Wall clock time and date at job start Tue Mar 31 2020 11:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00146 * 2 1 4 4 C 1.52993 * 109.47251 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47269 * 65.00320 * 4 3 2 6 6 C 1.46505 * 119.99833 * 270.00055 * 5 4 3 7 7 C 1.50701 * 109.46750 * 269.99758 * 6 5 4 8 8 H 1.07998 * 120.00273 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99532 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00119 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99971 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46914 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47305 * 119.99781 * 11 9 7 14 14 H 1.48504 * 109.47146 * 239.99698 * 11 9 7 15 15 C 1.34775 * 120.00080 * 89.99682 * 5 4 3 16 16 O 1.21283 * 120.00134 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99953 * 0.02562 * 15 5 4 18 18 C 1.50703 * 109.47166 * 179.97438 * 17 15 5 19 19 C 1.34456 * 126.51505 * 265.02463 * 18 17 15 20 20 N 1.36665 * 109.96658 * 180.02562 * 19 18 17 21 21 H 0.97006 * 125.05502 * 179.97438 * 20 19 18 22 22 C 1.37550 * 109.90209 * 0.02562 * 20 19 18 23 23 C 1.38865 * 134.46960 * 180.02562 * 22 20 19 24 24 N 1.31740 * 120.27015 * 179.97438 * 23 22 20 25 25 C 1.32291 * 122.57657 * 0.02797 * 24 23 22 26 26 C 1.36645 * 121.32244 * 0.02562 * 25 24 23 27 27 C 1.39843 * 118.69310 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47027 * 299.99577 * 1 2 3 29 29 H 1.08994 * 109.47155 * 59.99501 * 1 2 3 30 30 H 1.09003 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46900 * 60.00212 * 3 2 1 32 32 H 1.09003 * 109.47130 * 300.00895 * 3 2 1 33 33 H 1.08997 * 109.47466 * 304.99923 * 4 3 2 34 34 H 1.09005 * 109.47100 * 185.00347 * 4 3 2 35 35 H 1.08998 * 109.46715 * 30.00065 * 6 5 4 36 36 H 1.08995 * 109.46788 * 149.99731 * 6 5 4 37 37 H 0.96999 * 120.00200 * 179.97438 * 10 9 7 38 38 H 1.09007 * 109.47043 * 59.99994 * 17 15 5 39 39 H 1.08999 * 109.47156 * 299.99800 * 17 15 5 40 40 H 1.08000 * 125.01897 * 0.04469 * 19 18 17 41 41 H 1.07996 * 119.86209 * 359.97438 * 23 22 20 42 42 H 1.08001 * 119.34381 * 179.97438 * 25 24 23 43 43 H 1.07992 * 120.65566 * 179.70593 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1052 -0.8920 -1.3428 7 6 5.5010 -1.2977 -0.9450 8 1 6.2195 -0.5459 -0.6538 9 6 5.8606 -2.6287 -0.9529 10 7 4.9854 -3.5442 -1.3070 11 14 7.5905 -3.1318 -0.4591 12 1 8.3760 -1.9220 -0.1060 13 1 7.5261 -4.0404 0.7137 14 1 8.2449 -3.8328 -1.5930 15 6 4.2614 1.3339 -2.3218 16 8 4.6254 0.8204 -3.3585 17 6 4.1287 2.8322 -2.2290 18 6 4.5052 3.4526 -3.5497 19 6 5.7119 3.9378 -3.8907 20 7 5.6763 4.4216 -5.1684 21 1 6.4275 4.8219 -5.6337 22 6 4.4168 4.2577 -5.6962 23 6 3.8272 4.5572 -6.9173 24 7 2.5596 4.2690 -7.1312 25 6 1.7961 3.6930 -6.2172 26 6 2.2883 3.3624 -4.9861 27 6 3.6281 3.6441 -4.7010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.8515 0.5683 0.8409 34 1 3.9785 2.1766 0.0890 35 1 3.3852 -1.3628 -0.6735 36 1 3.9119 -1.2113 -2.3669 37 1 5.2385 -4.4806 -1.3129 38 1 4.7913 3.2080 -1.4493 39 1 3.0981 3.0912 -1.9860 40 1 6.5811 3.9440 -3.2497 41 1 4.4103 5.0282 -7.6948 42 1 0.7627 3.4805 -6.4484 43 1 1.6541 2.8968 -4.2464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771720588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:15 Heat of formation + Delta-G solvation = -34.727349 kcal Electronic energy + Delta-G solvation = -26548.131164 eV Core-core repulsion = 22786.165210 eV Total energy + Delta-G solvation = -3761.965954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50396 -40.56973 -38.97480 -38.64525 -36.42147 -34.82342 -34.08693 -32.06421 -30.99084 -30.83991 -29.38863 -27.82713 -27.04984 -24.72935 -24.53571 -23.84536 -23.43666 -21.01189 -19.75556 -19.02463 -18.59158 -18.01709 -17.80372 -17.21719 -16.91581 -16.69089 -16.58112 -16.09273 -15.97630 -15.64281 -15.56459 -15.35755 -14.96826 -14.41447 -14.29960 -13.79278 -13.69134 -13.62692 -13.49052 -13.09554 -12.99931 -12.80911 -12.68943 -12.62753 -12.47292 -12.40028 -12.14121 -11.86206 -11.60398 -11.00756 -10.60642 -10.57198 -10.52398 -10.43779 -9.54585 -9.30900 -8.74919 -8.15706 -6.30653 0.02548 0.53367 1.37179 1.39688 1.51367 1.61532 1.98772 2.16415 2.38245 2.60935 2.98420 3.03955 3.13807 3.58981 3.76710 3.79329 3.93882 3.99168 4.16932 4.23968 4.36204 4.37738 4.48063 4.56679 4.57811 4.59710 4.60972 4.66339 4.71177 4.74722 4.88503 5.00053 5.04630 5.26694 5.28663 5.34799 5.56801 5.64599 5.65233 5.95731 5.98812 6.15330 6.40052 6.64269 6.79879 6.96102 7.09346 7.35476 7.64503 8.91499 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.004155 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.899258 B = 6737.854397 C = 8138.946788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.419 6.419 3 C 0.042 3.958 4 C 0.104 3.896 5 N -0.598 5.598 6 C 0.273 3.727 7 C -0.537 4.537 8 H 0.057 0.943 9 C 0.002 3.998 10 N -0.933 5.933 11 Si 0.968 3.032 12 H -0.261 1.261 13 H -0.271 1.271 14 H -0.285 1.285 15 C 0.495 3.505 16 O -0.595 6.595 17 C -0.051 4.051 18 C -0.183 4.183 19 C 0.090 3.910 20 N -0.567 5.567 21 H 0.436 0.564 22 C 0.023 3.977 23 C 0.109 3.891 24 N -0.494 5.494 25 C 0.041 3.959 26 C -0.135 4.135 27 C -0.085 4.085 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.023 0.977 36 H -0.019 1.019 37 H 0.264 0.736 38 H 0.134 0.866 39 H 0.114 0.886 40 H 0.208 0.792 41 H 0.183 0.817 42 H 0.171 0.829 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 21.480 0.537 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.339 6.339 3 C -0.035 4.035 4 C -0.018 4.018 5 N -0.328 5.328 6 C 0.151 3.849 7 C -0.575 4.575 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.573 5.573 11 Si 0.793 3.207 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.211 1.211 15 C 0.284 3.716 16 O -0.475 6.475 17 C -0.091 4.091 18 C -0.190 4.190 19 C -0.040 4.040 20 N -0.171 5.171 21 H 0.277 0.723 22 C -0.087 4.087 23 C -0.059 4.059 24 N -0.204 5.204 25 C -0.108 4.108 26 C -0.155 4.155 27 C -0.096 4.096 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.041 0.959 36 H -0.001 1.001 37 H 0.073 0.927 38 H 0.152 0.848 39 H 0.132 0.868 40 H 0.224 0.776 41 H 0.200 0.800 42 H 0.188 0.812 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.667 21.087 -0.840 21.420 hybrid contribution 1.000 -1.107 0.604 1.609 sum -2.667 19.980 -0.236 20.159 Atomic orbital electron populations 1.22833 0.80208 1.02899 1.00805 1.88051 1.21015 1.29279 1.95521 1.23238 0.93773 0.84657 1.01793 1.21909 0.93006 1.00505 0.86426 1.48149 1.64807 1.07587 1.12289 1.18564 0.95396 0.76416 0.94526 1.21821 0.98281 0.92567 1.44874 0.92447 1.25911 1.01863 0.96518 0.95289 1.70102 1.36592 1.01339 1.49251 0.85362 0.79086 0.78469 0.77827 1.18499 1.19676 1.21117 1.21467 0.76736 0.90730 0.82656 1.90645 1.48777 1.76517 1.31600 1.20043 1.05468 0.88016 0.95536 1.19791 0.94017 1.09254 0.95976 1.22267 0.98903 0.96936 0.85913 1.41553 1.09757 1.53105 1.12684 0.72286 1.19502 0.87302 1.04810 0.97082 1.22256 0.91176 0.99102 0.93320 1.67574 1.05592 1.13324 1.33866 1.22316 1.00683 0.98229 0.89562 1.21385 0.94395 1.00752 0.98978 1.19622 0.94469 1.00514 0.95030 0.91862 0.93826 0.90410 0.88963 0.92879 0.90743 0.85128 0.95863 1.00089 0.92722 0.84845 0.86826 0.77567 0.80040 0.81209 0.85007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.42 -14.32 9.53 -148.98 -1.42 -15.74 16 3 C 0.04 1.08 6.28 71.98 0.45 1.53 16 4 C 0.10 3.07 5.62 86.38 0.49 3.56 16 5 N -0.60 -25.32 2.42 -826.16 -2.00 -27.32 16 6 C 0.27 15.40 4.98 85.63 0.43 15.82 16 7 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 8 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 9 C 0.00 0.14 5.46 84.66 0.46 0.60 16 10 N -0.93 -58.90 13.29 21.45 0.28 -58.61 16 11 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 15 C 0.49 20.27 7.67 87.66 0.67 20.95 16 16 O -0.59 -31.62 15.61 -3.04 -0.05 -31.66 16 17 C -0.05 -1.32 4.78 29.10 0.14 -1.18 16 18 C -0.18 -5.07 4.80 -18.72 -0.09 -5.16 16 19 C 0.09 1.94 11.74 83.07 0.97 2.92 16 20 N -0.57 -11.03 6.06 -187.59 -1.14 -12.16 16 21 H 0.44 4.89 8.96 -92.70 -0.83 4.06 16 22 C 0.02 0.60 7.33 39.08 0.29 0.89 16 23 C 0.11 2.65 11.25 84.86 0.95 3.60 16 24 N -0.49 -13.84 10.32 -196.33 -2.03 -15.86 16 25 C 0.04 1.12 11.11 84.25 0.94 2.05 16 26 C -0.13 -3.94 10.13 22.29 0.23 -3.72 16 27 C -0.08 -2.56 6.42 -20.20 -0.13 -2.69 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.25 7.30 -2.39 -0.02 1.23 16 33 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 34 H 0.13 2.49 6.44 -2.38 -0.02 2.48 16 35 H 0.02 1.39 7.11 -2.39 -0.02 1.37 16 36 H -0.02 -1.27 7.42 -2.39 -0.02 -1.29 16 37 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.13 2.40 7.40 -2.38 -0.02 2.38 16 39 H 0.11 2.41 7.26 -2.39 -0.02 2.39 16 40 H 0.21 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 42 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -90.42 366.92 3.17 -87.25 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.20 Total: 16.59 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 7.28 Total: 9.70 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -4.88 Total: -113.96 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.47 Total: -47.40 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -90.42 3.17 -87.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771720588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.527 kcal (2) G-P(sol) polarization free energy of solvation -90.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds