Wall clock time and date at job start Tue Mar 31 2020 11:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42899 * 113.99774 * 2 1 4 4 C 1.52999 * 109.47307 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46664 * 65.47522 * 4 3 2 6 6 C 1.46503 * 120.00263 * 265.24015 * 5 4 3 7 7 C 1.50698 * 109.46949 * 270.00167 * 6 5 4 8 8 H 1.07999 * 120.00221 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99576 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00186 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99690 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46905 * 90.00373 * 11 9 7 13 13 H 1.48499 * 109.46652 * 209.99979 * 11 9 7 14 14 H 1.48491 * 109.47287 * 329.99955 * 11 9 7 15 15 C 1.34784 * 119.99715 * 85.24242 * 5 4 3 16 16 O 1.21734 * 119.99567 * 185.04505 * 15 5 4 17 17 C 1.46424 * 120.00205 * 5.05174 * 15 5 4 18 18 C 1.40108 * 126.85013 * 260.10231 * 17 15 5 19 19 C 1.40055 * 136.37875 * 359.97438 * 18 17 15 20 20 C 1.36074 * 119.47506 * 179.97438 * 19 18 17 21 21 C 1.39485 * 121.56901 * 0.04076 * 20 19 18 22 22 C 1.35819 * 121.83704 * 359.97438 * 21 20 19 23 23 C 1.40930 * 119.54704 * 0.02562 * 22 21 20 24 24 N 1.32141 * 135.41599 * 180.02562 * 23 22 21 25 25 N 1.28444 * 111.38857 * 179.97438 * 24 23 22 26 26 C 1.46507 * 124.15717 * 180.02562 * 25 24 23 27 27 H 1.08993 * 109.47090 * 300.00421 * 1 2 3 28 28 H 1.08999 * 109.46557 * 60.00532 * 1 2 3 29 29 H 1.09001 * 109.46629 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46969 * 59.99508 * 3 2 1 31 31 H 1.09006 * 109.47178 * 299.99943 * 3 2 1 32 32 H 1.08999 * 109.47293 * 305.48258 * 4 3 2 33 33 H 1.08996 * 109.47580 * 185.47511 * 4 3 2 34 34 H 1.09003 * 109.46775 * 30.00084 * 6 5 4 35 35 H 1.08998 * 109.46987 * 150.00268 * 6 5 4 36 36 H 0.96998 * 119.99744 * 180.02562 * 10 9 7 37 37 H 1.08005 * 120.26307 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.21882 * 180.02562 * 20 19 18 39 39 H 1.07993 * 119.07977 * 180.25610 * 21 20 19 40 40 H 1.07999 * 120.22914 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.47120 * 274.91638 * 26 25 24 42 42 H 1.08997 * 109.46702 * 34.92491 * 26 25 24 43 43 H 1.09001 * 109.47208 * 154.91742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9775 0.5745 -1.2557 6 6 4.2076 -0.8706 -1.3270 7 6 5.6411 -1.1691 -0.9706 8 1 6.3133 -0.3631 -0.7159 9 6 6.0940 -2.4714 -0.9685 10 7 5.2753 -3.4530 -1.2781 11 14 7.8707 -2.8415 -0.5259 12 1 7.9802 -3.0632 0.9383 13 1 8.3163 -4.0615 -1.2459 14 1 8.7280 -1.6943 -0.9184 15 6 4.1724 1.3425 -2.3460 16 8 4.4502 0.8258 -3.4127 17 6 4.0502 2.7983 -2.2474 18 6 2.9469 3.5762 -2.6224 19 6 1.6792 3.3408 -3.1693 20 6 0.8460 4.3905 -3.4044 21 6 1.2234 5.7017 -3.1145 22 6 2.4382 5.9967 -2.5836 23 6 3.3505 4.9566 -2.3150 24 7 4.5729 4.8817 -1.8187 25 7 4.9863 3.6665 -1.7732 26 6 6.3025 3.2636 -1.2714 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8503 0.5616 0.8377 33 1 3.9784 2.1758 0.0987 34 1 3.5454 -1.3790 -0.6261 35 1 4.0042 -1.2214 -2.3388 36 1 5.5939 -4.3691 -1.2762 37 1 1.3652 2.3339 -3.4017 38 1 -0.1308 4.2042 -3.8258 39 1 0.5286 6.5041 -3.3135 40 1 2.7034 7.0214 -2.3688 41 1 7.0372 3.3450 -2.0724 42 1 6.5912 3.9141 -0.4458 43 1 6.2581 2.2318 -0.9226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771658160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:54 Heat of formation + Delta-G solvation = 5.185387 kcal Electronic energy + Delta-G solvation = -27496.550444 eV Core-core repulsion = 23736.315236 eV Total energy + Delta-G solvation = -3760.235208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 4.81 seconds Orbital eigenvalues (eV) -43.57699 -40.66233 -38.85113 -38.64417 -36.71332 -34.85841 -33.78207 -32.96793 -31.24937 -30.69664 -29.07052 -28.37560 -27.15381 -25.64580 -24.27493 -24.08467 -23.29214 -22.37218 -20.05329 -18.91195 -18.56560 -18.40966 -18.00892 -17.25237 -17.16563 -16.98663 -16.75287 -16.37808 -15.98231 -15.62939 -15.37498 -15.09860 -14.91763 -14.45031 -14.24932 -14.13906 -13.90284 -13.70988 -13.46683 -13.14678 -12.95244 -12.82724 -12.77035 -12.68392 -12.63780 -12.57448 -12.21704 -12.03987 -11.73349 -11.36542 -11.30852 -11.06971 -10.64490 -10.59326 -9.66391 -9.63328 -8.74218 -8.20815 -6.36201 -0.46583 0.66404 0.95297 1.31419 1.39131 1.41795 1.51445 1.63052 2.10964 2.41123 2.84076 2.86112 3.08239 3.09638 3.23206 3.85731 3.96503 4.04724 4.09878 4.13202 4.17454 4.23016 4.26083 4.37245 4.41165 4.45145 4.50910 4.54922 4.59302 4.75906 4.83668 4.84306 5.01742 5.11415 5.23893 5.37449 5.46689 5.51876 5.58322 5.63341 5.77220 6.01771 6.03443 6.22760 6.49202 6.70900 6.83412 7.04334 7.34576 8.87312 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.004776 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.156610 B = 5861.720670 C = 7001.540218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.049 3.951 4 C 0.112 3.888 5 N -0.571 5.571 6 C 0.270 3.730 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.969 3.031 12 H -0.265 1.265 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.583 3.417 16 O -0.575 6.575 17 C -0.030 4.030 18 C -0.142 4.142 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.091 4.091 22 C -0.084 4.084 23 C 0.042 3.958 24 N -0.295 5.295 25 N -0.217 5.217 26 C 0.065 3.935 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.031 0.969 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.107 0.893 38 H 0.154 0.846 39 H 0.169 0.831 40 H 0.154 0.846 41 H 0.103 0.897 42 H 0.138 0.862 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 18.989 3.915 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.028 4.028 4 C -0.011 4.011 5 N -0.300 5.300 6 C 0.150 3.850 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.793 3.207 12 H -0.190 1.190 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.368 3.632 16 O -0.454 6.454 17 C -0.166 4.166 18 C -0.150 4.150 19 C -0.115 4.115 20 C -0.131 4.131 21 C -0.113 4.113 22 C -0.104 4.104 23 C -0.102 4.102 24 N -0.132 5.132 25 N -0.001 5.001 26 C -0.074 4.074 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.049 0.951 35 H 0.014 0.986 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.171 0.829 39 H 0.186 0.814 40 H 0.171 0.829 41 H 0.122 0.878 42 H 0.156 0.844 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.425 18.954 3.877 20.722 hybrid contribution 0.254 -1.389 -0.395 1.466 sum -7.172 17.565 3.482 19.289 Atomic orbital electron populations 1.22890 0.79723 1.03383 1.00849 1.88007 1.21431 1.28119 1.95514 1.23045 0.93203 0.85072 1.01475 1.21732 0.93511 0.99136 0.86698 1.48102 1.62898 1.09320 1.09710 1.18829 0.95865 0.74409 0.95923 1.21688 0.96325 0.93034 1.47312 0.91940 1.25862 1.02479 0.95804 0.94797 1.70082 1.37470 1.00197 1.48884 0.85402 0.78893 0.77751 0.78695 1.18952 1.21061 1.19035 1.17107 0.77611 0.84455 0.84021 1.90811 1.50110 1.74797 1.29690 1.20946 0.93700 0.91072 1.10909 1.19592 0.95616 0.93033 1.06802 1.20189 0.91556 1.00013 0.99730 1.21047 1.00250 0.92004 0.99784 1.21052 0.95941 0.97207 0.97106 1.20283 0.92118 0.97133 1.00867 1.21085 0.92020 0.94328 1.02792 1.73341 1.14226 1.00768 1.24827 1.45928 1.13581 1.02264 1.38341 1.22731 0.78137 1.03351 1.03134 0.92029 0.93799 0.89436 0.89650 0.93535 0.88760 0.88873 0.95065 0.98608 0.92453 0.87473 0.82863 0.81364 0.82881 0.87831 0.84404 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -14.36 10.08 -148.98 -1.50 -15.86 16 3 C 0.05 1.49 6.25 71.98 0.45 1.94 16 4 C 0.11 3.82 5.60 86.38 0.48 4.31 16 5 N -0.57 -25.22 2.42 -831.12 -2.01 -27.23 16 6 C 0.27 14.79 5.09 85.63 0.44 15.23 16 7 C -0.55 -30.60 9.39 25.60 0.24 -30.36 16 8 H 0.06 3.33 7.81 -2.91 -0.02 3.30 16 9 C 0.01 0.56 5.46 84.66 0.46 1.02 16 10 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 11 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 C 0.58 26.39 6.67 86.37 0.58 26.97 16 16 O -0.58 -31.81 16.66 -4.46 -0.07 -31.89 16 17 C -0.03 -1.11 4.88 41.05 0.20 -0.91 16 18 C -0.14 -4.71 5.88 -20.07 -0.12 -4.83 16 19 C -0.09 -2.73 9.39 22.21 0.21 -2.52 16 20 C -0.11 -2.26 9.92 22.07 0.22 -2.04 16 21 C -0.09 -1.53 9.89 22.01 0.22 -1.32 16 22 C -0.08 -1.75 10.08 22.37 0.23 -1.53 16 23 C 0.04 1.24 7.53 42.07 0.32 1.55 16 24 N -0.29 -8.96 11.88 -48.85 -0.58 -9.54 16 25 N -0.22 -6.85 3.47 -355.62 -1.23 -8.09 16 26 C 0.07 1.62 11.12 127.77 1.42 3.04 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 1.98 8.14 -2.38 -0.02 1.97 16 31 H 0.05 1.45 6.82 -2.38 -0.02 1.43 16 32 H 0.09 3.27 8.04 -2.39 -0.02 3.25 16 33 H 0.09 2.75 6.79 -2.39 -0.02 2.73 16 34 H 0.03 1.80 7.58 -2.39 -0.02 1.78 16 35 H 0.00 -0.27 7.36 -2.39 -0.02 -0.29 16 36 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.11 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 41 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.09 2.58 7.55 -2.39 -0.02 2.56 16 Total: -1.00 -78.96 368.13 4.51 -74.45 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.01 Total: 15.69 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 6.59 Total: 12.49 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -3.54 Total: -100.60 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -1.58 Total: -47.75 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -78.96 4.51 -74.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771658160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.631 kcal (2) G-P(sol) polarization free energy of solvation -78.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.81 seconds