Wall clock time and date at job start Tue Mar 31 2020 11:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39725 * 119.58942 * 253.13190 * 3 2 1 5 5 C 1.37979 * 119.19910 * 179.97438 * 4 3 2 6 6 C 1.40229 * 118.40105 * 0.02562 * 5 4 3 7 7 C 1.47673 * 120.44267 * 179.97438 * 6 5 4 8 8 O 1.21580 * 119.99698 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00493 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00395 * 179.72448 * 9 7 6 11 11 C 1.52995 * 109.47212 * 180.27788 * 10 9 7 12 12 N 1.46505 * 109.46764 * 180.02562 * 11 10 9 13 13 C 1.36941 * 119.99650 * 90.00521 * 12 11 10 14 14 H 1.07997 * 119.99774 * 325.90038 * 13 12 11 15 15 C 1.38813 * 119.99878 * 145.91245 * 13 12 11 16 16 N 1.31620 * 119.99744 * 335.47614 * 15 13 12 17 17 Si 1.86793 * 120.00440 * 155.47930 * 15 13 12 18 18 H 1.48503 * 109.46869 * 59.99345 * 17 15 13 19 19 H 1.48491 * 109.47457 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46870 * 300.00115 * 17 15 13 21 21 C 1.46497 * 120.00163 * 269.99764 * 12 11 10 22 22 C 1.52997 * 109.46947 * 94.39704 * 21 12 11 23 23 O 1.42906 * 109.46783 * 65.00294 * 22 21 12 24 24 C 1.42901 * 113.99605 * 179.97438 * 23 22 21 25 25 C 1.39655 * 119.11918 * 0.27627 * 6 5 4 26 26 N 1.31489 * 120.71603 * 359.42697 * 25 6 5 27 27 H 4.51261 * 14.17499 * 359.97438 * 4 2 1 28 28 H 1.07997 * 120.40187 * 359.96031 * 4 3 2 29 29 H 1.07999 * 120.79488 * 179.97438 * 5 4 3 30 30 H 0.97000 * 119.99780 * 0.02562 * 9 7 6 31 31 H 1.09000 * 109.47390 * 300.28543 * 10 9 7 32 32 H 1.09006 * 109.46705 * 60.28136 * 10 9 7 33 33 H 1.08999 * 109.47049 * 300.00081 * 11 10 9 34 34 H 1.08997 * 109.47143 * 60.00439 * 11 10 9 35 35 H 0.97003 * 119.99835 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47271 * 214.40322 * 21 12 11 37 37 H 1.08999 * 109.46965 * 334.39950 * 21 12 11 38 38 H 1.09003 * 109.47234 * 184.99845 * 22 21 12 39 39 H 1.09000 * 109.47260 * 305.00489 * 22 21 12 40 40 H 1.09007 * 109.47126 * 60.00453 * 24 23 22 41 41 H 1.09006 * 109.46987 * 179.97438 * 24 23 22 42 42 H 1.08993 * 109.47492 * 300.00395 * 24 23 22 43 43 H 1.08001 * 119.64554 * 179.69902 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2958 0.3535 1.1628 5 6 4.6755 0.3509 1.1539 6 6 5.3342 -0.0080 -0.0308 7 6 6.8097 -0.0255 -0.0908 8 8 7.4615 0.2721 0.8914 9 7 7.4337 -0.3724 -1.2339 10 6 8.8973 -0.3839 -1.2952 11 6 9.3459 -0.8034 -2.6965 12 7 10.8096 -0.8155 -2.7575 13 6 11.4984 -1.9569 -2.4445 14 1 11.1236 -2.6213 -1.6801 15 6 12.6786 -2.2597 -3.1098 16 7 12.8992 -1.7736 -4.3128 17 14 13.9535 -3.3571 -2.2977 18 1 13.3529 -4.6845 -2.0101 19 1 15.1137 -3.5262 -3.2089 20 1 14.4069 -2.7336 -1.0284 21 6 11.5363 0.3934 -3.1533 22 6 11.9459 1.1745 -1.9031 23 8 12.8797 0.4034 -1.1445 24 6 13.3290 1.0461 0.0502 25 6 4.5764 -0.3426 -1.1552 26 7 3.2625 -0.3339 -1.1064 27 1 -1.0500 0.0004 -0.0005 28 1 2.7555 0.6253 2.0575 29 1 5.2346 0.6196 2.0380 30 1 6.9136 -0.6102 -2.0175 31 1 9.2781 0.6134 -1.0751 32 1 9.2860 -1.0912 -0.5624 33 1 8.9651 -1.8007 -2.9165 34 1 8.9572 -0.0962 -3.4292 35 1 13.7237 -1.9855 -4.7778 36 1 12.4273 0.1140 -3.7154 37 1 10.8940 1.0158 -3.7764 38 1 12.4078 2.1167 -2.1984 39 1 11.0636 1.3769 -1.2959 40 1 12.4756 1.2462 0.6982 41 1 14.0342 0.3965 0.5690 42 1 13.8196 1.9853 -0.2049 43 1 5.0750 -0.6156 -2.0735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755841749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:39 Heat of formation + Delta-G solvation = 42.159230 kcal Electronic energy + Delta-G solvation = -25476.289268 eV Core-core repulsion = 21717.657366 eV Total energy + Delta-G solvation = -3758.631902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.83934 -39.07650 -37.25240 -35.80654 -34.44989 -34.16507 -32.84940 -31.64024 -30.98560 -29.37043 -27.52174 -25.60394 -25.31231 -24.01424 -23.69194 -21.84752 -20.93554 -20.24490 -19.71319 -17.96831 -17.08200 -16.73879 -16.27456 -15.77630 -15.37627 -15.27060 -15.09181 -14.85775 -14.53944 -14.42839 -14.00070 -13.80303 -13.59244 -13.43387 -13.28327 -12.85176 -12.66896 -11.96365 -11.79976 -11.63490 -11.27703 -11.19290 -10.86546 -10.73621 -10.68125 -10.56855 -10.30605 -10.29496 -10.03186 -9.97358 -9.72333 -9.70667 -9.25130 -8.87547 -8.66521 -8.39285 -6.63161 -5.72247 -3.25609 0.01669 0.84781 2.21539 2.23449 3.07378 3.17732 3.47489 3.48843 3.52411 3.60794 3.70108 4.20854 4.43891 4.54774 4.60361 4.73103 4.75471 4.76716 5.14367 5.31946 5.37552 5.53552 5.67753 5.68180 5.75500 5.81238 5.84741 5.90968 6.09312 6.12637 6.18136 6.27620 6.29377 6.51639 6.60944 6.63483 6.67209 6.88920 7.00914 7.40509 7.57214 7.67044 7.88444 8.13008 8.22872 8.55833 9.20807 9.87011 10.37336 11.29448 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.002548 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.860082 B =10984.341267 C =11501.872361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.151 4.151 3 C 0.241 3.759 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.174 4.174 7 C 0.555 3.445 8 O -0.536 6.536 9 N -0.714 5.714 10 C 0.094 3.906 11 C 0.137 3.863 12 N -0.570 5.570 13 C -0.247 4.247 14 H 0.058 0.942 15 C 0.023 3.977 16 N -0.890 5.890 17 Si 0.898 3.102 18 H -0.286 1.286 19 H -0.294 1.294 20 H -0.280 1.280 21 C 0.136 3.864 22 C 0.046 3.954 23 O -0.351 6.351 24 C 0.029 3.971 25 C 0.141 3.859 26 N -0.471 5.471 27 H 0.231 0.769 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.396 0.604 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.254 0.746 36 H 0.108 0.892 37 H 0.041 0.959 38 H 0.023 0.977 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.025 0.975 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.642 6.609 7.324 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.107 3.893 4 C -0.172 4.172 5 C -0.042 4.042 6 C -0.179 4.179 7 C 0.340 3.660 8 O -0.414 6.414 9 N -0.365 5.365 10 C -0.031 4.031 11 C 0.009 3.991 12 N -0.289 5.289 13 C -0.376 4.376 14 H 0.076 0.924 15 C -0.176 4.176 16 N -0.533 5.533 17 Si 0.728 3.272 18 H -0.212 1.212 19 H -0.220 1.220 20 H -0.206 1.206 21 C 0.010 3.990 22 C -0.033 4.033 23 O -0.268 6.268 24 C -0.068 4.068 25 C -0.019 4.019 26 N -0.179 5.179 27 H 0.247 0.753 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.231 0.769 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.125 0.875 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.345 6.353 7.053 20.655 hybrid contribution 0.751 -0.003 1.052 1.292 sum -17.595 6.350 8.104 20.386 Atomic orbital electron populations 1.24971 0.95642 0.96675 0.97973 1.19287 0.91038 1.02743 1.02057 1.16740 0.88188 0.94756 0.89651 1.22030 0.94414 1.01730 0.99038 1.21702 0.93498 0.91275 0.97745 1.21274 0.95233 1.05139 0.96269 1.17944 0.86286 0.77990 0.83742 1.90797 1.66781 1.48612 1.35174 1.46060 1.09372 1.68110 1.12988 1.22585 0.75908 1.01926 1.02660 1.21013 0.87254 0.99446 0.91432 1.43578 0.98187 1.08556 1.78612 1.18774 1.04869 0.99949 1.14018 0.92425 1.24888 1.00214 0.98315 0.94219 1.69962 1.25534 1.47522 1.10249 0.86456 0.81391 0.79890 0.79449 1.21228 1.22011 1.20597 1.21167 0.99445 0.86140 0.92255 1.23455 0.90631 0.93606 0.95611 1.88244 1.61562 1.42676 1.34345 1.22636 0.98239 0.96981 0.88978 1.23005 0.88667 0.92737 0.97495 1.67757 1.09718 1.13669 1.26798 0.75255 0.83605 0.82802 0.76885 0.92053 0.91236 0.92531 0.94197 0.93664 0.87467 0.94071 0.95869 0.95334 0.95210 0.90804 0.95625 0.81533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 19.25 29.55 0.57 -0.34 16 2 C -0.15 -1.46 13.43 -38.84 -0.52 -1.98 16 3 C 0.24 2.63 6.59 -84.91 -0.56 2.07 16 4 C -0.15 -1.39 9.77 -39.12 -0.38 -1.77 16 5 C -0.02 -0.17 9.70 -38.93 -0.38 -0.54 16 6 C -0.17 -2.04 5.89 -104.77 -0.62 -2.66 16 7 C 0.56 8.13 7.77 -12.41 -0.10 8.03 16 8 O -0.54 -9.85 16.41 5.30 0.09 -9.76 16 9 N -0.71 -9.84 5.51 -61.30 -0.34 -10.18 16 10 C 0.09 1.65 6.00 -4.04 -0.02 1.62 16 11 C 0.14 2.57 5.82 -4.04 -0.02 2.55 16 12 N -0.57 -13.40 2.45 -173.24 -0.42 -13.82 16 13 C -0.25 -6.58 8.75 -15.06 -0.13 -6.71 16 14 H 0.06 1.56 7.94 -52.49 -0.42 1.15 16 15 C 0.02 0.64 4.95 -17.43 -0.09 0.56 16 16 N -0.89 -25.23 11.37 55.49 0.63 -24.60 16 17 Si 0.90 22.25 29.62 -169.99 -5.03 17.22 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 C 0.14 3.08 5.83 -4.04 -0.02 3.05 16 22 C 0.05 0.94 6.28 37.16 0.23 1.18 16 23 O -0.35 -7.94 9.97 -35.23 -0.35 -8.30 16 24 C 0.03 0.52 11.01 101.05 1.11 1.63 16 25 C 0.14 1.50 10.70 -17.17 -0.18 1.31 16 26 N -0.47 -5.59 10.27 -10.78 -0.11 -5.70 16 27 H 0.23 0.55 7.80 -54.09 -0.42 0.12 16 28 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.15 1.49 7.73 -52.49 -0.41 1.08 16 30 H 0.40 4.19 6.52 -40.82 -0.27 3.92 16 31 H 0.06 1.15 6.46 -51.93 -0.34 0.81 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 34 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 35 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.11 2.81 5.38 -51.93 -0.28 2.53 16 37 H 0.04 0.83 7.84 -51.93 -0.41 0.42 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.03 0.56 6.46 -51.93 -0.34 0.23 16 40 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.17 1.33 6.40 -52.49 -0.34 1.00 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -33.67 374.18 -6.72 -40.39 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.70 Total: 1.12 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.11 Total: 7.99 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.24 Total: -54.29 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.26 Total: -18.06 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.67 -6.72 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755841749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.549 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds