Wall clock time and date at job start Tue Mar 31 2020 11:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 120.00139 * 2 1 4 4 O 1.21516 * 119.99985 * 355.07119 * 3 2 1 5 5 C 1.48218 * 120.00297 * 175.07276 * 3 2 1 6 6 C 1.39630 * 119.65847 * 186.41887 * 5 3 2 7 7 C 1.38543 * 119.24896 * 179.76998 * 6 5 3 8 8 C 1.38587 * 118.55052 * 0.50108 * 7 6 5 9 9 C 1.39589 * 119.24804 * 359.74537 * 8 7 6 10 10 C 1.48225 * 119.65146 * 179.97438 * 9 8 7 11 11 O 1.21507 * 120.00282 * 7.61650 * 10 9 8 12 12 N 1.34774 * 119.99727 * 187.61530 * 10 9 8 13 13 C 1.46500 * 119.99942 * 176.90290 * 12 10 9 14 14 C 1.50701 * 109.47041 * 90.00442 * 13 12 10 15 15 H 1.08000 * 119.99612 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99879 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99623 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00308 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46944 * 90.00041 * 18 16 14 20 20 H 1.48497 * 109.47220 * 210.00102 * 18 16 14 21 21 H 1.48502 * 109.47133 * 330.00069 * 18 16 14 22 22 C 1.46499 * 120.00206 * 356.90636 * 12 10 9 23 23 C 1.53009 * 109.47109 * 92.97275 * 22 12 10 24 24 C 1.52999 * 117.49687 * 243.37592 * 23 22 12 25 25 C 1.52996 * 117.49821 * 174.71800 * 23 22 12 26 26 N 1.32347 * 119.65149 * 6.69859 * 5 3 2 27 27 H 1.08997 * 109.47131 * 59.99537 * 1 2 3 28 28 H 1.08996 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47172 * 300.00050 * 1 2 3 30 30 H 0.96995 * 119.99739 * 179.97438 * 2 1 3 31 31 H 1.08004 * 120.37284 * 359.97438 * 6 5 3 32 32 H 1.08003 * 120.72398 * 180.22535 * 7 6 5 33 33 H 1.07997 * 120.37759 * 179.76912 * 8 7 6 34 34 H 1.09002 * 109.47073 * 210.00142 * 13 12 10 35 35 H 1.09000 * 109.47361 * 330.00058 * 13 12 10 36 36 H 0.97007 * 119.99489 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47347 * 212.97118 * 22 12 10 38 38 H 1.08999 * 109.47237 * 332.97426 * 22 12 10 39 39 H 1.08999 * 115.54732 * 29.04674 * 23 22 12 40 40 H 1.09004 * 117.49860 * 0.02562 * 24 23 22 41 41 H 1.09001 * 117.49638 * 145.02396 * 24 23 22 42 42 H 1.08999 * 117.50126 * 214.97891 * 25 23 22 43 43 H 1.09003 * 117.49978 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5348 2.2176 -0.0904 5 6 3.6170 1.1696 0.1102 6 6 4.2978 2.3812 0.2450 7 6 5.6791 2.3732 0.3522 8 6 6.3397 1.1556 0.3110 9 6 5.5978 -0.0183 0.1690 10 6 6.2952 -1.3254 0.1233 11 8 7.4879 -1.3859 0.3470 12 7 5.6062 -2.4469 -0.1663 13 6 6.3068 -3.7287 -0.2784 14 6 6.3429 -4.4010 1.0699 15 1 5.8896 -3.9212 1.9247 16 6 6.9554 -5.6279 1.2122 17 7 6.9873 -6.2144 2.3890 18 14 7.7399 -6.4574 -0.2663 19 1 9.1607 -6.0386 -0.3726 20 1 7.6694 -7.9315 -0.1021 21 1 7.0135 -6.0613 -1.4994 22 6 4.1567 -2.3844 -0.3692 23 6 3.8576 -2.2003 -1.8585 24 6 3.1554 -0.9092 -2.2837 25 6 2.3914 -2.2356 -2.2942 26 7 4.2781 0.0236 0.0743 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.9500 -0.8400 0.0004 31 1 3.7535 3.3138 0.2687 32 1 6.2294 3.2962 0.4610 33 1 7.4161 1.1154 0.3881 34 1 5.7833 -4.3680 -0.9893 35 1 7.3255 -3.5568 -0.6261 36 1 7.4179 -7.0779 2.4890 37 1 3.7004 -3.3102 -0.0187 38 1 3.7475 -1.5431 0.1902 39 1 4.5959 -2.6202 -2.5416 40 1 2.9068 -0.1907 -1.5026 41 1 3.4314 -0.4799 -3.2468 42 1 2.1651 -2.6783 -3.2642 43 1 1.6398 -2.3904 -1.5200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771623467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:49 Heat of formation + Delta-G solvation = 35.994757 kcal Electronic energy + Delta-G solvation = -27558.693833 eV Core-core repulsion = 23799.794619 eV Total energy + Delta-G solvation = -3758.899214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25858 -39.52578 -38.44451 -37.33449 -34.91925 -34.60921 -33.02710 -32.41992 -31.71307 -28.49411 -27.47398 -26.50803 -24.58992 -24.24877 -22.55250 -22.07965 -21.04275 -20.51363 -19.75910 -18.06313 -17.23524 -16.93200 -16.40699 -16.28790 -15.91950 -15.70260 -15.10129 -14.90225 -14.78217 -14.36391 -14.11755 -13.87972 -13.65483 -13.41274 -13.17290 -12.83936 -12.54194 -12.42261 -12.39077 -12.19443 -11.65625 -11.48429 -11.37115 -11.06551 -10.59232 -10.56442 -10.35402 -10.15510 -10.09148 -9.91295 -9.70626 -9.51109 -9.40435 -9.23739 -8.83586 -8.60494 -7.77480 -6.10257 -4.09274 0.38192 0.76359 2.39530 2.85681 3.17282 3.27615 3.33279 3.35238 3.47770 3.84644 3.95766 3.99891 4.37868 4.47656 4.63252 4.76192 4.80911 4.96180 5.02580 5.10351 5.14429 5.23262 5.26901 5.29113 5.34890 5.56391 5.66980 5.72845 5.78110 5.87220 5.99653 6.02873 6.08309 6.14562 6.20771 6.25068 6.64726 6.72956 6.87425 7.06380 7.29475 7.42437 7.57574 7.88473 8.13878 8.42527 8.76475 8.93782 9.49417 11.03010 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.004568 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.157829 B = 6127.757845 C = 7052.275249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.575 3.425 4 O -0.531 6.531 5 C 0.059 3.941 6 C -0.097 4.097 7 C -0.084 4.084 8 C -0.091 4.091 9 C 0.100 3.900 10 C 0.558 3.442 11 O -0.527 6.527 12 N -0.562 5.562 13 C 0.214 3.786 14 C -0.528 4.528 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.896 5.896 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.266 1.266 22 C 0.101 3.899 23 C -0.156 4.156 24 C -0.194 4.194 25 C -0.177 4.177 26 N -0.419 5.419 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.413 0.587 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.034 0.966 35 H 0.037 0.963 36 H 0.265 0.735 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 14.919 -7.617 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.372 5.372 3 C 0.360 3.640 4 O -0.407 6.407 5 C -0.080 4.080 6 C -0.118 4.118 7 C -0.110 4.110 8 C -0.111 4.111 9 C -0.041 4.041 10 C 0.342 3.658 11 O -0.404 6.404 12 N -0.290 5.290 13 C 0.093 3.907 14 C -0.566 4.566 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.535 5.535 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.023 4.023 23 C -0.175 4.175 24 C -0.231 4.231 25 C -0.215 4.215 26 N -0.134 5.134 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.251 0.749 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.149 0.851 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.048 14.632 -7.537 19.823 hybrid contribution 1.089 -0.368 -0.671 1.332 sum -9.959 14.264 -8.208 19.236 Atomic orbital electron populations 1.21644 0.78888 1.02857 1.02559 1.46001 1.08143 1.09128 1.73927 1.17809 0.85651 0.84065 0.76493 1.90785 1.68845 1.31346 1.49683 1.21261 0.94362 0.90234 1.02153 1.22206 0.94819 0.99068 0.95735 1.21658 0.93862 0.98648 0.96824 1.22384 1.02856 0.91539 0.94369 1.21623 0.88812 0.95522 0.98110 1.17723 0.86381 0.82650 0.79003 1.90780 1.14308 1.85619 1.49665 1.47703 1.07748 1.07947 1.65597 1.19773 0.92947 0.79648 0.98287 1.21282 1.37513 1.03630 0.94197 0.90637 1.24837 0.95392 0.96875 0.95771 1.69898 1.44153 1.16684 1.22731 0.86869 0.80632 0.78846 0.83466 1.19895 1.21051 1.19044 1.22208 0.81507 1.05149 0.93433 1.22761 0.95032 1.01129 0.98574 1.23458 1.05045 0.91735 1.02847 1.22865 0.94693 1.01396 1.02527 1.67916 1.09359 1.26186 1.09978 0.91700 0.90147 0.91905 0.74880 0.83203 0.83281 0.82690 0.94799 0.94536 0.92542 0.90286 0.85109 0.88139 0.87676 0.89994 0.89065 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.71 59.85 0.64 1.32 16 2 N -0.72 -7.61 4.70 -67.92 -0.32 -7.93 16 3 C 0.57 7.25 6.68 -12.16 -0.08 7.17 16 4 O -0.53 -7.70 16.35 5.35 0.09 -7.61 16 5 C 0.06 0.74 5.98 -83.02 -0.50 0.25 16 6 C -0.10 -1.04 9.63 -38.95 -0.38 -1.41 16 7 C -0.08 -0.81 10.16 -39.34 -0.40 -1.21 16 8 C -0.09 -1.16 9.63 -38.95 -0.38 -1.53 16 9 C 0.10 1.58 6.66 -83.03 -0.55 1.03 16 10 C 0.56 11.34 7.65 -12.16 -0.09 11.24 16 11 O -0.53 -12.45 15.95 5.36 0.09 -12.36 16 12 N -0.56 -11.52 2.46 -176.03 -0.43 -11.95 16 13 C 0.21 5.13 4.22 -5.19 -0.02 5.10 16 14 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16 15 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 18 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 22 C 0.10 1.65 5.17 -4.04 -0.02 1.63 16 23 C -0.16 -2.19 5.95 -90.62 -0.54 -2.73 16 24 C -0.19 -2.37 8.93 -26.70 -0.24 -2.61 16 25 C -0.18 -1.97 9.91 -26.70 -0.26 -2.24 16 26 N -0.42 -5.88 3.40 -6.38 -0.02 -5.90 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.41 4.38 4.61 -40.82 -0.19 4.20 16 31 H 0.15 1.37 7.65 -52.48 -0.40 0.96 16 32 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.16 1.90 7.66 -52.49 -0.40 1.49 16 34 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 35 H 0.04 0.93 6.89 -51.93 -0.36 0.57 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 38 H 0.13 1.99 2.84 -80.57 -0.23 1.76 16 39 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.11 1.28 1.66 -51.93 -0.09 1.20 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.87 7.53 -51.93 -0.39 0.48 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -34.15 349.09 -7.89 -42.04 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.40 Total: 5.65 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -3.26 Total: 2.78 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.00 Total: -52.32 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.17 Total: -19.97 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.15 -7.89 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771623467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.031 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds