Wall clock time and date at job start Tue Mar 31 2020 11:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35469 * 124.78737 * 2 1 4 4 C 1.36380 * 109.77140 * 179.97438 * 3 2 1 5 5 C 1.46914 * 126.76857 * 180.02562 * 4 3 2 6 6 O 1.21673 * 119.99653 * 179.97438 * 5 4 3 7 7 N 1.34769 * 119.99952 * 359.97379 * 5 4 3 8 8 C 1.46500 * 120.00060 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47431 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47881 * 64.99403 * 9 8 7 11 11 C 1.53006 * 109.47447 * 184.99698 * 9 8 7 12 12 O 1.42901 * 109.46801 * 54.99771 * 11 9 8 13 13 N 1.46502 * 109.47233 * 304.99598 * 9 8 7 14 14 C 1.36932 * 120.00300 * 155.00363 * 13 9 8 15 15 H 1.07999 * 119.99982 * 359.97438 * 14 13 9 16 16 C 1.38809 * 119.99904 * 180.02562 * 14 13 9 17 17 N 1.31620 * 120.00489 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00120 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46876 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46946 * 119.99835 * 18 16 14 21 21 H 1.48501 * 109.47325 * 240.00055 * 18 16 14 22 22 C 1.47441 * 106.45759 * 0.02562 * 4 3 2 23 23 C 1.39278 * 133.99977 * 179.97438 * 22 4 3 24 24 C 1.37762 * 119.66596 * 180.02562 * 23 22 4 25 25 C 1.38748 * 120.30272 * 359.97438 * 24 23 22 26 26 C 1.37768 * 120.63623 * 0.02562 * 25 24 23 27 27 C 1.37962 * 124.78920 * 179.70439 * 2 1 3 28 28 H 1.09002 * 109.47391 * 90.02048 * 1 2 3 29 29 H 1.09001 * 109.46813 * 330.02105 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.02232 * 1 2 3 31 31 H 1.08000 * 125.11546 * 359.97438 * 3 2 1 32 32 H 0.97007 * 120.00434 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.46830 * 299.99935 * 8 7 5 34 34 H 1.08998 * 109.47316 * 59.99605 * 8 7 5 35 35 H 1.08996 * 109.47408 * 174.99549 * 11 9 8 36 36 H 1.09000 * 109.46638 * 294.99845 * 11 9 8 37 37 H 0.96704 * 113.99507 * 180.02562 * 12 11 9 38 38 H 0.97004 * 119.99774 * 334.99697 * 13 9 8 39 39 H 0.96998 * 120.00597 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.17121 * 0.02695 * 23 22 4 41 41 H 1.07998 * 119.84474 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.68255 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.03549 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5551 0.7592 0.0006 5 6 4.7094 1.6681 0.0013 6 8 5.8392 1.2165 0.0022 7 7 4.5168 3.0019 0.0009 8 6 5.6678 3.9082 0.0011 9 6 5.1763 5.3570 -0.0001 10 1 4.6476 5.5622 0.9307 11 6 6.3733 6.3018 -0.1256 12 8 7.1327 5.9567 -1.2859 13 7 4.2699 5.5643 -1.1323 14 6 3.3262 6.5552 -1.0814 15 1 3.2497 7.1837 -0.2065 16 6 2.4671 6.7512 -2.1539 17 7 2.5598 5.9849 -3.2201 18 14 1.1792 8.1025 -2.0843 19 1 1.2816 8.8175 -0.7868 20 1 1.4062 9.0604 -3.1960 21 1 -0.1737 7.5042 -2.2149 22 6 3.5922 -0.7147 0.0003 23 6 4.6181 -1.6567 0.0002 24 6 4.3108 -2.9996 -0.0006 25 6 2.9868 -3.4147 -0.0007 26 6 1.9623 -2.4937 -0.0006 27 6 2.2521 -1.1330 0.0058 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 1.8668 2.1268 -0.0004 32 1 3.6160 3.3620 -0.0002 33 1 6.2709 3.7295 0.8913 34 1 6.2715 3.7291 -0.8886 35 1 6.0181 7.3283 -0.2158 36 1 7.0019 6.2113 0.7603 37 1 7.9090 6.5155 -1.4283 38 1 4.3383 4.9996 -1.9180 39 1 1.9597 6.1221 -3.9697 40 1 5.6494 -1.3361 0.0007 41 1 5.1040 -3.7325 -0.0002 42 1 2.7573 -4.4701 -0.0009 43 1 0.9352 -2.8277 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755644348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:47 Heat of formation + Delta-G solvation = -9.806690 kcal Electronic energy + Delta-G solvation = -26094.377309 eV Core-core repulsion = 22333.491996 eV Total energy + Delta-G solvation = -3760.885313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44904 -38.82599 -37.09454 -36.99881 -34.79946 -33.40950 -32.89544 -31.32441 -30.30237 -29.14168 -28.22802 -26.86584 -24.98588 -23.65227 -22.87196 -21.96108 -21.16180 -20.03080 -19.26703 -17.74442 -17.27701 -16.64302 -16.53597 -15.65943 -15.58349 -15.48454 -15.35290 -14.68942 -14.35621 -14.08179 -13.93450 -13.79913 -13.40919 -13.31365 -12.97568 -12.82092 -12.74403 -12.63850 -12.52291 -11.92766 -11.62265 -11.39999 -11.30767 -10.93981 -10.91018 -10.87002 -10.52510 -10.08821 -9.80426 -9.57519 -9.47656 -9.31779 -9.00018 -8.46537 -8.24620 -7.62616 -7.04580 -5.83133 -3.13438 1.05555 1.58100 2.17325 2.65484 3.35232 3.41759 3.44189 3.68466 3.77658 4.10144 4.50336 4.55578 4.62074 4.78345 4.95690 4.98002 5.03562 5.11519 5.25124 5.32090 5.42314 5.51066 5.54838 5.60237 5.64109 5.72868 5.82298 5.95192 6.06569 6.08525 6.09488 6.42058 6.43683 6.54463 6.60172 6.71023 6.75354 6.80992 7.04105 7.13290 7.17217 7.60999 8.13722 8.23941 8.33792 8.80794 9.45965 10.02534 10.39408 11.38234 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.003702 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.641174 B = 7562.021521 C = 9299.325722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.474 5.474 3 C 0.113 3.887 4 C -0.223 4.223 5 C 0.587 3.413 6 O -0.556 6.556 7 N -0.713 5.713 8 C 0.121 3.879 9 C 0.165 3.835 10 H 0.065 0.935 11 C 0.060 3.940 12 O -0.560 6.560 13 N -0.714 5.714 14 C -0.246 4.246 15 H 0.070 0.930 16 C -0.008 4.008 17 N -0.925 5.925 18 Si 0.904 3.096 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.061 4.061 23 C -0.061 4.061 24 C -0.148 4.148 25 C -0.104 4.104 26 C -0.129 4.129 27 C 0.084 3.916 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.181 0.819 32 H 0.405 0.595 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.027 0.973 37 H 0.363 0.637 38 H 0.389 0.611 39 H 0.255 0.745 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 -13.356 8.967 16.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.156 5.156 3 C -0.019 4.019 4 C -0.233 4.233 5 C 0.375 3.625 6 O -0.436 6.436 7 N -0.364 5.364 8 C -0.003 4.003 9 C 0.054 3.946 10 H 0.083 0.917 11 C -0.022 4.022 12 O -0.363 6.363 13 N -0.355 5.355 14 C -0.377 4.377 15 H 0.088 0.912 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.735 3.265 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.220 1.220 22 C -0.066 4.066 23 C -0.079 4.079 24 C -0.167 4.167 25 C -0.123 4.123 26 C -0.149 4.149 27 C -0.019 4.019 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.198 0.802 32 H 0.241 0.759 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.208 0.792 38 H 0.224 0.776 39 H 0.065 0.935 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.129 -13.969 8.952 16.727 hybrid contribution -0.887 1.505 -0.335 1.779 sum -3.016 -12.464 8.617 15.450 Atomic orbital electron populations 1.22059 0.76646 1.04456 1.03597 1.43583 1.06345 1.04327 1.61327 1.22258 0.89951 0.91693 0.97962 1.20114 0.92222 0.92417 1.18582 1.17159 0.87612 0.81632 0.76147 1.90719 1.24159 1.76983 1.51765 1.45794 1.10968 1.05090 1.74500 1.21502 0.87873 0.88926 1.01996 1.20601 0.89867 0.90821 0.93296 0.91724 1.23024 0.93359 0.99799 0.86002 1.86581 1.42463 1.60037 1.47185 1.42401 1.36717 1.39835 1.16589 1.19266 1.08413 1.09128 1.00908 0.91171 1.24738 0.99960 0.99372 0.96431 1.69695 1.40425 1.40669 1.06416 0.86183 0.81469 0.81623 0.77230 1.20610 1.21901 1.21952 1.18776 0.91997 0.91693 1.04085 1.20723 0.99123 0.91493 0.96570 1.20939 0.96297 0.95410 1.04018 1.20760 0.92343 0.98631 1.00600 1.19942 0.99425 0.88929 1.06606 1.18276 0.89873 0.88237 1.05556 0.90718 0.89349 0.89976 0.80186 0.75942 0.92175 0.90632 0.93401 0.95517 0.79197 0.77612 0.93515 0.84895 0.85969 0.85903 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.99 59.85 0.66 1.24 16 2 N -0.47 -5.85 3.14 -121.59 -0.38 -6.23 16 3 C 0.11 1.56 10.76 -16.62 -0.18 1.38 16 4 C -0.22 -3.74 6.27 -103.31 -0.65 -4.38 16 5 C 0.59 11.10 7.80 -12.75 -0.10 11.00 16 6 O -0.56 -12.02 16.16 5.21 0.08 -11.93 16 7 N -0.71 -12.77 5.38 -61.55 -0.33 -13.10 16 8 C 0.12 2.23 5.12 -4.04 -0.02 2.21 16 9 C 0.17 3.14 2.84 -67.93 -0.19 2.95 16 10 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 11 C 0.06 1.04 6.86 37.16 0.25 1.29 16 12 O -0.56 -10.12 12.64 -35.23 -0.45 -10.56 16 13 N -0.71 -16.82 4.51 -53.43 -0.24 -17.06 16 14 C -0.25 -6.34 9.93 -15.06 -0.15 -6.49 16 15 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 17 N -0.92 -26.82 13.06 55.49 0.72 -26.10 16 18 Si 0.90 21.25 29.55 -169.99 -5.02 16.22 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 C -0.06 -0.99 6.27 -104.96 -0.66 -1.64 16 23 C -0.06 -0.91 9.85 -39.37 -0.39 -1.30 16 24 C -0.15 -1.78 10.03 -39.57 -0.40 -2.18 16 25 C -0.10 -1.12 10.01 -39.56 -0.40 -1.52 16 26 C -0.13 -1.47 9.91 -39.42 -0.39 -1.86 16 27 C 0.08 1.17 6.79 -83.97 -0.57 0.60 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.08 0.50 8.03 -51.93 -0.42 0.09 16 31 H 0.18 2.15 7.38 -52.49 -0.39 1.76 16 32 H 0.40 7.00 7.02 -40.82 -0.29 6.71 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.57 7.39 -51.93 -0.38 1.19 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.36 4.74 9.12 45.56 0.42 5.16 16 38 H 0.39 10.28 7.80 -40.82 -0.32 9.96 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.13 2.10 7.45 -52.49 -0.39 1.71 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.12 1.02 8.02 -52.49 -0.42 0.59 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -34.18 367.91 -8.46 -42.64 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -5.11 Total: 19.60 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -3.27 Total: 0.98 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.23 Total: -62.49 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.36 Total: -22.49 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.18 -8.46 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755644348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.830 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds