Wall clock time and date at job start Tue Mar 31 2020 11:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35469 * 124.78737 * 2 1 4 4 C 1.36375 * 109.77104 * 180.02562 * 3 2 1 5 5 C 1.46913 * 126.76771 * 180.02562 * 4 3 2 6 6 O 1.21674 * 119.99659 * 179.97438 * 5 4 3 7 7 N 1.34768 * 120.00140 * 359.97290 * 5 4 3 8 8 C 1.46505 * 120.00096 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47151 * 179.97438 * 8 7 5 10 10 H 1.08996 * 109.47346 * 294.99852 * 9 8 7 11 11 C 1.53004 * 109.46763 * 175.00308 * 9 8 7 12 12 O 1.42897 * 109.47382 * 304.99959 * 11 9 8 13 13 N 1.46494 * 109.46917 * 55.00702 * 9 8 7 14 14 C 1.36942 * 120.00007 * 204.99711 * 13 9 8 15 15 H 1.08005 * 119.99712 * 359.97438 * 14 13 9 16 16 C 1.38808 * 120.00310 * 179.97438 * 14 13 9 17 17 N 1.31617 * 119.99904 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00032 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46961 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46915 * 120.00357 * 18 16 14 21 21 H 1.48493 * 109.47141 * 239.99770 * 18 16 14 22 22 C 1.47435 * 106.46313 * 0.02562 * 4 3 2 23 23 C 1.39279 * 134.01219 * 179.97438 * 22 4 3 24 24 C 1.37750 * 119.67635 * 179.97438 * 23 22 4 25 25 C 1.38756 * 120.29885 * 0.02562 * 24 23 22 26 26 C 1.37762 * 120.63484 * 359.97438 * 25 24 23 27 27 C 1.37962 * 124.78920 * 179.70439 * 2 1 3 28 28 H 1.09002 * 109.47391 * 90.02048 * 1 2 3 29 29 H 1.09001 * 109.46813 * 330.02105 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.02232 * 1 2 3 31 31 H 1.07998 * 125.11771 * 0.04021 * 3 2 1 32 32 H 0.96995 * 120.00302 * 359.97438 * 7 5 4 33 33 H 1.08992 * 109.47206 * 300.00574 * 8 7 5 34 34 H 1.09005 * 109.46816 * 60.00497 * 8 7 5 35 35 H 1.08996 * 109.47179 * 65.00466 * 11 9 8 36 36 H 1.08998 * 109.46785 * 184.99918 * 11 9 8 37 37 H 0.96693 * 114.00157 * 180.02562 * 12 11 9 38 38 H 0.96998 * 120.00446 * 24.99663 * 13 9 8 39 39 H 0.97001 * 119.99777 * 180.02562 * 17 16 14 40 40 H 1.08005 * 120.15973 * 0.02715 * 23 22 4 41 41 H 1.07994 * 119.85311 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.68146 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.03548 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5551 0.7592 -0.0006 5 6 4.7093 1.6681 -0.0002 6 8 5.8392 1.2165 -0.0004 7 7 4.5168 3.0019 0.0002 8 6 5.6679 3.9082 0.0011 9 6 5.1762 5.3571 0.0007 10 1 4.6489 5.5617 -0.9310 11 6 6.3731 6.3018 0.1273 12 8 7.1310 5.9575 1.2888 13 7 4.2684 5.5649 1.1315 14 6 3.3246 6.5558 1.0788 15 1 3.2499 7.1843 0.2037 16 6 2.4641 6.7524 2.1501 17 7 2.5555 5.9868 3.2167 18 14 1.1772 8.1046 2.0783 19 1 1.2813 8.8186 0.7805 20 1 -0.1763 7.5071 2.2071 21 1 1.4032 9.0624 3.1903 22 6 3.5923 -0.7146 -0.0016 23 6 4.6181 -1.6568 -0.0029 24 6 4.3108 -2.9996 -0.0031 25 6 2.9868 -3.4147 -0.0025 26 6 1.9623 -2.4937 -0.0011 27 6 2.2521 -1.1330 0.0058 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 1.8668 2.1268 0.0006 32 1 3.6161 3.3620 -0.0001 33 1 6.2708 3.7289 0.8912 34 1 6.2716 3.7296 -0.8888 35 1 7.0029 6.2108 -0.7576 36 1 6.0178 7.3284 0.2164 37 1 7.9066 6.5167 1.4324 38 1 4.3357 5.0007 1.9177 39 1 1.9538 6.1240 3.9651 40 1 5.6494 -1.3360 -0.0030 41 1 5.1039 -3.7325 -0.0037 42 1 2.7573 -4.4700 -0.0022 43 1 0.9352 -2.8276 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755644347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:43 Heat of formation + Delta-G solvation = -35.207020 kcal Electronic energy + Delta-G solvation = -26095.642916 eV Core-core repulsion = 22333.656161 eV Total energy + Delta-G solvation = -3761.986754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.47150 -40.28782 -38.52082 -38.04033 -36.35234 -35.13303 -33.94986 -33.03810 -31.22229 -30.45739 -29.68081 -27.88086 -26.29577 -25.57078 -23.93475 -23.10577 -22.16603 -21.58530 -20.56129 -19.41143 -18.56654 -18.15288 -17.66933 -17.01279 -16.75300 -16.56186 -16.44295 -16.18704 -15.91948 -15.43936 -15.19396 -14.93330 -14.86485 -14.79000 -14.39902 -14.13994 -13.78540 -13.63175 -13.53518 -13.30546 -13.03207 -12.74631 -12.64446 -12.55499 -12.22749 -12.19009 -11.92545 -11.84421 -11.71288 -11.05792 -10.86070 -10.70538 -10.62968 -9.97228 -9.24107 -8.98922 -8.66424 -7.87588 -5.17341 0.01351 0.58947 1.02880 1.50124 1.52610 1.61095 1.74593 2.35154 2.46476 2.59365 2.99102 3.44549 3.63152 3.69752 3.70121 3.82188 3.92581 4.05516 4.14501 4.27588 4.31976 4.45375 4.46154 4.51956 4.57979 4.62286 4.64007 4.72280 4.73720 4.80127 4.92826 5.01301 5.13711 5.25695 5.47922 5.54308 5.58356 5.60321 5.71910 5.73340 6.13635 6.25036 6.30451 6.70500 7.08318 7.36080 7.38704 8.10575 8.37185 9.35227 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.003702 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.119071 B = 7562.520531 C = 9300.715680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.467 5.467 3 C 0.130 3.870 4 C -0.270 4.270 5 C 0.583 3.417 6 O -0.595 6.595 7 N -0.708 5.708 8 C 0.132 3.868 9 C 0.163 3.837 10 H 0.082 0.918 11 C 0.064 3.936 12 O -0.584 6.584 13 N -0.722 5.722 14 C -0.234 4.234 15 H 0.082 0.918 16 C -0.069 4.069 17 N -0.966 5.966 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.294 1.294 21 H -0.304 1.304 22 C -0.094 4.094 23 C -0.098 4.098 24 C -0.139 4.139 25 C -0.102 4.102 26 C -0.120 4.120 27 C 0.070 3.930 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.197 0.803 32 H 0.408 0.592 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.385 0.615 38 H 0.372 0.628 39 H 0.248 0.752 40 H 0.107 0.893 41 H 0.145 0.855 42 H 0.163 0.837 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 -14.248 -10.321 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.147 5.147 3 C -0.004 4.004 4 C -0.280 4.280 5 C 0.373 3.627 6 O -0.479 6.479 7 N -0.358 5.358 8 C 0.008 3.992 9 C 0.054 3.946 10 H 0.099 0.901 11 C -0.017 4.017 12 O -0.391 6.391 13 N -0.362 5.362 14 C -0.366 4.366 15 H 0.100 0.900 16 C -0.262 4.262 17 N -0.617 5.617 18 Si 0.798 3.202 19 H -0.188 1.188 20 H -0.221 1.221 21 H -0.232 1.232 22 C -0.099 4.099 23 C -0.117 4.117 24 C -0.158 4.158 25 C -0.121 4.121 26 C -0.140 4.140 27 C -0.034 4.034 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.214 0.786 32 H 0.244 0.756 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.233 0.767 38 H 0.204 0.796 39 H 0.057 0.943 40 H 0.126 0.874 41 H 0.163 0.837 42 H 0.180 0.820 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.175 -14.846 -10.369 18.584 hybrid contribution -0.210 1.682 0.730 1.845 sum -4.385 -13.165 -9.638 16.895 Atomic orbital electron populations 1.22438 0.73711 1.06280 1.05099 1.43872 1.07944 1.03346 1.59543 1.22433 0.89294 0.92856 0.95854 1.20049 0.92631 0.92838 1.22501 1.17571 0.87948 0.81965 0.75230 1.90676 1.25800 1.77563 1.53814 1.45729 1.10921 1.04893 1.74304 1.21347 0.87907 0.88753 1.01235 1.20836 0.90114 0.91399 0.92295 0.90071 1.22887 0.93247 0.98263 0.87293 1.86533 1.43844 1.61088 1.47636 1.42502 1.37358 1.39230 1.17136 1.19657 1.07655 1.08567 1.00701 0.89996 1.25457 1.02453 1.01806 0.96472 1.69867 1.41634 1.42898 1.07267 0.85161 0.78914 0.78885 0.77252 1.18846 1.22116 1.23203 1.19083 0.93780 0.91628 1.05373 1.20723 0.98039 0.93151 0.99740 1.21269 0.98114 0.94365 1.02034 1.21235 0.91296 1.00577 0.98950 1.20419 1.01458 0.87672 1.04494 1.18576 0.89067 0.89604 1.06130 0.88904 0.88305 0.87927 0.78618 0.75575 0.93499 0.90746 0.91718 0.94316 0.76716 0.79630 0.94349 0.87439 0.83703 0.81975 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 10.99 127.77 1.40 2.22 16 2 N -0.47 -10.79 3.14 -538.61 -1.69 -12.49 16 3 C 0.13 3.59 10.76 83.70 0.90 4.49 16 4 C -0.27 -9.47 6.27 -19.02 -0.12 -9.59 16 5 C 0.58 23.41 7.80 86.52 0.67 24.08 16 6 O -0.60 -27.65 16.16 -4.27 -0.07 -27.72 16 7 N -0.71 -26.31 5.38 -466.86 -2.51 -28.82 16 8 C 0.13 4.95 5.12 86.38 0.44 5.40 16 9 C 0.16 6.09 2.84 44.99 0.13 6.22 16 10 H 0.08 2.79 8.08 -2.39 -0.02 2.77 16 11 C 0.06 2.13 6.86 71.98 0.49 2.63 16 12 O -0.58 -20.89 12.64 -148.98 -1.88 -22.78 16 13 N -0.72 -34.20 4.51 -322.95 -1.46 -35.66 16 14 C -0.23 -11.92 9.93 84.03 0.83 -11.09 16 15 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 16 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 17 N -0.97 -57.11 13.06 21.65 0.28 -56.83 16 18 Si 0.97 43.63 29.55 68.60 2.03 45.65 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 C -0.09 -3.16 6.27 -20.08 -0.13 -3.29 16 23 C -0.10 -3.11 9.85 22.40 0.22 -2.89 16 24 C -0.14 -3.23 10.03 22.28 0.22 -3.00 16 25 C -0.10 -1.88 10.01 22.28 0.22 -1.65 16 26 C -0.12 -2.37 9.91 22.37 0.22 -2.14 16 27 C 0.07 1.86 6.79 38.92 0.26 2.12 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.10 1.12 8.13 -2.39 -0.02 1.10 16 30 H 0.10 0.93 8.03 -2.38 -0.02 0.91 16 31 H 0.20 4.59 7.38 -2.91 -0.02 4.57 16 32 H 0.41 14.45 7.02 -92.71 -0.65 13.79 16 33 H 0.05 2.04 7.39 -2.39 -0.02 2.02 16 34 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.38 9.70 9.12 -74.06 -0.68 9.02 16 38 H 0.37 20.18 7.80 -92.71 -0.72 19.46 16 39 H 0.25 14.34 8.31 -92.71 -0.77 13.56 16 40 H 0.11 3.81 7.45 -2.91 -0.02 3.79 16 41 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.15 1.88 8.02 -2.91 -0.02 1.85 16 Total: -1.00 -77.29 367.91 -0.04 -77.32 By element: Atomic # 1 Polarization: 52.07 SS G_CDS: -0.99 Total: 51.08 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 6.25 Total: 10.23 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -5.38 Total: -133.79 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -1.95 Total: -50.49 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -77.29 -0.04 -77.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755644347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.118 kcal (2) G-P(sol) polarization free energy of solvation -77.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds