Wall clock time and date at job start Tue Mar 31 2020 11:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 C 1.52994 * 109.47326 * 239.99588 * 2 1 3 5 5 N 1.46503 * 109.47442 * 184.99916 * 4 2 1 6 6 C 1.46502 * 119.99706 * 270.00215 * 5 4 2 7 7 C 1.34773 * 119.99918 * 90.00228 * 5 4 2 8 8 O 1.21559 * 120.00288 * 5.64692 * 7 5 4 9 9 C 1.47759 * 119.99806 * 185.65306 * 7 5 4 10 10 C 1.39636 * 121.07975 * 54.94012 * 9 7 5 11 11 C 1.38333 * 119.38464 * 180.02562 * 10 9 7 12 12 N 1.31732 * 121.53961 * 359.97438 * 11 10 9 13 13 C 1.32111 * 121.95134 * 0.02562 * 12 11 10 14 14 C 1.40821 * 120.46593 * 359.97438 * 13 12 11 15 15 N 1.34646 * 107.26665 * 179.97438 * 14 13 12 16 16 C 1.30283 * 109.66618 * 359.97438 * 15 14 13 17 17 N 1.35986 * 110.05742 * 0.02562 * 16 15 14 18 18 C 1.46504 * 126.35916 * 180.02562 * 17 16 15 19 19 N 1.46504 * 109.47141 * 119.99720 * 2 1 3 20 20 C 1.36941 * 119.99931 * 275.00186 * 19 2 1 21 21 H 1.07999 * 119.99789 * 359.97438 * 20 19 2 22 22 C 1.38808 * 119.99987 * 180.02562 * 20 19 2 23 23 N 1.31619 * 120.00281 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00011 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47342 * 90.00073 * 24 22 20 26 26 H 1.48503 * 109.47060 * 210.00242 * 24 22 20 27 27 H 1.48506 * 109.46951 * 330.00222 * 24 22 20 28 28 H 1.08998 * 109.46953 * 60.00422 * 1 2 3 29 29 H 1.08999 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47054 * 299.99946 * 1 2 3 31 31 H 1.09003 * 109.46832 * 64.99841 * 4 2 1 32 32 H 1.08998 * 109.47688 * 305.00059 * 4 2 1 33 33 H 1.08997 * 109.47313 * 274.94825 * 6 5 4 34 34 H 1.08998 * 109.47521 * 34.95832 * 6 5 4 35 35 H 1.09007 * 109.46905 * 154.95614 * 6 5 4 36 36 H 1.08007 * 120.30854 * 0.03813 * 10 9 7 37 37 H 1.07998 * 119.23378 * 179.72320 * 11 10 9 38 38 H 1.08002 * 124.97405 * 179.97438 * 16 15 14 39 39 H 1.09003 * 109.46861 * 269.97122 * 18 17 16 40 40 H 1.09004 * 109.46708 * 29.97179 * 18 17 16 41 41 H 1.08998 * 109.47031 * 149.97237 * 18 17 16 42 42 H 0.96997 * 120.00293 * 95.00208 * 19 2 1 43 43 H 0.96995 * 120.00174 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2340 -1.7613 7 6 4.0758 -1.8987 -0.6115 8 8 3.3883 -2.8258 -0.2301 9 6 5.5426 -1.9472 -0.4401 10 6 6.2247 -0.9267 0.2255 11 6 7.5986 -1.0075 0.3655 12 7 8.2814 -2.0267 -0.1146 13 6 7.6941 -3.0227 -0.7537 14 6 6.2987 -3.0253 -0.9435 15 7 5.9891 -4.1490 -1.6175 16 6 7.0737 -4.8306 -1.8553 17 7 8.1539 -4.1815 -1.3441 18 6 9.5473 -4.6294 -1.4093 19 7 2.0184 -0.6906 1.1962 20 6 2.1491 -0.0074 2.3758 21 1 1.8926 1.0406 2.4241 22 6 2.6123 -0.6615 3.5091 23 7 2.7375 -0.0050 4.6430 24 14 3.0566 -2.4740 3.4253 25 1 4.4892 -2.6162 3.0609 26 1 2.8176 -3.1039 4.7487 27 1 2.2163 -3.1427 2.3997 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -0.1584 -2.1369 32 1 1.6055 -1.7199 -1.2951 33 1 4.4696 0.0555 -2.8280 34 1 3.8482 1.1983 -1.6129 35 1 5.3061 0.2373 -1.2674 36 1 5.6847 -0.0821 0.6276 37 1 8.1242 -0.2147 0.8768 38 1 7.1097 -5.7735 -2.3807 39 1 9.7734 -5.2413 -0.5360 40 1 9.6977 -5.2180 -2.3143 41 1 10.2072 -3.7620 -1.4259 42 1 2.2491 -1.6317 1.1528 43 1 3.0615 -0.4620 5.4348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755603566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:08 Heat of formation + Delta-G solvation = 61.363610 kcal Electronic energy + Delta-G solvation = -27505.515098 eV Core-core repulsion = 23780.008711 eV Total energy + Delta-G solvation = -3725.506387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.52861 -41.14718 -39.32081 -37.78217 -36.16481 -35.55949 -34.13616 -33.03272 -31.19506 -30.90330 -28.32732 -28.11343 -27.36673 -25.59006 -25.07262 -24.08948 -22.87428 -21.51770 -20.41599 -19.72105 -19.08712 -18.57126 -18.07488 -17.50401 -17.08852 -16.83455 -16.55334 -16.30398 -15.71311 -15.50542 -15.05372 -14.78314 -14.66479 -14.53771 -14.36076 -14.23687 -13.81405 -13.64841 -13.55011 -13.44612 -13.29767 -13.13265 -13.02212 -12.81342 -12.41564 -12.24210 -11.99997 -11.84554 -11.82236 -11.75953 -11.28391 -11.04590 -10.31394 -9.84171 -9.68025 -9.57391 -9.26589 -8.06869 -5.32478 -0.62516 0.01851 1.21084 1.25741 1.27951 1.42563 1.55578 1.74814 1.96129 2.39861 2.59838 2.95761 3.23214 3.26587 3.39245 3.62357 3.68315 3.87885 4.02160 4.08318 4.18725 4.24935 4.28596 4.41221 4.42115 4.56492 4.62554 4.69990 4.71338 4.74791 4.83004 4.86294 4.90091 5.01879 5.02882 5.24509 5.42808 5.44861 5.64202 5.79909 5.90685 6.20411 6.29290 6.64123 6.66099 7.05242 7.11238 7.91751 8.07735 9.15114 Molecular weight = 317.16amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.005116 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.240081 B = 5471.343245 C = 6219.834582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 H 0.063 0.937 4 C 0.111 3.889 5 N -0.597 5.597 6 C 0.066 3.934 7 C 0.565 3.435 8 O -0.567 6.567 9 C -0.054 4.054 10 C -0.148 4.148 11 C 0.138 3.862 12 N -0.473 5.473 13 C 0.219 3.781 14 C 0.013 3.987 15 N -0.536 5.536 16 C 0.295 3.705 17 N -0.481 5.481 18 C 0.077 3.923 19 N -0.758 5.758 20 C -0.205 4.205 21 H 0.075 0.925 22 C -0.041 4.041 23 N -0.973 5.973 24 Si 0.920 3.080 25 H -0.296 1.296 26 H -0.295 1.295 27 H -0.280 1.280 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.212 0.788 38 H 0.277 0.723 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.087 0.913 42 H 0.366 0.634 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.787 -4.083 -20.674 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.012 4.012 5 N -0.327 5.327 6 C -0.076 4.076 7 C 0.353 3.647 8 O -0.447 6.447 9 C -0.067 4.067 10 C -0.170 4.170 11 C -0.027 4.027 12 N -0.187 5.187 13 C -0.018 4.018 14 C -0.109 4.109 15 N -0.256 5.256 16 C 0.010 3.990 17 N -0.173 5.173 18 C -0.063 4.063 19 N -0.403 5.403 20 C -0.336 4.336 21 H 0.092 0.908 22 C -0.233 4.233 23 N -0.626 5.626 24 Si 0.753 3.247 25 H -0.223 1.223 26 H -0.222 1.222 27 H -0.206 1.206 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.148 0.852 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.175 0.825 37 H 0.228 0.772 38 H 0.293 0.707 39 H 0.102 0.898 40 H 0.149 0.851 41 H 0.106 0.894 42 H 0.202 0.798 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.666 -4.745 -20.553 25.691 hybrid contribution -0.109 -1.066 1.014 1.476 sum 14.557 -5.812 -19.539 25.049 Atomic orbital electron populations 1.22231 0.96683 1.00934 1.01715 1.20989 0.93442 0.96025 0.85415 0.91877 1.21970 0.78393 1.01811 0.99020 1.47641 1.07620 1.20691 1.56793 1.22238 0.95935 0.90499 0.98904 1.18255 0.87140 0.82242 0.77067 1.90733 1.64712 1.38322 1.50897 1.19686 0.93191 0.94124 0.99708 1.22370 0.96685 0.98826 0.99142 1.23107 0.90221 0.94619 0.94798 1.66305 1.41082 1.00740 1.10543 1.19213 0.90163 0.91822 1.00582 1.19428 0.92736 0.95672 1.03088 1.70147 1.29751 1.05769 1.19892 1.26626 0.78447 0.99192 0.94774 1.45431 1.11173 1.15534 1.45182 1.22396 0.75489 1.02367 1.06003 1.43234 1.79609 1.10170 1.07313 1.19124 1.32922 0.94654 0.86927 0.90756 1.24935 1.03552 0.98969 0.95894 1.69778 1.55681 1.36350 1.00743 0.85945 0.78082 0.85121 0.75590 1.22320 1.22222 1.20613 0.89512 0.94306 0.94340 0.85222 0.91968 0.90790 0.88604 0.90432 0.82548 0.77152 0.70727 0.89758 0.85081 0.89443 0.79846 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 9.49 71.98 0.68 -4.60 16 2 C 0.15 5.68 3.20 44.99 0.14 5.82 16 3 H 0.06 2.30 8.08 -2.39 -0.02 2.28 16 4 C 0.11 3.53 5.18 86.38 0.45 3.97 16 5 N -0.60 -20.02 2.77 -850.30 -2.36 -22.37 16 6 C 0.07 1.53 10.30 127.77 1.32 2.85 16 7 C 0.56 23.76 6.35 86.76 0.55 24.31 16 8 O -0.57 -29.06 14.75 -3.90 -0.06 -29.12 16 9 C -0.05 -2.06 4.94 -19.75 -0.10 -2.15 16 10 C -0.15 -4.76 7.60 22.63 0.17 -4.58 16 11 C 0.14 3.69 11.14 84.73 0.94 4.63 16 12 N -0.47 -13.55 10.35 -192.84 -2.00 -15.55 16 13 C 0.22 6.57 8.02 133.92 1.07 7.64 16 14 C 0.01 0.48 7.00 40.01 0.28 0.76 16 15 N -0.54 -18.00 11.23 -191.51 -2.15 -20.15 16 16 C 0.29 6.06 12.50 180.02 2.25 8.31 16 17 N -0.48 -9.94 3.20 -549.31 -1.76 -11.69 16 18 C 0.08 0.72 11.20 127.77 1.43 2.15 16 19 N -0.76 -38.38 4.33 -322.94 -1.40 -39.78 16 20 C -0.20 -12.00 10.41 84.03 0.87 -11.12 16 21 H 0.07 4.54 8.06 -2.91 -0.02 4.52 16 22 C -0.04 -2.59 5.50 84.86 0.47 -2.12 16 23 N -0.97 -63.99 13.97 21.65 0.30 -63.69 16 24 Si 0.92 53.52 27.74 68.60 1.90 55.42 16 25 H -0.30 -17.42 7.11 99.48 0.71 -16.71 16 26 H -0.30 -16.91 7.11 99.48 0.71 -16.21 16 27 H -0.28 -16.69 6.52 99.48 0.65 -16.04 16 28 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.13 2.79 8.07 -2.39 -0.02 2.77 16 32 H 0.06 2.27 7.35 -2.39 -0.02 2.25 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.83 8.11 -2.39 -0.02 1.81 16 35 H 0.08 1.82 4.45 -2.38 -0.01 1.81 16 36 H 0.16 4.95 7.61 -2.91 -0.02 4.93 16 37 H 0.21 3.76 8.06 -2.91 -0.02 3.73 16 38 H 0.28 1.97 8.06 -2.91 -0.02 1.94 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 40 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.37 20.00 3.13 -92.71 -0.29 19.71 16 43 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -94.55 358.17 3.71 -90.84 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.69 Total: 20.23 kcal Atomic # 6 Polarization: 25.33 SS G_CDS: 10.54 Total: 35.86 kcal Atomic # 7 Polarization: -163.87 SS G_CDS: -9.36 Total: -173.23 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.06 Total: -29.12 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 1.90 Total: 55.42 kcal Total: -94.55 3.71 -90.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755603566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.206 kcal (2) G-P(sol) polarization free energy of solvation -94.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds