Wall clock time and date at job start Tue Mar 31 2020 11:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42899 * 113.99774 * 2 1 4 4 C 1.52999 * 109.47307 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46664 * 65.47522 * 4 3 2 6 6 C 1.46503 * 120.00263 * 265.24015 * 5 4 3 7 7 C 1.50698 * 109.46949 * 270.00167 * 6 5 4 8 8 H 1.07999 * 120.00221 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99576 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00186 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99690 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46905 * 90.00373 * 11 9 7 13 13 H 1.48499 * 109.46652 * 209.99979 * 11 9 7 14 14 H 1.48491 * 109.47287 * 329.99955 * 11 9 7 15 15 C 1.34784 * 119.99715 * 85.24242 * 5 4 3 16 16 O 1.21734 * 119.99567 * 185.04505 * 15 5 4 17 17 C 1.46424 * 120.00205 * 5.05174 * 15 5 4 18 18 C 1.40108 * 126.85013 * 260.10231 * 17 15 5 19 19 C 1.40055 * 136.37875 * 359.97438 * 18 17 15 20 20 C 1.36074 * 119.47506 * 179.97438 * 19 18 17 21 21 C 1.39485 * 121.56901 * 0.04076 * 20 19 18 22 22 C 1.35819 * 121.83704 * 359.97438 * 21 20 19 23 23 C 1.40930 * 119.54704 * 0.02562 * 22 21 20 24 24 N 1.32141 * 135.41599 * 180.02562 * 23 22 21 25 25 N 1.28444 * 111.38857 * 179.97438 * 24 23 22 26 26 C 1.46507 * 124.15717 * 180.02562 * 25 24 23 27 27 H 1.08993 * 109.47090 * 300.00421 * 1 2 3 28 28 H 1.08999 * 109.46557 * 60.00532 * 1 2 3 29 29 H 1.09001 * 109.46629 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46969 * 59.99508 * 3 2 1 31 31 H 1.09006 * 109.47178 * 299.99943 * 3 2 1 32 32 H 1.08999 * 109.47293 * 305.48258 * 4 3 2 33 33 H 1.08996 * 109.47580 * 185.47511 * 4 3 2 34 34 H 1.09003 * 109.46775 * 30.00084 * 6 5 4 35 35 H 1.08998 * 109.46987 * 150.00268 * 6 5 4 36 36 H 0.96998 * 119.99744 * 180.02562 * 10 9 7 37 37 H 1.08005 * 120.26307 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.21882 * 180.02562 * 20 19 18 39 39 H 1.07993 * 119.07977 * 180.25610 * 21 20 19 40 40 H 1.07999 * 120.22914 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.47120 * 274.91638 * 26 25 24 42 42 H 1.08997 * 109.46702 * 34.92491 * 26 25 24 43 43 H 1.09001 * 109.47208 * 154.91742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9775 0.5745 -1.2557 6 6 4.2076 -0.8706 -1.3270 7 6 5.6411 -1.1691 -0.9706 8 1 6.3133 -0.3631 -0.7159 9 6 6.0940 -2.4714 -0.9685 10 7 5.2753 -3.4530 -1.2781 11 14 7.8707 -2.8415 -0.5259 12 1 7.9802 -3.0632 0.9383 13 1 8.3163 -4.0615 -1.2459 14 1 8.7280 -1.6943 -0.9184 15 6 4.1724 1.3425 -2.3460 16 8 4.4502 0.8258 -3.4127 17 6 4.0502 2.7983 -2.2474 18 6 2.9469 3.5762 -2.6224 19 6 1.6792 3.3408 -3.1693 20 6 0.8460 4.3905 -3.4044 21 6 1.2234 5.7017 -3.1145 22 6 2.4382 5.9967 -2.5836 23 6 3.3505 4.9566 -2.3150 24 7 4.5729 4.8817 -1.8187 25 7 4.9863 3.6665 -1.7732 26 6 6.3025 3.2636 -1.2714 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8503 0.5616 0.8377 33 1 3.9784 2.1758 0.0987 34 1 3.5454 -1.3790 -0.6261 35 1 4.0042 -1.2214 -2.3388 36 1 5.5939 -4.3691 -1.2762 37 1 1.3652 2.3339 -3.4017 38 1 -0.1308 4.2042 -3.8258 39 1 0.5286 6.5041 -3.3135 40 1 2.7034 7.0214 -2.3688 41 1 7.0372 3.3450 -2.0724 42 1 6.5912 3.9141 -0.4458 43 1 6.2581 2.2318 -0.9226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771658160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:00 Heat of formation + Delta-G solvation = 27.588225 kcal Electronic energy + Delta-G solvation = -27495.578984 eV Core-core repulsion = 23736.315236 eV Total energy + Delta-G solvation = -3759.263748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 6.97 seconds Orbital eigenvalues (eV) -42.38384 -39.02595 -37.67268 -37.47903 -35.00280 -32.90883 -32.59450 -31.81320 -29.71769 -29.50691 -27.59813 -27.01811 -25.98216 -23.92462 -22.91583 -22.77249 -22.20048 -20.92403 -18.69492 -17.54293 -17.25549 -16.62563 -16.55342 -16.07070 -15.98048 -15.62324 -15.23140 -14.84925 -14.54985 -14.20535 -14.08722 -13.92536 -13.66374 -13.22175 -12.98684 -12.86818 -12.38657 -12.15989 -11.97964 -11.77524 -11.71400 -11.63983 -11.63401 -11.33889 -10.97599 -10.93465 -10.53603 -10.25934 -10.22215 -10.07141 -9.73089 -9.45340 -9.35394 -8.58945 -8.47152 -7.84570 -7.61907 -6.08457 -4.14514 0.65157 1.73394 2.23621 2.47079 3.12939 3.25736 3.32924 3.34520 3.67240 3.88699 3.99662 4.18744 4.37952 4.58931 4.95587 4.99752 5.06919 5.09691 5.22378 5.26456 5.30518 5.38893 5.40983 5.43402 5.46914 5.54341 5.56665 5.59058 5.62446 5.74702 5.83454 6.08073 6.10480 6.44802 6.48823 6.61543 6.70238 6.97059 7.05712 7.32708 7.40246 7.47281 7.86755 8.02742 8.16148 8.20584 8.68088 8.90343 9.49895 10.99533 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.004776 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.156610 B = 5861.720670 C = 7001.540218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.044 3.956 4 C 0.114 3.886 5 N -0.572 5.572 6 C 0.249 3.751 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.065 3.935 10 N -0.888 5.888 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.576 3.424 16 O -0.516 6.516 17 C 0.007 3.993 18 C -0.138 4.138 19 C -0.052 4.052 20 C -0.141 4.141 21 C -0.099 4.099 22 C -0.082 4.082 23 C 0.060 3.940 24 N -0.300 5.300 25 N -0.221 5.221 26 C 0.072 3.928 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 15.625 2.766 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.034 4.034 4 C -0.011 4.011 5 N -0.303 5.303 6 C 0.130 3.870 7 C -0.572 4.572 8 H 0.073 0.927 9 C -0.138 4.138 10 N -0.527 5.527 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.200 1.200 15 C 0.358 3.642 16 O -0.390 6.390 17 C -0.131 4.131 18 C -0.147 4.147 19 C -0.073 4.073 20 C -0.160 4.160 21 C -0.122 4.122 22 C -0.103 4.103 23 C -0.086 4.086 24 N -0.136 5.136 25 N -0.003 5.003 26 C -0.068 4.068 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.794 15.554 2.684 17.184 hybrid contribution 0.237 -0.470 0.003 0.526 sum -6.557 15.084 2.687 16.666 Atomic orbital electron populations 1.22704 0.81834 1.02584 0.99298 1.88059 1.18918 1.26859 1.95212 1.23073 0.94729 0.85424 1.00148 1.21505 0.91867 0.98619 0.89096 1.48233 1.63124 1.10991 1.07971 1.19446 0.96455 0.71549 0.99519 1.21374 0.95727 0.92524 1.47563 0.92686 1.24905 0.97757 0.96043 0.95103 1.69938 1.35172 0.99730 1.47822 0.86527 0.84709 0.77992 0.78344 1.20597 1.21044 1.19967 1.16790 0.79327 0.82927 0.85165 1.90867 1.47462 1.73134 1.27583 1.21622 0.91650 0.93001 1.06789 1.19327 0.95397 0.92535 1.07444 1.20107 0.91045 0.99423 0.96696 1.20576 0.99954 0.92324 1.03152 1.20552 0.95907 0.96675 0.99017 1.19813 0.92330 0.96629 1.01554 1.20575 0.91737 0.94034 1.02210 1.73388 1.13912 1.01110 1.25148 1.45761 1.13264 1.02677 1.38621 1.22508 0.79062 1.03515 1.01698 0.94626 0.94456 0.89703 0.93049 0.93119 0.88284 0.91064 0.93323 0.93726 0.92619 0.85998 0.86018 0.85807 0.85623 0.88666 0.87833 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.35 10.08 -35.23 -0.36 -6.70 16 3 C 0.04 0.67 6.25 37.16 0.23 0.90 16 4 C 0.11 1.89 5.60 -4.04 -0.02 1.87 16 5 N -0.57 -11.92 2.42 -176.69 -0.43 -12.35 16 6 C 0.25 6.35 5.09 -5.19 -0.03 6.32 16 7 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 8 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 11 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 C 0.58 12.23 6.67 -12.96 -0.09 12.15 16 16 O -0.52 -13.18 16.66 5.16 0.09 -13.10 16 17 C 0.01 0.12 4.88 -81.94 -0.40 -0.28 16 18 C -0.14 -2.31 5.88 -104.93 -0.62 -2.93 16 19 C -0.05 -0.77 9.39 -39.68 -0.37 -1.14 16 20 C -0.14 -1.65 9.92 -39.89 -0.40 -2.05 16 21 C -0.10 -1.07 9.89 -39.98 -0.40 -1.47 16 22 C -0.08 -1.03 10.08 -39.43 -0.40 -1.42 16 23 C 0.06 0.93 7.53 -83.13 -0.63 0.31 16 24 N -0.30 -4.79 11.88 33.21 0.39 -4.39 16 25 N -0.22 -3.52 3.47 -63.75 -0.22 -3.74 16 26 C 0.07 0.91 11.12 59.85 0.67 1.57 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.78 6.82 -51.93 -0.35 0.43 16 32 H 0.10 1.67 8.04 -51.93 -0.42 1.26 16 33 H 0.07 1.05 6.79 -51.93 -0.35 0.70 16 34 H 0.05 1.30 7.58 -51.93 -0.39 0.90 16 35 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.11 1.50 7.55 -51.93 -0.39 1.11 16 LS Contribution 368.13 15.07 5.55 5.55 Total: -1.00 -33.92 368.13 -7.07 -40.99 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.06 Total: 0.48 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.75 Total: 2.36 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.48 Total: -45.56 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.27 Total: -19.80 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.92 -7.07 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771658160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.579 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.97 seconds