -0.1763 7.5071 2.2071 21 1 1.4032 9.0624 3.1903 22 6 3.5923 -0.7146 -0.0016 23 6 4.6181 -1.6568 -0.0029 24 6 4.3108 -2.9996 -0.0031 25 6 2.9868 -3.4147 -0.0025 26 6 1.9623 -2.4937 -0.0011 27 6 2.2521 -1.1330 0.0058 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 1.8668 2.1268 0.0006 32 1 3.6161 3.3620 -0.0001 33 1 6.2708 3.7289 0.8912 34 1 6.2716 3.7296 -0.8888 35 1 7.0029 6.2108 -0.7576 36 1 6.0178 7.3284 0.2164 37 1 7.9066 6.5167 1.4324 38 1 4.3357 5.0007 1.9177 39 1 1.9538 6.1240 3.9651 40 1 5.6494 -1.3360 -0.0030 41 1 5.1039 -3.7325 -0.0037 42 1 2.7573 -4.4700 -0.0022 43 1 0.9352 -2.8276 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755644347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:44 Heat of formation + Delta-G solvation = -9.838780 kcal Electronic energy + Delta-G solvation = -26094.542866 eV Core-core repulsion = 22333.656161 eV Total energy + Delta-G solvation = -3760.886705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.44887 -38.82617 -37.09486 -36.99960 -34.80032 -33.40995 -32.89548 -31.32571 -30.30270 -29.14182 -28.22842 -26.86561 -24.98609 -23.65328 -22.87181 -21.96128 -21.16184 -20.03141 -19.26702 -17.74471 -17.27728 -16.64334 -16.53638 -15.66622 -15.57619 -15.47717 -15.36543 -14.68964 -14.35285 -14.07925 -13.93371 -13.80869 -13.40452 -13.31033 -12.98913 -12.82037 -12.73269 -12.63143 -12.52818 -11.92676 -11.62290 -11.40483 -11.30572 -10.93928 -10.91130 -10.87067 -10.52583 -10.08869 -9.80524 -9.57577 -9.47697 -9.31806 -9.00064 -8.46576 -8.24580 -7.62727 -7.04657 -5.83298 -3.13561 1.05557 1.58087 2.17315 2.65537 3.35134 3.41704 3.44127 3.68381 3.77705 4.10138 4.50255 4.56706 4.62193 4.78454 4.95676 4.98377 5.02707 5.11205 5.24665 5.32485 5.42263 5.51097 5.54794 5.60275 5.64132 5.72848 5.82313 5.95178 6.06549 6.08514 6.09464 6.42057 6.43664 6.54415 6.60195 6.71036 6.75365 6.80994 7.04088 7.13308 7.17238 7.60930 8.13732 8.23993 8.33730 8.80779 9.45873 10.02443 10.39312 11.38087 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.003702 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.119071 B = 7562.520531 C = 9300.715680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.474 5.474 3 C 0.113 3.887 4 C -0.223 4.223 5 C 0.587 3.413 6 O -0.556 6.556 7 N -0.713 5.713 8 C 0.121 3.879 9 C 0.165 3.835 10 H 0.065 0.935 11 C 0.060 3.940 12 O -0.560 6.560 13 N -0.714 5.714 14 C -0.246 4.246 15 H 0.070 0.930 16 C -0.008 4.008 17 N -0.925 5.925 18 Si 0.904 3.096 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.061 4.061 23 C -0.061 4.061 24 C -0.148 4.148 25 C -0.104 4.104 26 C -0.129 4.129 27 C 0.085 3.915 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.181 0.819 32 H 0.405 0.595 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.048 0.952 37 H 0.363 0.637 38 H 0.389 0.611 39 H 0.255 0.745 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 -13.354 -8.836 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.156 5.156 3 C -0.019 4.019 4 C -0.233 4.233 5 C 0.374 3.626 6 O -0.436 6.436 7 N -0.363 5.363 8 C -0.003 4.003 9 C 0.054 3.946 10 H 0.083 0.917 11 C -0.022 4.022 12 O -0.363 6.363 13 N -0.355 5.355 14 C -0.377 4.377 15 H 0.088 0.912 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.735 3.265 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.066 4.066 23 C -0.079 4.079 24 C -0.167 4.167 25 C -0.123 4.123 26 C -0.149 4.149 27 C -0.019 4.019 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.198 0.802 32 H 0.241 0.759 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.208 0.792 38 H 0.224 0.776 39 H 0.065 0.935 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.115 -13.966 -8.824 16.655 hybrid contribution -0.887 1.503 0.323 1.775 sum -3.002 -12.463 -8.501 15.382 Atomic orbital electron populations 1.22063 0.76647 1.04772 1.03310 1.43584 1.06346 1.04323 1.61327 1.22258 0.89951 0.91697 0.97956 1.20111 0.92224 0.92416 1.18576 1.17159 0.87612 0.81632 0.76147 1.90719 1.24159 1.76984 1.51766 1.45792 1.10968 1.05090 1.74499 1.21504 0.87869 0.88925 1.01996 1.20600 0.89853 0.90819 0.93310 0.91720 1.23023 0.93377 0.99804 0.85981 1.86577 1.42584 1.60015 1.47091 1.42400 1.36646 1.39860 1.16635 1.19270 1.08378 1.09120 1.00943 0.91172 1.24738 0.99969 0.99374 0.96427 1.69698 1.40340 1.40712 1.06455 0.86181 0.81456 0.81631 0.77228 1.20608 1.21960 1.21897 1.18778 0.91997 0.91693 1.04092 1.20720 0.99125 0.91494 0.96569 1.20937 0.96297 0.95410 1.04022 1.20760 0.92344 0.98631 1.00596 1.19940 0.99426 0.88931 1.06609 1.18280 0.89876 0.88241 1.05541 0.90903 0.89188 0.89925 0.80183 0.75944 0.90625 0.92184 0.95517 0.93405 0.79196 0.77611 0.93521 0.84897 0.85968 0.85903 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.99 59.85 0.66 1.24 16 2 N -0.47 -5.85 3.14 -121.59 -0.38 -6.23 16 3 C 0.11 1.56 10.76 -16.62 -0.18 1.38 16 4 C -0.22 -3.73 6.27 -103.31 -0.65 -4.38 16 5 C 0.59 11.10 7.80 -12.75 -0.10 11.00 16 6 O -0.56 -12.02 16.16 5.21 0.08 -11.93 16 7 N -0.71 -12.76 5.38 -61.54 -0.33 -13.09 16 8 C 0.12 2.23 5.12 -4.04 -0.02 2.21 16 9 C 0.17 3.14 2.84 -67.93 -0.19 2.95 16 10 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 11 C 0.06 1.04 6.86 37.16 0.25 1.29 16 12 O -0.56 -10.11 12.64 -35.23 -0.45 -10.56 16 13 N -0.71 -16.81 4.51 -53.43 -0.24 -17.05 16 14 C -0.25 -6.33 9.93 -15.06 -0.15 -6.48 16 15 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 17 N -0.92 -26.79 13.06 55.49 0.72 -26.07 16 18 Si 0.90 21.23 29.55 -169.99 -5.02 16.21 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 C -0.06 -0.99 6.27 -104.95 -0.66 -1.65 16 23 C -0.06 -0.91 9.85 -39.37 -0.39 -1.30 16 24 C -0.15 -1.78 10.03 -39.57 -0.40 -2.18 16 25 C -0.10 -1.12 10.01 -39.56 -0.40 -1.52 16 26 C -0.13 -1.47 9.91 -39.43 -0.39 -1.86 16 27 C 0.08 1.17 6.79 -83.96 -0.57 0.60 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.64 8.13 -51.93 -0.42 0.21 16 30 H 0.08 0.54 8.03 -51.93 -0.42 0.12 16 31 H 0.18 2.15 7.38 -52.49 -0.39 1.76 16 32 H 0.40 6.99 7.02 -40.82 -0.29 6.71 16 33 H 0.08 1.57 7.39 -51.93 -0.38 1.19 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.36 4.74 9.12 45.56 0.42 5.16 16 38 H 0.39 10.27 7.80 -40.82 -0.32 9.95 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.13 2.10 7.45 -52.48 -0.39 1.71 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 1.02 8.02 -52.49 -0.42 0.59 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -34.14 367.91 -8.46 -42.60 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -5.11 Total: 19.61 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -3.27 Total: 0.98 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.23 Total: -62.45 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.36 Total: -22.49 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.14 -8.46 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755644347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.759 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds