Wall clock time and date at job start Tue Mar 31 2020 11:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 C 1.52994 * 109.47326 * 239.99588 * 2 1 3 5 5 N 1.46503 * 109.47442 * 184.99916 * 4 2 1 6 6 C 1.46502 * 119.99706 * 270.00215 * 5 4 2 7 7 C 1.34773 * 119.99918 * 90.00228 * 5 4 2 8 8 O 1.21559 * 120.00288 * 5.64692 * 7 5 4 9 9 C 1.47759 * 119.99806 * 185.65306 * 7 5 4 10 10 C 1.39636 * 121.07975 * 54.94012 * 9 7 5 11 11 C 1.38333 * 119.38464 * 180.02562 * 10 9 7 12 12 N 1.31732 * 121.53961 * 359.97438 * 11 10 9 13 13 C 1.32111 * 121.95134 * 0.02562 * 12 11 10 14 14 C 1.40821 * 120.46593 * 359.97438 * 13 12 11 15 15 N 1.34646 * 107.26665 * 179.97438 * 14 13 12 16 16 C 1.30283 * 109.66618 * 359.97438 * 15 14 13 17 17 N 1.35986 * 110.05742 * 0.02562 * 16 15 14 18 18 C 1.46504 * 126.35916 * 180.02562 * 17 16 15 19 19 N 1.46504 * 109.47141 * 119.99720 * 2 1 3 20 20 C 1.36941 * 119.99931 * 275.00186 * 19 2 1 21 21 H 1.07999 * 119.99789 * 359.97438 * 20 19 2 22 22 C 1.38808 * 119.99987 * 180.02562 * 20 19 2 23 23 N 1.31619 * 120.00281 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00011 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47342 * 90.00073 * 24 22 20 26 26 H 1.48503 * 109.47060 * 210.00242 * 24 22 20 27 27 H 1.48506 * 109.46951 * 330.00222 * 24 22 20 28 28 H 1.08998 * 109.46953 * 60.00422 * 1 2 3 29 29 H 1.08999 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47054 * 299.99946 * 1 2 3 31 31 H 1.09003 * 109.46832 * 64.99841 * 4 2 1 32 32 H 1.08998 * 109.47688 * 305.00059 * 4 2 1 33 33 H 1.08997 * 109.47313 * 274.94825 * 6 5 4 34 34 H 1.08998 * 109.47521 * 34.95832 * 6 5 4 35 35 H 1.09007 * 109.46905 * 154.95614 * 6 5 4 36 36 H 1.08007 * 120.30854 * 0.03813 * 10 9 7 37 37 H 1.07998 * 119.23378 * 179.72320 * 11 10 9 38 38 H 1.08002 * 124.97405 * 179.97438 * 16 15 14 39 39 H 1.09003 * 109.46861 * 269.97122 * 18 17 16 40 40 H 1.09004 * 109.46708 * 29.97179 * 18 17 16 41 41 H 1.08998 * 109.47031 * 149.97237 * 18 17 16 42 42 H 0.96997 * 120.00293 * 95.00208 * 19 2 1 43 43 H 0.96995 * 120.00174 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2340 -1.7613 7 6 4.0758 -1.8987 -0.6115 8 8 3.3883 -2.8258 -0.2301 9 6 5.5426 -1.9472 -0.4401 10 6 6.2247 -0.9267 0.2255 11 6 7.5986 -1.0075 0.3655 12 7 8.2814 -2.0267 -0.1146 13 6 7.6941 -3.0227 -0.7537 14 6 6.2987 -3.0253 -0.9435 15 7 5.9891 -4.1490 -1.6175 16 6 7.0737 -4.8306 -1.8553 17 7 8.1539 -4.1815 -1.3441 18 6 9.5473 -4.6294 -1.4093 19 7 2.0184 -0.6906 1.1962 20 6 2.1491 -0.0074 2.3758 21 1 1.8926 1.0406 2.4241 22 6 2.6123 -0.6615 3.5091 23 7 2.7375 -0.0050 4.6430 24 14 3.0566 -2.4740 3.4253 25 1 4.4892 -2.6162 3.0609 26 1 2.8176 -3.1039 4.7487 27 1 2.2163 -3.1427 2.3997 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -0.1584 -2.1369 32 1 1.6055 -1.7199 -1.2951 33 1 4.4696 0.0555 -2.8280 34 1 3.8482 1.1983 -1.6129 35 1 5.3061 0.2373 -1.2674 36 1 5.6847 -0.0821 0.6276 37 1 8.1242 -0.2147 0.8768 38 1 7.1097 -5.7735 -2.3807 39 1 9.7734 -5.2413 -0.5360 40 1 9.6977 -5.2180 -2.3143 41 1 10.2072 -3.7620 -1.4259 42 1 2.2491 -1.6317 1.1528 43 1 3.0615 -0.4620 5.4348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755603566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:09 Heat of formation + Delta-G solvation = 90.140037 kcal Electronic energy + Delta-G solvation = -27504.267258 eV Core-core repulsion = 23780.008711 eV Total energy + Delta-G solvation = -3724.258547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.49624 -39.77105 -38.18041 -36.14034 -34.67154 -34.46295 -32.30739 -31.59750 -29.82613 -29.26156 -27.41670 -27.07528 -26.10529 -24.17594 -23.24221 -22.98766 -21.68074 -19.93536 -19.11851 -18.10031 -17.63060 -17.43026 -16.81167 -16.33326 -15.92794 -15.29682 -15.22814 -14.60971 -14.45650 -14.09677 -13.82380 -13.65536 -13.35399 -13.12150 -13.01217 -12.81288 -12.55219 -12.44131 -12.27411 -12.22961 -11.98962 -11.54706 -11.39183 -10.93451 -10.80460 -10.73269 -10.58026 -10.47340 -9.94112 -9.81017 -9.45749 -9.12078 -8.83220 -8.71878 -8.56849 -8.21979 -7.13025 -5.67778 -3.00735 0.51559 1.15337 2.14747 2.66336 3.02714 3.24063 3.54061 3.60177 3.74618 3.77658 3.95273 4.15018 4.35286 4.61571 4.74404 4.77376 4.84476 4.91361 5.10556 5.17969 5.26461 5.31611 5.42674 5.46458 5.60421 5.71534 5.78607 5.81716 5.84122 5.95018 5.98137 6.06336 6.22411 6.30777 6.49320 6.52575 6.74698 6.75502 6.84314 7.08749 7.61356 7.66541 7.75458 8.11366 8.48680 8.53924 9.36117 10.09552 10.30875 11.50177 Molecular weight = 317.16amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.005116 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.240081 B = 5471.343245 C = 6219.834582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.055 0.945 4 C 0.107 3.893 5 N -0.599 5.599 6 C 0.072 3.928 7 C 0.574 3.426 8 O -0.511 6.511 9 C -0.019 4.019 10 C -0.146 4.146 11 C 0.138 3.862 12 N -0.475 5.475 13 C 0.234 3.766 14 C 0.040 3.960 15 N -0.476 5.476 16 C 0.269 3.731 17 N -0.487 5.487 18 C 0.084 3.916 19 N -0.749 5.749 20 C -0.238 4.238 21 H 0.088 0.912 22 C 0.009 3.991 23 N -0.936 5.936 24 Si 0.870 3.130 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.267 1.267 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.160 0.840 37 H 0.175 0.825 38 H 0.223 0.777 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.373 0.627 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.176 -3.963 -18.054 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 H 0.073 0.927 4 C -0.016 4.016 5 N -0.331 5.331 6 C -0.072 4.072 7 C 0.360 3.640 8 O -0.385 6.385 9 C -0.032 4.032 10 C -0.168 4.168 11 C -0.028 4.028 12 N -0.188 5.188 13 C -0.002 4.002 14 C -0.083 4.083 15 N -0.194 5.194 16 C -0.016 4.016 17 N -0.181 5.181 18 C -0.058 4.058 19 N -0.395 5.395 20 C -0.368 4.368 21 H 0.106 0.894 22 C -0.186 4.186 23 N -0.584 5.584 24 Si 0.700 3.300 25 H -0.213 1.213 26 H -0.222 1.222 27 H -0.192 1.192 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.178 0.822 37 H 0.192 0.808 38 H 0.239 0.761 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.210 0.790 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.027 -4.657 -17.857 22.589 hybrid contribution 0.354 -1.109 0.381 1.225 sum 13.381 -5.766 -17.476 22.753 Atomic orbital electron populations 1.22370 0.98431 1.01122 1.00531 1.20616 0.92270 0.95858 0.86339 0.92745 1.21954 0.78506 1.02507 0.98671 1.47457 1.07048 1.20661 1.57973 1.21964 0.96271 0.91088 0.97830 1.17783 0.86285 0.82233 0.77674 1.90792 1.63362 1.36179 1.48204 1.19596 0.93940 0.92318 0.97327 1.22304 0.95716 0.99402 0.99395 1.22542 0.90919 0.94051 0.95288 1.66167 1.41288 1.00669 1.10721 1.18878 0.90596 0.90520 1.00173 1.19152 0.91492 0.95285 1.02359 1.70192 1.26907 1.04826 1.17450 1.25537 0.79760 0.98948 0.97375 1.45033 1.09265 1.17086 1.46682 1.21997 0.78479 1.01861 1.03446 1.43031 1.79412 1.10352 1.06679 1.19055 1.36474 0.95345 0.85932 0.89377 1.24552 1.01548 0.96988 0.95549 1.69702 1.53053 1.35463 1.00191 0.86735 0.79213 0.87487 0.76529 1.21311 1.22187 1.19239 0.94176 0.93412 0.92098 0.90345 0.89961 0.93106 0.90658 0.90503 0.82219 0.80841 0.76113 0.90638 0.89283 0.89255 0.79048 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.49 37.16 0.35 -2.58 16 2 C 0.16 3.14 3.20 -67.93 -0.22 2.92 16 3 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 4 C 0.11 1.78 5.18 -4.04 -0.02 1.76 16 5 N -0.60 -10.26 2.77 -182.73 -0.51 -10.77 16 6 C 0.07 0.90 10.30 59.85 0.62 1.52 16 7 C 0.57 11.80 6.35 -12.37 -0.08 11.72 16 8 O -0.51 -12.56 14.75 5.31 0.08 -12.49 16 9 C -0.02 -0.35 4.94 -104.45 -0.52 -0.86 16 10 C -0.15 -2.33 7.60 -39.02 -0.30 -2.62 16 11 C 0.14 1.90 11.14 -17.56 -0.20 1.70 16 12 N -0.48 -7.07 10.35 -12.30 -0.13 -7.20 16 13 C 0.23 3.61 8.02 -155.65 -1.25 2.37 16 14 C 0.04 0.71 7.00 -84.62 -0.59 0.12 16 15 N -0.48 -8.03 11.23 -11.88 -0.13 -8.16 16 16 C 0.27 3.08 12.50 -89.69 -1.12 1.96 16 17 N -0.49 -5.61 3.20 -124.98 -0.40 -6.01 16 18 C 0.08 0.54 11.20 59.85 0.67 1.21 16 19 N -0.75 -18.84 4.33 -53.42 -0.23 -19.07 16 20 C -0.24 -6.89 10.41 -15.06 -0.16 -7.05 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 22 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 23 N -0.94 -30.16 13.97 55.49 0.78 -29.38 16 24 Si 0.87 24.88 27.74 -169.99 -4.71 20.17 16 25 H -0.29 -8.26 7.11 56.52 0.40 -7.86 16 26 H -0.30 -8.42 7.11 56.52 0.40 -8.01 16 27 H -0.27 -7.76 6.52 56.52 0.37 -7.40 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 32 H 0.08 1.51 7.35 -51.93 -0.38 1.13 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 35 H 0.08 0.94 4.45 -51.93 -0.23 0.71 16 36 H 0.16 2.48 7.61 -52.48 -0.40 2.09 16 37 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.22 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.37 9.99 3.13 -40.82 -0.13 9.86 16 43 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -40.90 358.17 -8.56 -49.46 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.80 Total: 5.69 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -2.90 Total: 12.36 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -0.62 Total: -80.59 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.71 Total: 20.17 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -40.90 -8.56 -49.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755603566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.599 kcal (2) G-P(sol) polarization free energy of solvation -40.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds