Wall clock time and date at job start Tue Mar 31 2020 11:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39725 * 119.58942 * 253.13190 * 3 2 1 5 5 C 1.37979 * 119.19910 * 179.97438 * 4 3 2 6 6 C 1.40229 * 118.40105 * 0.02562 * 5 4 3 7 7 C 1.47673 * 120.44267 * 179.97438 * 6 5 4 8 8 O 1.21580 * 119.99698 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00493 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00395 * 179.72448 * 9 7 6 11 11 C 1.52995 * 109.47212 * 180.27788 * 10 9 7 12 12 N 1.46505 * 109.46764 * 180.02562 * 11 10 9 13 13 C 1.36941 * 119.99650 * 90.00521 * 12 11 10 14 14 H 1.07997 * 119.99774 * 325.90038 * 13 12 11 15 15 C 1.38813 * 119.99878 * 145.91245 * 13 12 11 16 16 N 1.31620 * 119.99744 * 335.47614 * 15 13 12 17 17 Si 1.86793 * 120.00440 * 155.47930 * 15 13 12 18 18 H 1.48503 * 109.46869 * 59.99345 * 17 15 13 19 19 H 1.48491 * 109.47457 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46870 * 300.00115 * 17 15 13 21 21 C 1.46497 * 120.00163 * 269.99764 * 12 11 10 22 22 C 1.52997 * 109.46947 * 94.39704 * 21 12 11 23 23 O 1.42906 * 109.46783 * 65.00294 * 22 21 12 24 24 C 1.42901 * 113.99605 * 179.97438 * 23 22 21 25 25 C 1.39655 * 119.11918 * 0.27627 * 6 5 4 26 26 N 1.31489 * 120.71603 * 359.42697 * 25 6 5 27 27 H 4.51261 * 14.17499 * 359.97438 * 4 2 1 28 28 H 1.07997 * 120.40187 * 359.96031 * 4 3 2 29 29 H 1.07999 * 120.79488 * 179.97438 * 5 4 3 30 30 H 0.97000 * 119.99780 * 0.02562 * 9 7 6 31 31 H 1.09000 * 109.47390 * 300.28543 * 10 9 7 32 32 H 1.09006 * 109.46705 * 60.28136 * 10 9 7 33 33 H 1.08999 * 109.47049 * 300.00081 * 11 10 9 34 34 H 1.08997 * 109.47143 * 60.00439 * 11 10 9 35 35 H 0.97003 * 119.99835 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47271 * 214.40322 * 21 12 11 37 37 H 1.08999 * 109.46965 * 334.39950 * 21 12 11 38 38 H 1.09003 * 109.47234 * 184.99845 * 22 21 12 39 39 H 1.09000 * 109.47260 * 305.00489 * 22 21 12 40 40 H 1.09007 * 109.47126 * 60.00453 * 24 23 22 41 41 H 1.09006 * 109.46987 * 179.97438 * 24 23 22 42 42 H 1.08993 * 109.47492 * 300.00395 * 24 23 22 43 43 H 1.08001 * 119.64554 * 179.69902 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2958 0.3535 1.1628 5 6 4.6755 0.3509 1.1539 6 6 5.3342 -0.0080 -0.0308 7 6 6.8097 -0.0255 -0.0908 8 8 7.4615 0.2721 0.8914 9 7 7.4337 -0.3724 -1.2339 10 6 8.8973 -0.3839 -1.2952 11 6 9.3459 -0.8034 -2.6965 12 7 10.8096 -0.8155 -2.7575 13 6 11.4984 -1.9569 -2.4445 14 1 11.1236 -2.6213 -1.6801 15 6 12.6786 -2.2597 -3.1098 16 7 12.8992 -1.7736 -4.3128 17 14 13.9535 -3.3571 -2.2977 18 1 13.3529 -4.6845 -2.0101 19 1 15.1137 -3.5262 -3.2089 20 1 14.4069 -2.7336 -1.0284 21 6 11.5363 0.3934 -3.1533 22 6 11.9459 1.1745 -1.9031 23 8 12.8797 0.4034 -1.1445 24 6 13.3290 1.0461 0.0502 25 6 4.5764 -0.3426 -1.1552 26 7 3.2625 -0.3339 -1.1064 27 1 -1.0500 0.0004 -0.0005 28 1 2.7555 0.6253 2.0575 29 1 5.2346 0.6196 2.0380 30 1 6.9136 -0.6102 -2.0175 31 1 9.2781 0.6134 -1.0751 32 1 9.2860 -1.0912 -0.5624 33 1 8.9651 -1.8007 -2.9165 34 1 8.9572 -0.0962 -3.4292 35 1 13.7237 -1.9855 -4.7778 36 1 12.4273 0.1140 -3.7154 37 1 10.8940 1.0158 -3.7764 38 1 12.4078 2.1167 -2.1984 39 1 11.0636 1.3769 -1.2959 40 1 12.4756 1.2462 0.6982 41 1 14.0342 0.3965 0.5690 42 1 13.8196 1.9853 -0.2049 43 1 5.0750 -0.6156 -2.0735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755841749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:38 Heat of formation + Delta-G solvation = 19.073521 kcal Electronic energy + Delta-G solvation = -25477.290340 eV Core-core repulsion = 21717.657366 eV Total energy + Delta-G solvation = -3759.632974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74405 -40.19632 -38.90207 -37.41321 -35.82401 -34.96489 -33.66379 -33.37531 -32.04767 -30.86400 -29.10746 -27.15947 -26.43708 -25.38965 -24.71769 -23.33922 -22.24573 -21.82462 -20.40143 -19.10563 -18.59553 -17.97988 -17.36265 -16.92325 -16.73215 -16.67134 -16.40671 -16.31938 -15.88911 -15.63829 -15.43997 -15.20031 -14.91534 -14.76716 -14.30800 -14.25516 -13.71163 -13.57961 -13.41042 -13.02109 -12.67700 -12.46962 -12.38458 -12.32658 -12.28213 -11.94971 -11.89057 -11.71523 -11.52812 -11.38393 -11.10616 -10.65799 -10.43937 -10.36926 -10.17551 -9.88765 -8.57605 -7.75421 -5.30592 -0.79935 0.07774 1.40026 1.47209 1.52340 1.60066 1.61999 2.00962 2.14958 2.60814 2.86839 2.90499 3.21790 3.37200 3.47146 3.58550 3.70796 3.80198 3.94383 4.02690 4.22934 4.28659 4.42142 4.49344 4.51773 4.58048 4.68003 4.72469 4.73698 4.81390 4.89787 4.93424 4.96891 5.02314 5.11832 5.18958 5.39097 5.44460 5.74014 5.84855 6.43373 6.45286 6.46428 6.63328 6.67411 7.09451 7.24459 7.93636 8.39751 9.21561 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.002548 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.860082 B =10984.341267 C =11501.872361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.218 4.218 3 C 0.237 3.763 4 C -0.146 4.146 5 C -0.017 4.017 6 C -0.190 4.190 7 C 0.559 3.441 8 O -0.578 6.578 9 N -0.703 5.703 10 C 0.117 3.883 11 C 0.140 3.860 12 N -0.586 5.586 13 C -0.242 4.242 14 H 0.045 0.955 15 C -0.019 4.019 16 N -0.913 5.913 17 Si 0.941 3.059 18 H -0.280 1.280 19 H -0.295 1.295 20 H -0.287 1.287 21 C 0.134 3.866 22 C 0.053 3.947 23 O -0.392 6.392 24 C 0.026 3.974 25 C 0.147 3.853 26 N -0.496 5.496 27 H 0.273 0.727 28 H 0.174 0.826 29 H 0.158 0.842 30 H 0.414 0.586 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.306 7.381 7.823 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.219 4.219 3 C 0.103 3.897 4 C -0.166 4.166 5 C -0.043 4.043 6 C -0.195 4.195 7 C 0.346 3.654 8 O -0.459 6.459 9 N -0.355 5.355 10 C -0.009 4.009 11 C 0.013 3.987 12 N -0.306 5.306 13 C -0.372 4.372 14 H 0.063 0.937 15 C -0.216 4.216 16 N -0.558 5.558 17 Si 0.771 3.229 18 H -0.206 1.206 19 H -0.222 1.222 20 H -0.214 1.214 21 C 0.008 3.992 22 C -0.026 4.026 23 O -0.311 6.311 24 C -0.071 4.071 25 C -0.013 4.013 26 N -0.204 5.204 27 H 0.288 0.712 28 H 0.192 0.808 29 H 0.175 0.825 30 H 0.252 0.748 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -21.055 7.124 7.542 23.472 hybrid contribution 1.355 -0.197 0.953 1.669 sum -19.700 6.926 8.495 22.544 Atomic orbital electron populations 1.26001 0.96323 0.93089 0.94826 1.19607 0.91539 1.05705 1.05019 1.17141 0.89283 0.93599 0.89721 1.22259 0.93749 1.00881 0.99669 1.21853 0.94205 0.90786 0.97459 1.21022 0.93194 1.07703 0.97607 1.18310 0.87405 0.76694 0.82946 1.90772 1.67953 1.50610 1.36597 1.45807 1.07955 1.67933 1.13827 1.22013 0.77918 1.00242 1.00718 1.21070 0.84775 1.00257 0.92595 1.43725 1.00046 1.08080 1.78748 1.18827 1.05155 1.00328 1.12922 0.93688 1.25348 1.01588 0.99923 0.94717 1.70057 1.25557 1.49055 1.11087 0.85764 0.79873 0.79018 0.78240 1.20609 1.22160 1.21420 1.21124 0.98541 0.86347 0.93236 1.23329 0.90849 0.93766 0.94641 1.88167 1.62176 1.44647 1.36113 1.22788 0.98768 0.97910 0.87588 1.23267 0.88478 0.91733 0.97792 1.67816 1.10005 1.14891 1.27721 0.71162 0.80831 0.82471 0.74804 0.93061 0.94391 0.92612 0.91535 0.94230 0.90914 0.91862 0.93578 0.94734 0.94481 0.90297 0.93283 0.79482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 19.25 74.32 1.43 0.58 16 2 C -0.22 -3.78 13.43 30.02 0.40 -3.38 16 3 C 0.24 4.86 6.59 40.58 0.27 5.12 16 4 C -0.15 -2.47 9.77 22.57 0.22 -2.25 16 5 C -0.02 -0.34 9.70 22.69 0.22 -0.12 16 6 C -0.19 -4.35 5.89 -19.96 -0.12 -4.47 16 7 C 0.56 16.27 7.77 86.74 0.67 16.94 16 8 O -0.58 -21.57 16.41 -3.97 -0.07 -21.63 16 9 N -0.70 -18.86 5.51 -466.13 -2.57 -21.43 16 10 C 0.12 4.08 6.00 86.38 0.52 4.60 16 11 C 0.14 5.15 5.82 86.38 0.50 5.65 16 12 N -0.59 -27.51 2.45 -702.02 -1.72 -29.23 16 13 C -0.24 -13.06 8.75 84.03 0.73 -12.32 16 14 H 0.05 2.50 7.94 -2.91 -0.02 2.48 16 15 C -0.02 -1.03 4.95 84.86 0.42 -0.61 16 16 N -0.91 -52.58 11.37 21.65 0.25 -52.33 16 17 Si 0.94 46.35 29.62 68.60 2.03 48.39 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 19 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 20 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 21 C 0.13 5.99 5.83 86.38 0.50 6.49 16 22 C 0.05 2.12 6.28 71.98 0.45 2.57 16 23 O -0.39 -17.69 9.97 -148.98 -1.48 -19.17 16 24 C 0.03 0.90 11.01 113.37 1.25 2.15 16 25 C 0.15 2.97 10.70 85.09 0.91 3.88 16 26 N -0.50 -11.25 10.27 -188.03 -1.93 -13.18 16 27 H 0.27 -0.11 7.80 -4.42 -0.03 -0.14 16 28 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.16 2.99 7.73 -2.91 -0.02 2.97 16 30 H 0.41 8.11 6.52 -92.71 -0.60 7.51 16 31 H 0.05 1.90 6.46 -2.39 -0.02 1.89 16 32 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.06 2.06 8.04 -2.39 -0.02 2.04 16 34 H 0.07 2.12 7.86 -2.39 -0.02 2.10 16 35 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.07 3.86 5.38 -2.39 -0.01 3.85 16 37 H 0.06 2.48 7.84 -2.39 -0.02 2.46 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.03 1.33 6.46 -2.39 -0.02 1.32 16 40 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.19 2.69 6.40 -2.91 -0.02 2.67 16 Total: -1.00 -74.65 374.18 3.32 -71.33 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.43 Total: 12.42 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 8.39 Total: 24.84 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -5.97 Total: -116.17 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -1.55 Total: -40.80 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.39 kcal Total: -74.65 3.32 -71.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755841749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.401 kcal (2) G-P(sol) polarization free energy of solvation -74.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds