Wall clock time and date at job start Tue Mar 31 2020 11:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35469 * 124.78737 * 2 1 4 4 C 1.36380 * 109.77140 * 179.97438 * 3 2 1 5 5 C 1.46914 * 126.76857 * 180.02562 * 4 3 2 6 6 O 1.21673 * 119.99653 * 179.97438 * 5 4 3 7 7 N 1.34769 * 119.99952 * 359.97379 * 5 4 3 8 8 C 1.46500 * 120.00060 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47431 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47881 * 64.99403 * 9 8 7 11 11 C 1.53006 * 109.47447 * 184.99698 * 9 8 7 12 12 O 1.42901 * 109.46801 * 54.99771 * 11 9 8 13 13 N 1.46502 * 109.47233 * 304.99598 * 9 8 7 14 14 C 1.36932 * 120.00300 * 155.00363 * 13 9 8 15 15 H 1.07999 * 119.99982 * 359.97438 * 14 13 9 16 16 C 1.38809 * 119.99904 * 180.02562 * 14 13 9 17 17 N 1.31620 * 120.00489 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00120 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46876 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46946 * 119.99835 * 18 16 14 21 21 H 1.48501 * 109.47325 * 240.00055 * 18 16 14 22 22 C 1.47441 * 106.45759 * 0.02562 * 4 3 2 23 23 C 1.39278 * 133.99977 * 179.97438 * 22 4 3 24 24 C 1.37762 * 119.66596 * 180.02562 * 23 22 4 25 25 C 1.38748 * 120.30272 * 359.97438 * 24 23 22 26 26 C 1.37768 * 120.63623 * 0.02562 * 25 24 23 27 27 C 1.37962 * 124.78920 * 179.70439 * 2 1 3 28 28 H 1.09002 * 109.47391 * 90.02048 * 1 2 3 29 29 H 1.09001 * 109.46813 * 330.02105 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.02232 * 1 2 3 31 31 H 1.08000 * 125.11546 * 359.97438 * 3 2 1 32 32 H 0.97007 * 120.00434 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.46830 * 299.99935 * 8 7 5 34 34 H 1.08998 * 109.47316 * 59.99605 * 8 7 5 35 35 H 1.08996 * 109.47408 * 174.99549 * 11 9 8 36 36 H 1.09000 * 109.46638 * 294.99845 * 11 9 8 37 37 H 0.96704 * 113.99507 * 180.02562 * 12 11 9 38 38 H 0.97004 * 119.99774 * 334.99697 * 13 9 8 39 39 H 0.96998 * 120.00597 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.17121 * 0.02695 * 23 22 4 41 41 H 1.07998 * 119.84474 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.68255 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.03549 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5551 0.7592 0.0006 5 6 4.7094 1.6681 0.0013 6 8 5.8392 1.2165 0.0022 7 7 4.5168 3.0019 0.0009 8 6 5.6678 3.9082 0.0011 9 6 5.1763 5.3570 -0.0001 10 1 4.6476 5.5622 0.9307 11 6 6.3733 6.3018 -0.1256 12 8 7.1327 5.9567 -1.2859 13 7 4.2699 5.5643 -1.1323 14 6 3.3262 6.5552 -1.0814 15 1 3.2497 7.1837 -0.2065 16 6 2.4671 6.7512 -2.1539 17 7 2.5598 5.9849 -3.2201 18 14 1.1792 8.1025 -2.0843 19 1 1.2816 8.8175 -0.7868 20 1 1.4062 9.0604 -3.1960 21 1 -0.1737 7.5042 -2.2149 22 6 3.5922 -0.7147 0.0003 23 6 4.6181 -1.6567 0.0002 24 6 4.3108 -2.9996 -0.0006 25 6 2.9868 -3.4147 -0.0007 26 6 1.9623 -2.4937 -0.0006 27 6 2.2521 -1.1330 0.0058 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 1.8668 2.1268 -0.0004 32 1 3.6160 3.3620 -0.0002 33 1 6.2709 3.7295 0.8913 34 1 6.2715 3.7291 -0.8886 35 1 6.0181 7.3283 -0.2158 36 1 7.0019 6.2113 0.7603 37 1 7.9090 6.5155 -1.4283 38 1 4.3383 4.9996 -1.9180 39 1 1.9597 6.1221 -3.9697 40 1 5.6494 -1.3361 0.0007 41 1 5.1040 -3.7325 -0.0002 42 1 2.7573 -4.4701 -0.0009 43 1 0.9352 -2.8277 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755644348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:46 Heat of formation + Delta-G solvation = -35.223112 kcal Electronic energy + Delta-G solvation = -26095.479448 eV Core-core repulsion = 22333.491996 eV Total energy + Delta-G solvation = -3761.987452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.47149 -40.28774 -38.52027 -38.04009 -36.35177 -35.13306 -33.94952 -33.03743 -31.22197 -30.45758 -29.68084 -27.88070 -26.29539 -25.57059 -23.93496 -23.10578 -22.16587 -21.58475 -20.56118 -19.41170 -18.56651 -18.15241 -17.66893 -17.01184 -16.75273 -16.57960 -16.41536 -16.20045 -15.91950 -15.43969 -15.19180 -14.93245 -14.86306 -14.79120 -14.40214 -14.13697 -13.79409 -13.62830 -13.53473 -13.29737 -13.03197 -12.74643 -12.64468 -12.55298 -12.23331 -12.18794 -11.92603 -11.84416 -11.71225 -11.05809 -10.86088 -10.70537 -10.63002 -9.97192 -9.24185 -8.98960 -8.66430 -7.87545 -5.17331 0.01331 0.58930 1.02816 1.50085 1.52635 1.61071 1.74617 2.35187 2.46458 2.59370 2.99064 3.44565 3.63160 3.69835 3.70123 3.82402 3.92602 4.05519 4.14553 4.27593 4.31951 4.44752 4.46169 4.51997 4.58003 4.62316 4.64093 4.72386 4.73656 4.80114 4.92834 5.01351 5.13687 5.25700 5.47884 5.54321 5.58349 5.60312 5.71901 5.73321 6.13640 6.25027 6.30393 6.70500 7.08251 7.36092 7.38667 8.10558 8.37183 9.35257 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.003702 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.641174 B = 7562.021521 C = 9299.325722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.467 5.467 3 C 0.130 3.870 4 C -0.270 4.270 5 C 0.583 3.417 6 O -0.596 6.596 7 N -0.708 5.708 8 C 0.132 3.868 9 C 0.163 3.837 10 H 0.082 0.918 11 C 0.064 3.936 12 O -0.584 6.584 13 N -0.722 5.722 14 C -0.234 4.234 15 H 0.082 0.918 16 C -0.069 4.069 17 N -0.966 5.966 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.304 1.304 21 H -0.294 1.294 22 C -0.094 4.094 23 C -0.098 4.098 24 C -0.139 4.139 25 C -0.102 4.102 26 C -0.120 4.120 27 C 0.070 3.930 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.197 0.803 32 H 0.408 0.592 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.385 0.615 38 H 0.372 0.628 39 H 0.248 0.752 40 H 0.107 0.893 41 H 0.145 0.855 42 H 0.163 0.837 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 -14.230 10.493 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.147 5.147 3 C -0.004 4.004 4 C -0.280 4.280 5 C 0.373 3.627 6 O -0.479 6.479 7 N -0.358 5.358 8 C 0.008 3.992 9 C 0.054 3.946 10 H 0.099 0.901 11 C -0.017 4.017 12 O -0.391 6.391 13 N -0.362 5.362 14 C -0.366 4.366 15 H 0.100 0.900 16 C -0.262 4.262 17 N -0.617 5.617 18 Si 0.798 3.202 19 H -0.188 1.188 20 H -0.232 1.232 21 H -0.221 1.221 22 C -0.099 4.099 23 C -0.117 4.117 24 C -0.158 4.158 25 C -0.121 4.121 26 C -0.140 4.140 27 C -0.034 4.034 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.214 0.786 32 H 0.244 0.756 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.233 0.767 38 H 0.204 0.796 39 H 0.056 0.944 40 H 0.126 0.874 41 H 0.163 0.837 42 H 0.180 0.820 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.190 -14.829 10.537 18.668 hybrid contribution -0.208 1.677 -0.758 1.853 sum -4.398 -13.152 9.779 16.969 Atomic orbital electron populations 1.22439 0.73712 1.06590 1.04792 1.43871 1.07944 1.03348 1.59544 1.22438 0.89294 0.92859 0.95843 1.20053 0.92635 0.92837 1.22506 1.17571 0.87946 0.81966 0.75230 1.90676 1.25802 1.77562 1.53814 1.45730 1.10921 1.04892 1.74303 1.21345 0.87909 0.88754 1.01235 1.20838 0.90132 0.91402 0.92276 0.90061 1.22889 0.93227 0.98257 0.87319 1.86538 1.43725 1.61110 1.47735 1.42505 1.37429 1.39202 1.17094 1.19654 1.07678 1.08568 1.00666 0.89982 1.25459 1.02454 1.01809 0.96477 1.69864 1.41730 1.42863 1.07226 0.85162 0.78917 0.78876 0.77259 1.18830 1.23215 1.22115 1.19082 0.93783 0.91631 1.05364 1.20726 0.98038 0.93152 0.99743 1.21271 0.98115 0.94365 1.02031 1.21235 0.91295 1.00578 0.98954 1.20422 1.01460 0.87675 1.04489 1.18573 0.89066 0.89604 1.06133 0.89905 0.87698 0.87537 0.78601 0.75571 0.90728 0.93517 0.94313 0.91711 0.76716 0.79638 0.94351 0.87437 0.83704 0.81974 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 10.99 127.77 1.40 2.22 16 2 N -0.47 -10.79 3.14 -538.61 -1.69 -12.49 16 3 C 0.13 3.59 10.76 83.70 0.90 4.49 16 4 C -0.27 -9.47 6.27 -19.01 -0.12 -9.59 16 5 C 0.58 23.40 7.80 86.52 0.67 24.08 16 6 O -0.60 -27.65 16.16 -4.26 -0.07 -27.72 16 7 N -0.71 -26.30 5.38 -466.87 -2.51 -28.81 16 8 C 0.13 4.95 5.12 86.38 0.44 5.39 16 9 C 0.16 6.09 2.84 44.99 0.13 6.22 16 10 H 0.08 2.79 8.08 -2.39 -0.02 2.77 16 11 C 0.06 2.13 6.86 71.98 0.49 2.62 16 12 O -0.58 -20.90 12.64 -148.98 -1.88 -22.78 16 13 N -0.72 -34.22 4.51 -322.94 -1.46 -35.67 16 14 C -0.23 -11.92 9.93 84.03 0.83 -11.08 16 15 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 16 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 17 N -0.97 -57.18 13.06 21.65 0.28 -56.90 16 18 Si 0.97 43.64 29.55 68.60 2.03 45.67 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 C -0.09 -3.16 6.27 -20.08 -0.13 -3.29 16 23 C -0.10 -3.11 9.85 22.41 0.22 -2.89 16 24 C -0.14 -3.23 10.03 22.28 0.22 -3.01 16 25 C -0.10 -1.88 10.01 22.28 0.22 -1.65 16 26 C -0.12 -2.37 9.91 22.37 0.22 -2.15 16 27 C 0.07 1.85 6.79 38.91 0.26 2.12 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.02 8.13 -2.39 -0.02 1.00 16 30 H 0.11 0.86 8.03 -2.38 -0.02 0.84 16 31 H 0.20 4.58 7.38 -2.91 -0.02 4.56 16 32 H 0.41 14.44 7.02 -92.70 -0.65 13.79 16 33 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.05 2.03 7.39 -2.39 -0.02 2.01 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.38 9.70 9.12 -74.05 -0.68 9.02 16 38 H 0.37 20.19 7.80 -92.71 -0.72 19.47 16 39 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.11 3.81 7.45 -2.91 -0.02 3.79 16 41 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 43 H 0.15 1.88 8.02 -2.91 -0.02 1.85 16 Total: -1.00 -77.42 367.91 -0.04 -77.46 By element: Atomic # 1 Polarization: 52.02 SS G_CDS: -0.99 Total: 51.03 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.25 Total: 10.20 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -5.38 Total: -133.87 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -1.95 Total: -50.50 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -77.42 -0.04 -77.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755644348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.236 kcal (2) G-P(sol) polarization free energy of solvation -77.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds