Wall clock time and date at job start Tue Mar 31 2020 11:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 120.00139 * 2 1 4 4 O 1.21516 * 119.99985 * 355.07119 * 3 2 1 5 5 C 1.48218 * 120.00297 * 175.07276 * 3 2 1 6 6 C 1.39630 * 119.65847 * 186.41887 * 5 3 2 7 7 C 1.38543 * 119.24896 * 179.76998 * 6 5 3 8 8 C 1.38587 * 118.55052 * 0.50108 * 7 6 5 9 9 C 1.39589 * 119.24804 * 359.74537 * 8 7 6 10 10 C 1.48225 * 119.65146 * 179.97438 * 9 8 7 11 11 O 1.21507 * 120.00282 * 7.61650 * 10 9 8 12 12 N 1.34774 * 119.99727 * 187.61530 * 10 9 8 13 13 C 1.46500 * 119.99942 * 176.90290 * 12 10 9 14 14 C 1.50701 * 109.47041 * 90.00442 * 13 12 10 15 15 H 1.08000 * 119.99612 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99879 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99623 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00308 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46944 * 90.00041 * 18 16 14 20 20 H 1.48497 * 109.47220 * 210.00102 * 18 16 14 21 21 H 1.48502 * 109.47133 * 330.00069 * 18 16 14 22 22 C 1.46499 * 120.00206 * 356.90636 * 12 10 9 23 23 C 1.53009 * 109.47109 * 92.97275 * 22 12 10 24 24 C 1.52999 * 117.49687 * 243.37592 * 23 22 12 25 25 C 1.52996 * 117.49821 * 174.71800 * 23 22 12 26 26 N 1.32347 * 119.65149 * 6.69859 * 5 3 2 27 27 H 1.08997 * 109.47131 * 59.99537 * 1 2 3 28 28 H 1.08996 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47172 * 300.00050 * 1 2 3 30 30 H 0.96995 * 119.99739 * 179.97438 * 2 1 3 31 31 H 1.08004 * 120.37284 * 359.97438 * 6 5 3 32 32 H 1.08003 * 120.72398 * 180.22535 * 7 6 5 33 33 H 1.07997 * 120.37759 * 179.76912 * 8 7 6 34 34 H 1.09002 * 109.47073 * 210.00142 * 13 12 10 35 35 H 1.09000 * 109.47361 * 330.00058 * 13 12 10 36 36 H 0.97007 * 119.99489 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47347 * 212.97118 * 22 12 10 38 38 H 1.08999 * 109.47237 * 332.97426 * 22 12 10 39 39 H 1.08999 * 115.54732 * 29.04674 * 23 22 12 40 40 H 1.09004 * 117.49860 * 0.02562 * 24 23 22 41 41 H 1.09001 * 117.49638 * 145.02396 * 24 23 22 42 42 H 1.08999 * 117.50126 * 214.97891 * 25 23 22 43 43 H 1.09003 * 117.49978 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5348 2.2176 -0.0904 5 6 3.6170 1.1696 0.1102 6 6 4.2978 2.3812 0.2450 7 6 5.6791 2.3732 0.3522 8 6 6.3397 1.1556 0.3110 9 6 5.5978 -0.0183 0.1690 10 6 6.2952 -1.3254 0.1233 11 8 7.4879 -1.3859 0.3470 12 7 5.6062 -2.4469 -0.1663 13 6 6.3068 -3.7287 -0.2784 14 6 6.3429 -4.4010 1.0699 15 1 5.8896 -3.9212 1.9247 16 6 6.9554 -5.6279 1.2122 17 7 6.9873 -6.2144 2.3890 18 14 7.7399 -6.4574 -0.2663 19 1 9.1607 -6.0386 -0.3726 20 1 7.6694 -7.9315 -0.1021 21 1 7.0135 -6.0613 -1.4994 22 6 4.1567 -2.3844 -0.3692 23 6 3.8576 -2.2003 -1.8585 24 6 3.1554 -0.9092 -2.2837 25 6 2.3914 -2.2356 -2.2942 26 7 4.2781 0.0236 0.0743 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.9500 -0.8400 0.0004 31 1 3.7535 3.3138 0.2687 32 1 6.2294 3.2962 0.4610 33 1 7.4161 1.1154 0.3881 34 1 5.7833 -4.3680 -0.9893 35 1 7.3255 -3.5568 -0.6261 36 1 7.4179 -7.0779 2.4890 37 1 3.7004 -3.3102 -0.0187 38 1 3.7475 -1.5431 0.1902 39 1 4.5959 -2.6202 -2.5416 40 1 2.9068 -0.1907 -1.5026 41 1 3.4314 -0.4799 -3.2468 42 1 2.1651 -2.6783 -3.2642 43 1 1.6398 -2.3904 -1.5200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771623467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:48 Heat of formation + Delta-G solvation = 13.095755 kcal Electronic energy + Delta-G solvation = -27559.686808 eV Core-core repulsion = 23799.794619 eV Total energy + Delta-G solvation = -3759.892189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34023 -40.73645 -39.65770 -38.53992 -36.29862 -35.71771 -34.69943 -33.79011 -32.87014 -30.35450 -28.26701 -27.87677 -26.00022 -25.22632 -24.02063 -23.15950 -22.05634 -21.63279 -21.11692 -19.18570 -19.05869 -18.52530 -17.47922 -17.25444 -17.10730 -16.93323 -16.39744 -16.23824 -15.96997 -15.76968 -15.36506 -14.94665 -14.84087 -14.65849 -14.59120 -14.30431 -13.81237 -13.74175 -13.36604 -13.20879 -13.08932 -13.00482 -12.65532 -12.44519 -12.31580 -12.10971 -11.78356 -11.59617 -11.31407 -11.16231 -11.05475 -10.93049 -10.82683 -10.44180 -10.13259 -10.05512 -9.42925 -8.33666 -6.38994 -0.62060 -0.23136 1.33182 1.36730 1.37734 1.45346 1.89457 1.98474 2.07474 2.31090 2.73765 2.78463 2.96456 3.00708 3.40461 3.76199 3.79043 3.89410 3.92479 4.05598 4.14071 4.21466 4.38360 4.47714 4.60545 4.66788 4.69204 4.74402 4.79418 4.83900 4.93137 4.97432 4.98114 5.00548 5.05263 5.23899 5.30354 5.31733 5.43615 5.49191 5.66263 6.10012 6.23180 6.42194 6.59266 6.61975 6.96448 7.13522 7.28351 8.83237 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.004568 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.157829 B = 6127.757845 C = 7052.275249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.714 5.714 3 C 0.574 3.426 4 O -0.551 6.551 5 C 0.048 3.952 6 C -0.085 4.085 7 C -0.060 4.060 8 C -0.091 4.091 9 C 0.074 3.926 10 C 0.550 3.450 11 O -0.575 6.575 12 N -0.571 5.571 13 C 0.224 3.776 14 C -0.534 4.534 15 H 0.028 0.972 16 C 0.015 3.985 17 N -0.944 5.944 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.274 1.274 21 H -0.240 1.240 22 C 0.101 3.899 23 C -0.175 4.175 24 C -0.186 4.186 25 C -0.154 4.154 26 N -0.423 5.423 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.412 0.588 31 H 0.173 0.827 32 H 0.196 0.804 33 H 0.156 0.844 34 H 0.050 0.950 35 H 0.023 0.977 36 H 0.269 0.731 37 H 0.065 0.935 38 H 0.146 0.854 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.239 16.623 -9.563 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.366 5.366 3 C 0.359 3.641 4 O -0.429 6.429 5 C -0.092 4.092 6 C -0.105 4.105 7 C -0.085 4.085 8 C -0.112 4.112 9 C -0.066 4.066 10 C 0.337 3.663 11 O -0.455 6.455 12 N -0.299 5.299 13 C 0.102 3.898 14 C -0.573 4.573 15 H 0.047 0.953 16 C -0.184 4.184 17 N -0.583 5.583 18 Si 0.769 3.231 19 H -0.199 1.199 20 H -0.200 1.200 21 H -0.163 1.163 22 C -0.021 4.021 23 C -0.195 4.195 24 C -0.223 4.223 25 C -0.191 4.191 26 N -0.138 5.138 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.250 0.750 31 H 0.191 0.809 32 H 0.213 0.787 33 H 0.174 0.826 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.162 0.838 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.531 16.338 -9.498 22.675 hybrid contribution 1.439 -0.779 0.037 1.637 sum -11.092 15.559 -9.461 21.322 Atomic orbital electron populations 1.21873 0.77237 1.04743 1.02655 1.46088 1.09283 1.08502 1.72714 1.17823 0.85564 0.84297 0.76450 1.90775 1.69094 1.31982 1.51085 1.21473 0.94591 0.90537 1.02624 1.22570 0.95303 0.99135 0.93523 1.22088 0.93489 0.98877 0.94084 1.22509 1.02991 0.91718 0.94001 1.20980 0.89663 0.93956 1.01996 1.18419 0.86164 0.84161 0.77572 1.90726 1.16345 1.86715 1.51695 1.47782 1.09355 1.06980 1.65742 1.19423 0.93009 0.81450 0.95925 1.21471 1.37071 1.03948 0.94809 0.95324 1.25804 0.95837 0.97574 0.99147 1.70050 1.45488 1.17436 1.25374 0.85737 0.79395 0.77846 0.80129 1.19925 1.19953 1.16342 1.22399 0.79021 1.05044 0.95647 1.22510 0.96949 1.03627 0.96397 1.23457 1.04406 0.91608 1.02859 1.23014 0.92758 0.99811 1.03548 1.67585 1.08611 1.27353 1.10239 0.91458 0.87469 0.91929 0.74974 0.80908 0.78683 0.82633 0.93222 0.95926 0.92221 0.91646 0.83829 0.89641 0.87547 0.89654 0.87533 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.71 127.77 1.37 2.43 16 2 N -0.71 -13.71 4.70 -487.09 -2.29 -16.00 16 3 C 0.57 13.32 6.68 86.90 0.58 13.90 16 4 O -0.55 -14.77 16.35 -3.77 -0.06 -14.83 16 5 C 0.05 1.11 5.98 42.06 0.25 1.36 16 6 C -0.08 -1.53 9.63 22.68 0.22 -1.31 16 7 C -0.06 -0.95 10.16 22.43 0.23 -0.72 16 8 C -0.09 -2.22 9.63 22.68 0.22 -2.00 16 9 C 0.07 2.34 6.66 42.05 0.28 2.62 16 10 C 0.55 23.33 7.65 86.90 0.67 23.99 16 11 O -0.57 -28.61 15.95 -3.74 -0.06 -28.67 16 12 N -0.57 -24.37 2.46 -829.12 -2.04 -26.41 16 13 C 0.22 11.08 4.22 85.63 0.36 11.44 16 14 C -0.53 -31.67 9.94 25.60 0.25 -31.42 16 15 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 16 C 0.01 0.86 5.47 84.65 0.46 1.33 16 17 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 18 Si 0.95 44.34 27.47 68.60 1.88 46.22 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 22 C 0.10 3.38 5.17 86.38 0.45 3.83 16 23 C -0.18 -4.82 5.95 -10.79 -0.06 -4.88 16 24 C -0.19 -4.22 8.93 30.62 0.27 -3.95 16 25 C -0.15 -3.05 9.91 30.62 0.30 -2.75 16 26 N -0.42 -11.57 3.40 -174.09 -0.59 -12.16 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.41 8.05 4.61 -92.71 -0.43 7.62 16 31 H 0.17 2.41 7.65 -2.91 -0.02 2.39 16 32 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.16 3.74 7.66 -2.91 -0.02 3.72 16 34 H 0.05 2.28 7.13 -2.39 -0.02 2.27 16 35 H 0.02 1.18 6.89 -2.39 -0.02 1.17 16 36 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 37 H 0.07 2.29 8.09 -2.39 -0.02 2.27 16 38 H 0.15 4.40 2.84 -58.93 -0.17 4.24 16 39 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.11 2.40 1.66 -2.39 0.00 2.40 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.11 1.75 7.53 -2.39 -0.02 1.73 16 Total: -1.00 -79.05 349.09 3.41 -75.64 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.42 Total: 21.62 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 5.85 Total: 13.87 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -4.62 Total: -113.85 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.12 Total: -43.50 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -79.05 3.41 -75.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771623467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.735 kcal (2) G-P(sol) polarization free energy of solvation -79.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds