Wall clock time and date at job start Tue Mar 31 2020 11:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00146 * 2 1 4 4 C 1.52993 * 109.47251 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47269 * 65.00320 * 4 3 2 6 6 C 1.46505 * 119.99833 * 270.00055 * 5 4 3 7 7 C 1.50701 * 109.46750 * 269.99758 * 6 5 4 8 8 H 1.07998 * 120.00273 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99532 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00119 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99971 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46914 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47305 * 119.99781 * 11 9 7 14 14 H 1.48504 * 109.47146 * 239.99698 * 11 9 7 15 15 C 1.34775 * 120.00080 * 89.99682 * 5 4 3 16 16 O 1.21283 * 120.00134 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99953 * 0.02562 * 15 5 4 18 18 C 1.50703 * 109.47166 * 179.97438 * 17 15 5 19 19 C 1.34456 * 126.51505 * 265.02463 * 18 17 15 20 20 N 1.36665 * 109.96658 * 180.02562 * 19 18 17 21 21 H 0.97006 * 125.05502 * 179.97438 * 20 19 18 22 22 C 1.37550 * 109.90209 * 0.02562 * 20 19 18 23 23 C 1.38865 * 134.46960 * 180.02562 * 22 20 19 24 24 N 1.31740 * 120.27015 * 179.97438 * 23 22 20 25 25 C 1.32291 * 122.57657 * 0.02797 * 24 23 22 26 26 C 1.36645 * 121.32244 * 0.02562 * 25 24 23 27 27 C 1.39843 * 118.69310 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47027 * 299.99577 * 1 2 3 29 29 H 1.08994 * 109.47155 * 59.99501 * 1 2 3 30 30 H 1.09003 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46900 * 60.00212 * 3 2 1 32 32 H 1.09003 * 109.47130 * 300.00895 * 3 2 1 33 33 H 1.08997 * 109.47466 * 304.99923 * 4 3 2 34 34 H 1.09005 * 109.47100 * 185.00347 * 4 3 2 35 35 H 1.08998 * 109.46715 * 30.00065 * 6 5 4 36 36 H 1.08995 * 109.46788 * 149.99731 * 6 5 4 37 37 H 0.96999 * 120.00200 * 179.97438 * 10 9 7 38 38 H 1.09007 * 109.47043 * 59.99994 * 17 15 5 39 39 H 1.08999 * 109.47156 * 299.99800 * 17 15 5 40 40 H 1.08000 * 125.01897 * 0.04469 * 19 18 17 41 41 H 1.07996 * 119.86209 * 359.97438 * 23 22 20 42 42 H 1.08001 * 119.34381 * 179.97438 * 25 24 23 43 43 H 1.07992 * 120.65566 * 179.70593 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1052 -0.8920 -1.3428 7 6 5.5010 -1.2977 -0.9450 8 1 6.2195 -0.5459 -0.6538 9 6 5.8606 -2.6287 -0.9529 10 7 4.9854 -3.5442 -1.3070 11 14 7.5905 -3.1318 -0.4591 12 1 8.3760 -1.9220 -0.1060 13 1 7.5261 -4.0404 0.7137 14 1 8.2449 -3.8328 -1.5930 15 6 4.2614 1.3339 -2.3218 16 8 4.6254 0.8204 -3.3585 17 6 4.1287 2.8322 -2.2290 18 6 4.5052 3.4526 -3.5497 19 6 5.7119 3.9378 -3.8907 20 7 5.6763 4.4216 -5.1684 21 1 6.4275 4.8219 -5.6337 22 6 4.4168 4.2577 -5.6962 23 6 3.8272 4.5572 -6.9173 24 7 2.5596 4.2690 -7.1312 25 6 1.7961 3.6930 -6.2172 26 6 2.2883 3.3624 -4.9861 27 6 3.6281 3.6441 -4.7010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.8515 0.5683 0.8409 34 1 3.9785 2.1766 0.0890 35 1 3.3852 -1.3628 -0.6735 36 1 3.9119 -1.2113 -2.3669 37 1 5.2385 -4.4806 -1.3129 38 1 4.7913 3.2080 -1.4493 39 1 3.0981 3.0912 -1.9860 40 1 6.5811 3.9440 -3.2497 41 1 4.4103 5.0282 -7.6948 42 1 0.7627 3.4805 -6.4484 43 1 1.6541 2.8968 -4.2464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771720588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:16 Heat of formation + Delta-G solvation = -6.789869 kcal Electronic energy + Delta-G solvation = -26546.919704 eV Core-core repulsion = 22786.165210 eV Total energy + Delta-G solvation = -3760.754494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52883 -39.04076 -37.97319 -37.41826 -34.75337 -33.17922 -32.54411 -30.91707 -29.87178 -29.53046 -27.93073 -26.34943 -25.83311 -23.59261 -22.73519 -22.60311 -22.41572 -19.82882 -18.49383 -17.89967 -16.81637 -16.69803 -16.37422 -15.96957 -15.70070 -15.47827 -15.04568 -14.80189 -14.65757 -14.58959 -14.22835 -14.07488 -13.85474 -12.97583 -12.79816 -12.63752 -12.52953 -12.19354 -11.92913 -11.82902 -11.65225 -11.58510 -11.32700 -11.15186 -10.86899 -10.77678 -10.36779 -10.08197 -9.93461 -9.54685 -9.51356 -9.41395 -8.84113 -8.54241 -8.33388 -7.74954 -7.54320 -5.94178 -3.98121 1.02514 1.55599 2.65164 3.03450 3.33741 3.40577 3.43576 3.52006 3.95649 4.05056 4.14300 4.51841 4.52784 4.69681 4.76984 4.92826 5.13792 5.16140 5.27318 5.33937 5.39616 5.45551 5.49609 5.51867 5.58155 5.59540 5.62694 5.67299 5.69938 5.80547 5.88161 5.99191 6.25789 6.29175 6.55279 6.64676 6.97661 7.32036 7.41528 7.43019 7.63456 7.68793 8.04292 8.10036 8.36500 8.56164 9.01597 9.21942 9.65788 11.13853 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.004155 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.899258 B = 6737.854397 C = 8138.946788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.592 5.592 6 C 0.250 3.750 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.502 3.498 16 O -0.531 6.531 17 C -0.070 4.070 18 C -0.143 4.143 19 C 0.075 3.925 20 N -0.583 5.583 21 H 0.418 0.582 22 C 0.038 3.962 23 C 0.107 3.893 24 N -0.472 5.472 25 C 0.048 3.952 26 C -0.113 4.113 27 C -0.056 4.056 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.174 0.826 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.019 18.808 -0.709 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.035 4.035 4 C -0.013 4.013 5 N -0.324 5.324 6 C 0.131 3.869 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.288 3.712 16 O -0.407 6.407 17 C -0.111 4.111 18 C -0.150 4.150 19 C -0.054 4.054 20 N -0.186 5.186 21 H 0.255 0.745 22 C -0.072 4.072 23 C -0.061 4.061 24 N -0.181 5.181 25 C -0.102 4.102 26 C -0.133 4.133 27 C -0.067 4.067 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.191 0.809 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.079 18.351 -2.112 19.158 hybrid contribution 1.472 -0.295 1.030 1.821 sum -3.607 18.056 -1.082 18.445 Atomic orbital electron populations 1.22698 0.82073 1.02600 0.99089 1.88111 1.18690 1.26930 1.95122 1.23127 0.95457 0.85453 0.99446 1.21506 0.91127 0.98961 0.89752 1.48180 1.64611 1.09808 1.09763 1.19277 0.96582 0.72273 0.98752 1.21511 0.97530 0.92151 1.45027 0.92667 1.24916 0.97234 0.96483 0.95486 1.69954 1.34173 1.00891 1.48235 0.86509 0.84771 0.78429 0.78048 1.19932 1.21043 1.21052 1.20294 0.78657 0.88092 0.84145 1.90685 1.45986 1.74779 1.29267 1.20110 1.03029 0.93732 0.94187 1.19590 0.92889 1.06969 0.95547 1.21708 0.98796 0.99265 0.85615 1.41536 1.09962 1.54093 1.13013 0.74533 1.19343 0.86406 1.04411 0.96994 1.21713 0.91385 1.00181 0.92811 1.67513 1.04715 1.12374 1.33503 1.21976 0.99722 0.98677 0.89791 1.21230 0.94016 0.99718 0.98333 1.19213 0.93756 0.99893 0.93869 0.94699 0.94597 0.89794 0.93124 0.93765 0.89050 0.90088 0.93742 0.94432 0.92949 0.88697 0.89148 0.80867 0.83254 0.83079 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.29 9.53 -35.23 -0.34 -6.63 16 3 C 0.04 0.59 6.28 37.15 0.23 0.82 16 4 C 0.11 1.73 5.62 -4.05 -0.02 1.71 16 5 N -0.59 -12.38 2.42 -175.06 -0.42 -12.81 16 6 C 0.25 6.70 4.98 -5.19 -0.03 6.67 16 7 C -0.52 -15.02 9.39 -34.44 -0.32 -15.35 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 11 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 15 C 0.50 10.26 7.67 -10.98 -0.08 10.18 16 16 O -0.53 -13.58 15.61 5.56 0.09 -13.49 16 17 C -0.07 -0.99 4.78 -29.03 -0.14 -1.13 16 18 C -0.14 -2.10 4.80 -102.85 -0.49 -2.59 16 19 C 0.07 0.91 11.74 -16.73 -0.20 0.71 16 20 N -0.58 -6.39 6.06 -10.64 -0.06 -6.45 16 21 H 0.42 2.97 8.96 -40.82 -0.37 2.61 16 22 C 0.04 0.52 7.33 -84.01 -0.62 -0.10 16 23 C 0.11 1.37 11.25 -17.36 -0.20 1.17 16 24 N -0.47 -6.74 10.32 -13.41 -0.14 -6.87 16 25 C 0.05 0.65 11.11 -17.93 -0.20 0.45 16 26 C -0.11 -1.63 10.13 -39.56 -0.40 -2.03 16 27 C -0.06 -0.86 6.42 -105.13 -0.67 -1.53 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.57 7.30 -51.93 -0.38 0.19 16 33 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 34 H 0.08 0.94 6.44 -51.93 -0.33 0.61 16 35 H 0.04 1.24 7.11 -51.93 -0.37 0.87 16 36 H 0.04 1.16 7.42 -51.93 -0.39 0.77 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.09 1.07 7.40 -51.92 -0.38 0.69 16 39 H 0.09 1.09 7.26 -51.93 -0.38 0.71 16 40 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 42 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -38.47 366.92 -7.69 -46.16 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.94 Total: 1.76 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.12 Total: 2.18 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.11 Total: -52.63 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.25 Total: -20.12 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.47 -7.69 -46.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771720588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.371 kcal (2) G-P(sol) polarization free energy of solvation -38.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds